Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02088 and SMc02087 are separated by 537 nucleotides SMc02087 and SMc02086 are separated by 305 nucleotides
SMc02088: SMc02088 - hypothetical protein, at 1,621,299 to 1,621,583
SMc02088
SMc02087: SMc02087 - type II citrate synthase, at 1,622,121 to 1,623,410
SMc02087
SMc02086: SMc02086 - hypothetical protein, at 1,623,716 to 1,626,121
SMc02086
Position (kb)
1622
1623
1624 Strain fitness (log2 ratio)
-1
0
1 at 1621.244 kb on + strand at 1621.253 kb on + strand at 1621.290 kb on + strand at 1621.290 kb on + strand at 1621.315 kb on + strand at 1621.316 kb on - strand at 1621.432 kb on + strand, within SMc02088 at 1621.433 kb on - strand, within SMc02088 at 1621.433 kb on - strand, within SMc02088 at 1621.534 kb on + strand, within SMc02088 at 1621.534 kb on + strand, within SMc02088 at 1621.534 kb on + strand, within SMc02088 at 1621.534 kb on + strand, within SMc02088 at 1621.535 kb on - strand, within SMc02088 at 1621.535 kb on - strand, within SMc02088 at 1621.565 kb on + strand at 1621.567 kb on + strand at 1621.567 kb on + strand at 1621.567 kb on + strand at 1621.567 kb on + strand at 1621.567 kb on + strand at 1621.568 kb on - strand at 1621.568 kb on - strand at 1621.568 kb on - strand at 1621.568 kb on - strand at 1621.568 kb on - strand at 1621.573 kb on + strand at 1621.574 kb on - strand at 1621.664 kb on + strand at 1621.665 kb on - strand at 1621.665 kb on - strand at 1621.665 kb on - strand at 1621.667 kb on + strand at 1621.667 kb on + strand at 1621.667 kb on + strand at 1621.668 kb on - strand at 1621.676 kb on + strand at 1621.677 kb on - strand at 1621.677 kb on - strand at 1621.741 kb on + strand at 1621.816 kb on + strand at 1621.957 kb on + strand at 1621.958 kb on - strand at 1621.960 kb on + strand at 1621.960 kb on + strand at 1621.961 kb on - strand at 1621.961 kb on - strand at 1621.961 kb on - strand at 1621.961 kb on - strand at 1623.481 kb on - strand at 1623.565 kb on + strand at 1623.565 kb on + strand at 1623.566 kb on - strand at 1623.606 kb on + strand at 1623.873 kb on + strand at 1623.874 kb on - strand at 1623.907 kb on - strand at 1623.936 kb on - strand at 1623.936 kb on - strand at 1624.053 kb on + strand, within SMc02086
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 1,621,244 + -0.7 1,621,253 + +0.0 1,621,290 + -0.8 1,621,290 + -0.2 1,621,315 + -0.4 1,621,316 - +0.3 1,621,432 + SMc02088 0.47 +0.3 1,621,433 - SMc02088 0.47 -0.5 1,621,433 - SMc02088 0.47 +0.2 1,621,534 + SMc02088 0.82 +0.2 1,621,534 + SMc02088 0.82 -0.4 1,621,534 + SMc02088 0.82 -0.2 1,621,534 + SMc02088 0.82 -0.3 1,621,535 - SMc02088 0.83 -0.1 1,621,535 - SMc02088 0.83 +0.4 1,621,565 + +1.0 1,621,567 + -0.3 1,621,567 + -0.3 1,621,567 + +0.1 1,621,567 + -0.0 1,621,567 + -1.4 1,621,568 - +0.6 1,621,568 - -0.1 1,621,568 - -0.3 1,621,568 - -0.0 1,621,568 - -0.2 1,621,573 + +0.1 1,621,574 - -0.5 1,621,664 + +0.2 1,621,665 - +0.2 1,621,665 - +0.0 1,621,665 - -0.1 1,621,667 + +0.4 1,621,667 + -0.0 1,621,667 + -1.3 1,621,668 - +0.5 1,621,676 + +0.5 1,621,677 - +0.0 1,621,677 - +0.2 1,621,741 + -0.0 1,621,816 + -0.0 1,621,957 + +0.5 1,621,958 - -0.6 1,621,960 + -0.5 1,621,960 + +0.2 1,621,961 - +0.6 1,621,961 - +0.1 1,621,961 - -0.5 1,621,961 - +1.0 1,623,481 - -0.1 1,623,565 + +0.2 1,623,565 + -0.5 1,623,566 - +0.3 1,623,606 + +0.1 1,623,873 + +0.0 1,623,874 - +0.7 1,623,907 - +0.5 1,623,936 - -0.5 1,623,936 - -0.1 1,624,053 + SMc02086 0.14 -0.4
Or see this region's nucleotide sequence