Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0525 and SMa0526 overlap by 4 nucleotides SMa0526 and SMa0527 overlap by 4 nucleotides
SMa0525: SMa0525 - ABC transporter permease, at 282,774 to 284,579
SMa0525
SMa0526: SMa0526 - maltose/trehalose ABC transporter, at 284,576 to 285,622
SMa0526
SMa0527: SMa0527 - phosphatase, at 285,619 to 286,218
SMa0527
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 283.576 kb on - strand, within SMa0525 at 283.611 kb on + strand, within SMa0525 at 283.612 kb on - strand, within SMa0525 at 283.786 kb on + strand, within SMa0525 at 283.827 kb on - strand, within SMa0525 at 284.121 kb on + strand, within SMa0525 at 284.122 kb on - strand, within SMa0525 at 284.167 kb on - strand, within SMa0525 at 284.205 kb on + strand, within SMa0525 at 284.205 kb on + strand, within SMa0525 at 284.254 kb on + strand, within SMa0525 at 284.347 kb on + strand, within SMa0525 at 284.440 kb on + strand at 284.449 kb on - strand at 284.455 kb on - strand at 284.580 kb on + strand at 284.581 kb on - strand at 284.581 kb on - strand at 284.615 kb on + strand at 284.616 kb on - strand at 284.635 kb on - strand at 284.704 kb on - strand, within SMa0526 at 284.715 kb on + strand, within SMa0526 at 284.837 kb on + strand, within SMa0526 at 284.837 kb on + strand, within SMa0526 at 284.837 kb on + strand, within SMa0526 at 284.838 kb on - strand, within SMa0526 at 284.838 kb on - strand, within SMa0526 at 284.855 kb on - strand, within SMa0526 at 285.152 kb on + strand, within SMa0526 at 285.152 kb on + strand, within SMa0526 at 285.153 kb on - strand, within SMa0526 at 285.190 kb on + strand, within SMa0526 at 285.321 kb on + strand, within SMa0526 at 285.333 kb on - strand, within SMa0526 at 285.446 kb on + strand, within SMa0526 at 285.638 kb on + strand at 285.801 kb on + strand, within SMa0527 at 285.802 kb on - strand, within SMa0527 at 285.919 kb on + strand, within SMa0527 at 285.920 kb on - strand, within SMa0527 at 285.943 kb on + strand, within SMa0527 at 285.943 kb on + strand, within SMa0527 at 285.944 kb on - strand, within SMa0527 at 286.131 kb on + strand, within SMa0527 at 286.132 kb on - strand, within SMa0527 at 286.132 kb on - strand, within SMa0527 at 286.253 kb on - strand at 286.253 kb on - strand at 286.253 kb on - strand at 286.253 kb on - strand at 286.253 kb on - strand at 286.348 kb on - strand at 286.358 kb on - strand at 286.386 kb on + strand at 286.386 kb on + strand at 286.387 kb on - strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.549 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 283,576 - SMa0525 0.44 -0.1 283,611 + SMa0525 0.46 +1.7 283,612 - SMa0525 0.46 -0.6 283,786 + SMa0525 0.56 -0.0 283,827 - SMa0525 0.58 +0.1 284,121 + SMa0525 0.75 +0.7 284,122 - SMa0525 0.75 -0.4 284,167 - SMa0525 0.77 +0.3 284,205 + SMa0525 0.79 -0.8 284,205 + SMa0525 0.79 +2.9 284,254 + SMa0525 0.82 +0.0 284,347 + SMa0525 0.87 +1.4 284,440 + +0.5 284,449 - -0.8 284,455 - -0.4 284,580 + -0.1 284,581 - +0.2 284,581 - +0.4 284,615 + +0.4 284,616 - +0.8 284,635 - +0.1 284,704 - SMa0526 0.12 -1.5 284,715 + SMa0526 0.13 -0.1 284,837 + SMa0526 0.25 -1.8 284,837 + SMa0526 0.25 -1.1 284,837 + SMa0526 0.25 -0.3 284,838 - SMa0526 0.25 +0.3 284,838 - SMa0526 0.25 -0.3 284,855 - SMa0526 0.27 -0.4 285,152 + SMa0526 0.55 -1.1 285,152 + SMa0526 0.55 -0.1 285,153 - SMa0526 0.55 +0.4 285,190 + SMa0526 0.59 -1.0 285,321 + SMa0526 0.71 +0.8 285,333 - SMa0526 0.72 +0.0 285,446 + SMa0526 0.83 -1.1 285,638 + +0.3 285,801 + SMa0527 0.30 +0.7 285,802 - SMa0527 0.30 +0.3 285,919 + SMa0527 0.50 -0.7 285,920 - SMa0527 0.50 -0.5 285,943 + SMa0527 0.54 +0.0 285,943 + SMa0527 0.54 +0.0 285,944 - SMa0527 0.54 -0.2 286,131 + SMa0527 0.85 -0.1 286,132 - SMa0527 0.85 -2.2 286,132 - SMa0527 0.85 +0.6 286,253 - -0.1 286,253 - -0.3 286,253 - -0.3 286,253 - +0.2 286,253 - +0.2 286,348 - +0.2 286,358 - +0.5 286,386 + -0.5 286,386 + -0.1 286,387 - -0.1 286,420 + -0.3 286,420 + -1.0 286,420 + +0.0 286,420 + -0.2 286,420 + +0.2 286,549 + -0.2
Or see this region's nucleotide sequence