Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01619 and SMc01620 are separated by 13 nucleotides SMc01620 and SMc01621 are separated by 28 nucleotides SMc01621 and SMc01622 are separated by 9 nucleotides
SMc01619: SMc01619 - hypothetical protein, at 2,409,552 to 2,410,607
SMc01619
SMc01620: SMc01620 - glycerol-3-phosphate dehydrogenase, at 2,410,621 to 2,412,135
SMc01620
SMc01621: SMc01621 - L-fuculose phosphate aldolase, at 2,412,164 to 2,412,832
SMc01621
SMc01622: SMc01622 - oxidoreductase, at 2,412,842 to 2,413,879
SMc01622
Position (kb)
2410
2411
2412
2413 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2410.178 kb on - strand, within SMc01619 at 2410.332 kb on - strand, within SMc01619 at 2410.748 kb on - strand at 2410.748 kb on - strand at 2410.748 kb on - strand at 2410.862 kb on + strand, within SMc01620 at 2410.863 kb on - strand, within SMc01620 at 2410.863 kb on - strand, within SMc01620 at 2410.863 kb on - strand, within SMc01620 at 2410.958 kb on - strand, within SMc01620 at 2411.113 kb on - strand, within SMc01620 at 2411.299 kb on - strand, within SMc01620 at 2411.378 kb on + strand, within SMc01620 at 2411.379 kb on - strand, within SMc01620 at 2411.379 kb on - strand, within SMc01620 at 2411.952 kb on - strand, within SMc01620 at 2411.952 kb on - strand, within SMc01620 at 2411.965 kb on + strand, within SMc01620 at 2411.965 kb on + strand, within SMc01620 at 2412.201 kb on + strand at 2412.202 kb on - strand at 2412.202 kb on - strand at 2412.279 kb on + strand, within SMc01621 at 2412.280 kb on - strand, within SMc01621 at 2412.282 kb on + strand, within SMc01621 at 2412.283 kb on - strand, within SMc01621 at 2412.486 kb on + strand, within SMc01621 at 2412.486 kb on + strand, within SMc01621 at 2412.486 kb on + strand, within SMc01621 at 2412.486 kb on + strand, within SMc01621 at 2412.487 kb on - strand, within SMc01621 at 2412.487 kb on - strand, within SMc01621 at 2412.548 kb on - strand, within SMc01621 at 2412.745 kb on + strand, within SMc01621 at 2412.745 kb on + strand, within SMc01621 at 2412.912 kb on + strand at 2412.912 kb on + strand at 2412.912 kb on + strand at 2412.913 kb on - strand at 2412.913 kb on - strand at 2412.913 kb on - strand at 2412.913 kb on - strand at 2412.913 kb on - strand at 2412.941 kb on + strand at 2412.942 kb on - strand at 2412.942 kb on - strand at 2412.942 kb on - strand at 2412.943 kb on + strand at 2412.944 kb on - strand at 2412.944 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 2,410,178 - SMc01619 0.59 -0.2 2,410,332 - SMc01619 0.74 -0.5 2,410,748 - -0.0 2,410,748 - -0.1 2,410,748 - -0.0 2,410,862 + SMc01620 0.16 -0.7 2,410,863 - SMc01620 0.16 +0.6 2,410,863 - SMc01620 0.16 +2.3 2,410,863 - SMc01620 0.16 -0.2 2,410,958 - SMc01620 0.22 -1.2 2,411,113 - SMc01620 0.32 -0.4 2,411,299 - SMc01620 0.45 -2.4 2,411,378 + SMc01620 0.50 -0.1 2,411,379 - SMc01620 0.50 +0.1 2,411,379 - SMc01620 0.50 -0.2 2,411,952 - SMc01620 0.88 +0.1 2,411,952 - SMc01620 0.88 +0.0 2,411,965 + SMc01620 0.89 -0.1 2,411,965 + SMc01620 0.89 +0.2 2,412,201 + +0.4 2,412,202 - -0.5 2,412,202 - +0.1 2,412,279 + SMc01621 0.17 -0.1 2,412,280 - SMc01621 0.17 -0.2 2,412,282 + SMc01621 0.18 -0.2 2,412,283 - SMc01621 0.18 +0.1 2,412,486 + SMc01621 0.48 +0.4 2,412,486 + SMc01621 0.48 -0.5 2,412,486 + SMc01621 0.48 +1.9 2,412,486 + SMc01621 0.48 +0.1 2,412,487 - SMc01621 0.48 -0.7 2,412,487 - SMc01621 0.48 -0.7 2,412,548 - SMc01621 0.57 +0.1 2,412,745 + SMc01621 0.87 -0.4 2,412,745 + SMc01621 0.87 -1.3 2,412,912 + -2.0 2,412,912 + -3.7 2,412,912 + -3.7 2,412,913 - +0.1 2,412,913 - +0.1 2,412,913 - +0.2 2,412,913 - +0.1 2,412,913 - +0.3 2,412,941 + -2.7 2,412,942 - -1.4 2,412,942 - +0.4 2,412,942 - -0.3 2,412,943 + -4.4 2,412,944 - -0.0 2,412,944 - +0.0
Or see this region's nucleotide sequence