Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21164

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21163 and SM_b21164 are separated by 2 nucleotidesSM_b21164 and SM_b21165 are separated by 1 nucleotides SM_b21163: SM_b21163 - Urocanate hydratase (EC 4.2.1.49) (from data), at 908,169 to 909,842 _b21163 SM_b21164: SM_b21164 - N-formylglutamate deformylase (EC 3.5.1.68) (from data), at 909,845 to 910,660 _b21164 SM_b21165: SM_b21165 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 910,662 to 912,197 _b21165 Position (kb) 909 910 911Strain fitness (log2 ratio) -1 0 1at 908.878 kb on + strand, within SM_b21163at 909.025 kb on + strand, within SM_b21163at 909.026 kb on - strand, within SM_b21163at 909.106 kb on - strand, within SM_b21163at 909.106 kb on - strand, within SM_b21163at 909.106 kb on - strand, within SM_b21163at 909.106 kb on - strand, within SM_b21163at 909.106 kb on - strand, within SM_b21163at 909.397 kb on + strand, within SM_b21163at 909.398 kb on - strand, within SM_b21163at 909.430 kb on + strand, within SM_b21163at 909.430 kb on + strand, within SM_b21163at 909.431 kb on - strand, within SM_b21163at 909.431 kb on - strand, within SM_b21163at 909.460 kb on + strand, within SM_b21163at 909.691 kb on + strandat 909.821 kb on + strandat 909.822 kb on - strandat 910.154 kb on - strand, within SM_b21164at 910.325 kb on + strand, within SM_b21164at 910.326 kb on - strand, within SM_b21164at 910.326 kb on - strand, within SM_b21164at 910.364 kb on - strand, within SM_b21164at 910.454 kb on + strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.513 kb on - strand, within SM_b21164at 910.759 kb on + strandat 910.759 kb on + strandat 910.759 kb on + strandat 911.104 kb on + strand, within SM_b21165at 911.359 kb on + strand, within SM_b21165at 911.359 kb on + strand, within SM_b21165at 911.359 kb on + strand, within SM_b21165at 911.360 kb on - strand, within SM_b21165at 911.360 kb on - strand, within SM_b21165at 911.459 kb on + strand, within SM_b21165

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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908,878 + SM_b21163 0.42 -0.5
909,025 + SM_b21163 0.51 +0.3
909,026 - SM_b21163 0.51 +0.3
909,106 - SM_b21163 0.56 -0.1
909,106 - SM_b21163 0.56 -0.5
909,106 - SM_b21163 0.56 -0.4
909,106 - SM_b21163 0.56 +1.1
909,106 - SM_b21163 0.56 -0.1
909,397 + SM_b21163 0.73 +0.4
909,398 - SM_b21163 0.73 -0.2
909,430 + SM_b21163 0.75 +0.7
909,430 + SM_b21163 0.75 -0.4
909,431 - SM_b21163 0.75 -0.4
909,431 - SM_b21163 0.75 +0.0
909,460 + SM_b21163 0.77 -1.3
909,691 + +0.0
909,821 + +0.7
909,822 - -0.2
910,154 - SM_b21164 0.38 +0.6
910,325 + SM_b21164 0.59 +1.2
910,326 - SM_b21164 0.59 -0.5
910,326 - SM_b21164 0.59 +1.4
910,364 - SM_b21164 0.64 +0.6
910,454 + SM_b21164 0.75 +0.1
910,455 - SM_b21164 0.75 -0.1
910,455 - SM_b21164 0.75 -0.1
910,455 - SM_b21164 0.75 +0.0
910,455 - SM_b21164 0.75 +0.3
910,513 - SM_b21164 0.82 +0.8
910,759 + -0.2
910,759 + +0.1
910,759 + -0.7
911,104 + SM_b21165 0.29 -0.2
911,359 + SM_b21165 0.45 -0.3
911,359 + SM_b21165 0.45 -0.8
911,359 + SM_b21165 0.45 -0.3
911,360 - SM_b21165 0.45 +0.1
911,360 - SM_b21165 0.45 +0.7
911,459 + SM_b21165 0.52 +1.4

Or see this region's nucleotide sequence