Strain Fitness in Sinorhizobium meliloti 1021 around SMc03129

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03130 and SMc03129 are separated by 67 nucleotidesSMc03129 and SMc03128 are separated by 12 nucleotidesSMc03128 and SMc03127 are separated by 17 nucleotides SMc03130: SMc03130 - hypothetical protein, at 3,199,470 to 3,200,378 SMc03130 SMc03129: SMc03129 - hypothetical protein, at 3,200,446 to 3,201,213 SMc03129 SMc03128: SMc03128 - ABC transporter permease, at 3,201,226 to 3,202,107 SMc03128 SMc03127: SMc03127 - ABC transporter permease, at 3,202,125 to 3,203,051 SMc03127 Position (kb) 3200 3201 3202Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3199.550 kb on - strandat 3199.688 kb on - strand, within SMc03130at 3199.688 kb on - strand, within SMc03130at 3199.699 kb on + strand, within SMc03130at 3199.699 kb on + strand, within SMc03130at 3199.700 kb on - strand, within SMc03130at 3199.700 kb on - strand, within SMc03130at 3199.700 kb on - strand, within SMc03130at 3199.795 kb on + strand, within SMc03130at 3199.796 kb on - strand, within SMc03130at 3199.810 kb on + strand, within SMc03130at 3199.810 kb on + strand, within SMc03130at 3199.811 kb on - strand, within SMc03130at 3199.811 kb on - strand, within SMc03130at 3199.897 kb on + strand, within SMc03130at 3199.898 kb on - strand, within SMc03130at 3200.416 kb on + strandat 3200.417 kb on - strandat 3200.424 kb on - strandat 3200.461 kb on + strandat 3200.601 kb on + strand, within SMc03129at 3200.613 kb on + strand, within SMc03129at 3200.659 kb on + strand, within SMc03129at 3200.660 kb on - strand, within SMc03129at 3200.873 kb on + strand, within SMc03129at 3200.939 kb on - strand, within SMc03129at 3200.967 kb on + strand, within SMc03129at 3200.968 kb on - strand, within SMc03129at 3201.044 kb on - strand, within SMc03129at 3201.344 kb on + strand, within SMc03128at 3201.345 kb on - strand, within SMc03128at 3201.947 kb on + strand, within SMc03128at 3201.947 kb on + strand, within SMc03128at 3202.127 kb on - strandat 3202.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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3,199,550 - -0.0
3,199,688 - SMc03130 0.24 -0.7
3,199,688 - SMc03130 0.24 +0.2
3,199,699 + SMc03130 0.25 +0.8
3,199,699 + SMc03130 0.25 -0.4
3,199,700 - SMc03130 0.25 -0.9
3,199,700 - SMc03130 0.25 -1.1
3,199,700 - SMc03130 0.25 -1.8
3,199,795 + SMc03130 0.36 -0.8
3,199,796 - SMc03130 0.36 +0.5
3,199,810 + SMc03130 0.37 -0.0
3,199,810 + SMc03130 0.37 +0.4
3,199,811 - SMc03130 0.38 +0.4
3,199,811 - SMc03130 0.38 -0.6
3,199,897 + SMc03130 0.47 +0.2
3,199,898 - SMc03130 0.47 -2.4
3,200,416 + -0.4
3,200,417 - -0.6
3,200,424 - -0.5
3,200,461 + -0.8
3,200,601 + SMc03129 0.20 +0.0
3,200,613 + SMc03129 0.22 -0.6
3,200,659 + SMc03129 0.28 -0.0
3,200,660 - SMc03129 0.28 -0.3
3,200,873 + SMc03129 0.56 -0.7
3,200,939 - SMc03129 0.64 -0.0
3,200,967 + SMc03129 0.68 -0.1
3,200,968 - SMc03129 0.68 -0.0
3,201,044 - SMc03129 0.78 -0.9
3,201,344 + SMc03128 0.13 -0.6
3,201,345 - SMc03128 0.13 +3.4
3,201,947 + SMc03128 0.82 +0.2
3,201,947 + SMc03128 0.82 -0.1
3,202,127 - +0.3
3,202,127 - +0.2

Or see this region's nucleotide sequence