Strain Fitness in Sinorhizobium meliloti 1021 around SMc01620

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01619 and SMc01620 are separated by 13 nucleotidesSMc01620 and SMc01621 are separated by 28 nucleotidesSMc01621 and SMc01622 are separated by 9 nucleotides SMc01619: SMc01619 - hypothetical protein, at 2,409,552 to 2,410,607 SMc01619 SMc01620: SMc01620 - glycerol-3-phosphate dehydrogenase, at 2,410,621 to 2,412,135 SMc01620 SMc01621: SMc01621 - L-fuculose phosphate aldolase, at 2,412,164 to 2,412,832 SMc01621 SMc01622: SMc01622 - oxidoreductase, at 2,412,842 to 2,413,879 SMc01622 Position (kb) 2410 2411 2412 2413Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2410.178 kb on - strand, within SMc01619at 2410.332 kb on - strand, within SMc01619at 2410.748 kb on - strandat 2410.748 kb on - strandat 2410.748 kb on - strandat 2410.862 kb on + strand, within SMc01620at 2410.863 kb on - strand, within SMc01620at 2410.863 kb on - strand, within SMc01620at 2410.863 kb on - strand, within SMc01620at 2410.958 kb on - strand, within SMc01620at 2411.113 kb on - strand, within SMc01620at 2411.299 kb on - strand, within SMc01620at 2411.378 kb on + strand, within SMc01620at 2411.379 kb on - strand, within SMc01620at 2411.379 kb on - strand, within SMc01620at 2411.952 kb on - strand, within SMc01620at 2411.952 kb on - strand, within SMc01620at 2411.965 kb on + strand, within SMc01620at 2411.965 kb on + strand, within SMc01620at 2412.201 kb on + strandat 2412.202 kb on - strandat 2412.202 kb on - strandat 2412.279 kb on + strand, within SMc01621at 2412.280 kb on - strand, within SMc01621at 2412.282 kb on + strand, within SMc01621at 2412.283 kb on - strand, within SMc01621at 2412.486 kb on + strand, within SMc01621at 2412.486 kb on + strand, within SMc01621at 2412.486 kb on + strand, within SMc01621at 2412.486 kb on + strand, within SMc01621at 2412.487 kb on - strand, within SMc01621at 2412.487 kb on - strand, within SMc01621at 2412.548 kb on - strand, within SMc01621at 2412.745 kb on + strand, within SMc01621at 2412.745 kb on + strand, within SMc01621at 2412.912 kb on + strandat 2412.912 kb on + strandat 2412.912 kb on + strandat 2412.913 kb on - strandat 2412.913 kb on - strandat 2412.913 kb on - strandat 2412.913 kb on - strandat 2412.913 kb on - strandat 2412.941 kb on + strandat 2412.942 kb on - strandat 2412.942 kb on - strandat 2412.942 kb on - strandat 2412.943 kb on + strandat 2412.944 kb on - strandat 2412.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,410,178 - SMc01619 0.59 -0.2
2,410,332 - SMc01619 0.74 -0.5
2,410,748 - -0.0
2,410,748 - -0.1
2,410,748 - -0.0
2,410,862 + SMc01620 0.16 -0.7
2,410,863 - SMc01620 0.16 +0.6
2,410,863 - SMc01620 0.16 +2.3
2,410,863 - SMc01620 0.16 -0.2
2,410,958 - SMc01620 0.22 -1.2
2,411,113 - SMc01620 0.32 -0.4
2,411,299 - SMc01620 0.45 -2.4
2,411,378 + SMc01620 0.50 -0.1
2,411,379 - SMc01620 0.50 +0.1
2,411,379 - SMc01620 0.50 -0.2
2,411,952 - SMc01620 0.88 +0.1
2,411,952 - SMc01620 0.88 +0.0
2,411,965 + SMc01620 0.89 -0.1
2,411,965 + SMc01620 0.89 +0.2
2,412,201 + +0.4
2,412,202 - -0.5
2,412,202 - +0.1
2,412,279 + SMc01621 0.17 -0.1
2,412,280 - SMc01621 0.17 -0.2
2,412,282 + SMc01621 0.18 -0.2
2,412,283 - SMc01621 0.18 +0.1
2,412,486 + SMc01621 0.48 +0.4
2,412,486 + SMc01621 0.48 -0.5
2,412,486 + SMc01621 0.48 +1.9
2,412,486 + SMc01621 0.48 +0.1
2,412,487 - SMc01621 0.48 -0.7
2,412,487 - SMc01621 0.48 -0.7
2,412,548 - SMc01621 0.57 +0.1
2,412,745 + SMc01621 0.87 -0.4
2,412,745 + SMc01621 0.87 -1.3
2,412,912 + -2.0
2,412,912 + -3.7
2,412,912 + -3.7
2,412,913 - +0.1
2,412,913 - +0.1
2,412,913 - +0.2
2,412,913 - +0.1
2,412,913 - +0.3
2,412,941 + -2.7
2,412,942 - -1.4
2,412,942 - +0.4
2,412,942 - -0.3
2,412,943 + -4.4
2,412,944 - -0.0
2,412,944 - +0.0

Or see this region's nucleotide sequence