Strain Fitness in Sinorhizobium meliloti 1021 around SMc00578

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00576 and SMc00577 are separated by 3 nucleotidesSMc00577 and SMc00578 are separated by 62 nucleotidesSMc00578 and SMc00579 are separated by 221 nucleotides SMc00576: SMc00576 - hypothetical protein, at 1,246,291 to 1,247,178 SMc00576 SMc00577: SMc00577 - guanylate kinase, at 1,247,182 to 1,247,841 SMc00577 SMc00578: SMc00578 - hypothetical protein, at 1,247,904 to 1,248,032 SMc00578 SMc00579: SMc00579 - dimethyladenosine transferase, at 1,248,254 to 1,249,078 SMc00579 Position (kb) 1247 1248 1249Strain fitness (log2 ratio) -1 0 1at 1247.076 kb on + strandat 1248.057 kb on - strandat 1248.111 kb on - strandat 1248.111 kb on - strandat 1248.574 kb on - strand, within SMc00579at 1248.574 kb on - strand, within SMc00579at 1248.574 kb on - strand, within SMc00579at 1248.895 kb on + strand, within SMc00579at 1248.895 kb on + strand, within SMc00579

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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1,247,076 + +1.1
1,248,057 - +0.6
1,248,111 - +1.3
1,248,111 - +0.4
1,248,574 - SMc00579 0.39 -0.8
1,248,574 - SMc00579 0.39 -0.5
1,248,574 - SMc00579 0.39 -0.5
1,248,895 + SMc00579 0.78 -0.3
1,248,895 + SMc00579 0.78 -0.5

Or see this region's nucleotide sequence