Strain Fitness in Sinorhizobium meliloti 1021 around SMc00620

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00619 and SMc00620 are separated by 136 nucleotidesSMc00620 and SMc00621 are separated by 70 nucleotides SMc00619: SMc00619 - hypothetical protein, at 1,292,337 to 1,293,860 SMc00619 SMc00620: SMc00620 - signal peptide protein, at 1,293,997 to 1,295,355 SMc00620 SMc00621: SMc00621 - adenylate cyclase 2 protein, at 1,295,426 to 1,296,517 SMc00621 Position (kb) 1293 1294 1295 1296Strain fitness (log2 ratio) -2 -1 0 1at 1293.538 kb on - strand, within SMc00619at 1293.538 kb on - strand, within SMc00619at 1294.110 kb on + strandat 1294.163 kb on + strand, within SMc00620at 1294.163 kb on + strand, within SMc00620at 1294.164 kb on - strand, within SMc00620at 1294.454 kb on + strand, within SMc00620at 1294.455 kb on - strand, within SMc00620at 1294.455 kb on - strand, within SMc00620at 1294.581 kb on - strand, within SMc00620at 1294.581 kb on - strand, within SMc00620at 1294.776 kb on - strand, within SMc00620at 1294.857 kb on - strand, within SMc00620at 1295.356 kb on - strandat 1295.427 kb on + strandat 1295.697 kb on + strand, within SMc00621at 1295.910 kb on + strand, within SMc00621at 1295.910 kb on + strand, within SMc00621at 1295.910 kb on + strand, within SMc00621at 1295.910 kb on + strand, within SMc00621at 1295.931 kb on + strand, within SMc00621at 1295.976 kb on + strand, within SMc00621at 1295.976 kb on + strand, within SMc00621at 1295.976 kb on + strand, within SMc00621at 1295.977 kb on - strand, within SMc00621at 1296.168 kb on + strand, within SMc00621at 1296.169 kb on - strand, within SMc00621at 1296.275 kb on + strand, within SMc00621at 1296.282 kb on + strand, within SMc00621

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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1,293,538 - SMc00619 0.79 -0.8
1,293,538 - SMc00619 0.79 -1.8
1,294,110 + -0.2
1,294,163 + SMc00620 0.12 -0.6
1,294,163 + SMc00620 0.12 +0.0
1,294,164 - SMc00620 0.12 -0.3
1,294,454 + SMc00620 0.34 +0.1
1,294,455 - SMc00620 0.34 +0.3
1,294,455 - SMc00620 0.34 +0.0
1,294,581 - SMc00620 0.43 -0.2
1,294,581 - SMc00620 0.43 +0.2
1,294,776 - SMc00620 0.57 -0.2
1,294,857 - SMc00620 0.63 -0.1
1,295,356 - -1.0
1,295,427 + -0.5
1,295,697 + SMc00621 0.25 -0.4
1,295,910 + SMc00621 0.44 +0.3
1,295,910 + SMc00621 0.44 -0.3
1,295,910 + SMc00621 0.44 -0.1
1,295,910 + SMc00621 0.44 -1.3
1,295,931 + SMc00621 0.46 +0.0
1,295,976 + SMc00621 0.50 +1.0
1,295,976 + SMc00621 0.50 -0.1
1,295,976 + SMc00621 0.50 +0.3
1,295,977 - SMc00621 0.50 -1.2
1,296,168 + SMc00621 0.68 -0.3
1,296,169 - SMc00621 0.68 +0.0
1,296,275 + SMc00621 0.78 -0.1
1,296,282 + SMc00621 0.78 -0.9

Or see this region's nucleotide sequence