Strain Fitness in Sinorhizobium meliloti 1021 around SMc02104

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02105 and SMc02104 are separated by 4 nucleotidesSMc02104 and SMc02103 are separated by 13 nucleotidesSMc02103 and SMc02102 are separated by 141 nucleotides SMc02105: SMc02105 - hypothetical protein, at 1,604,216 to 1,605,403 SMc02105 SMc02104: SMc02104 - hypothetical protein, at 1,605,408 to 1,606,133 SMc02104 SMc02103: SMc02103 - hypothetical protein, at 1,606,147 to 1,606,611 SMc02103 SMc02102: SMc02102 - hypothetical protein, at 1,606,753 to 1,607,571 SMc02102 Position (kb) 1605 1606 1607Strain fitness (log2 ratio) -2 -1 0 1at 1604.445 kb on + strand, within SMc02105at 1604.463 kb on + strand, within SMc02105at 1604.464 kb on - strand, within SMc02105at 1604.520 kb on + strand, within SMc02105at 1604.520 kb on + strand, within SMc02105at 1604.629 kb on - strand, within SMc02105at 1604.629 kb on - strand, within SMc02105at 1604.683 kb on - strand, within SMc02105at 1604.683 kb on - strand, within SMc02105at 1604.683 kb on - strand, within SMc02105at 1604.683 kb on - strand, within SMc02105at 1604.748 kb on - strand, within SMc02105at 1604.839 kb on - strand, within SMc02105at 1604.872 kb on + strand, within SMc02105at 1605.135 kb on + strand, within SMc02105at 1605.136 kb on - strand, within SMc02105at 1605.136 kb on - strand, within SMc02105at 1605.162 kb on + strand, within SMc02105at 1605.163 kb on - strand, within SMc02105at 1605.163 kb on - strand, within SMc02105at 1605.273 kb on + strand, within SMc02105at 1605.274 kb on - strand, within SMc02105at 1605.297 kb on + strandat 1605.298 kb on - strandat 1605.298 kb on - strandat 1605.298 kb on - strandat 1605.378 kb on - strandat 1605.378 kb on - strandat 1606.125 kb on - strandat 1606.503 kb on - strand, within SMc02103at 1606.527 kb on - strand, within SMc02103at 1606.527 kb on - strand, within SMc02103at 1606.536 kb on - strand, within SMc02103at 1606.536 kb on - strand, within SMc02103at 1606.909 kb on + strand, within SMc02102at 1606.909 kb on + strand, within SMc02102at 1606.924 kb on + strand, within SMc02102at 1606.954 kb on + strand, within SMc02102at 1606.955 kb on - strand, within SMc02102at 1606.955 kb on - strand, within SMc02102at 1607.033 kb on - strand, within SMc02102

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
1,604,445 + SMc02105 0.19 -2.0
1,604,463 + SMc02105 0.21 -0.1
1,604,464 - SMc02105 0.21 +0.2
1,604,520 + SMc02105 0.26 +1.0
1,604,520 + SMc02105 0.26 +0.5
1,604,629 - SMc02105 0.35 -0.4
1,604,629 - SMc02105 0.35 +0.1
1,604,683 - SMc02105 0.39 +0.4
1,604,683 - SMc02105 0.39 -0.6
1,604,683 - SMc02105 0.39 -0.6
1,604,683 - SMc02105 0.39 +0.1
1,604,748 - SMc02105 0.45 -0.3
1,604,839 - SMc02105 0.52 +0.1
1,604,872 + SMc02105 0.55 +0.1
1,605,135 + SMc02105 0.77 +0.1
1,605,136 - SMc02105 0.77 +0.0
1,605,136 - SMc02105 0.77 +0.3
1,605,162 + SMc02105 0.80 -0.8
1,605,163 - SMc02105 0.80 +0.2
1,605,163 - SMc02105 0.80 +0.1
1,605,273 + SMc02105 0.89 +0.1
1,605,274 - SMc02105 0.89 +0.0
1,605,297 + +0.1
1,605,298 - +0.1
1,605,298 - +0.2
1,605,298 - +0.3
1,605,378 - -0.2
1,605,378 - -0.0
1,606,125 - -0.0
1,606,503 - SMc02103 0.77 -0.3
1,606,527 - SMc02103 0.82 -0.0
1,606,527 - SMc02103 0.82 -1.2
1,606,536 - SMc02103 0.84 -0.7
1,606,536 - SMc02103 0.84 +0.4
1,606,909 + SMc02102 0.19 -1.3
1,606,909 + SMc02102 0.19 -0.5
1,606,924 + SMc02102 0.21 -0.5
1,606,954 + SMc02102 0.25 -0.8
1,606,955 - SMc02102 0.25 +0.5
1,606,955 - SMc02102 0.25 +1.5
1,607,033 - SMc02102 0.34 -1.2

Or see this region's nucleotide sequence