Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS18025

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,935,807	+		LRK54_RS18020	0.68	-0.0
3,935,807	+		LRK54_RS18020	0.68	-0.6
3,935,807	+		LRK54_RS18020	0.68	-0.6
3,935,807	+		LRK54_RS18020	0.68	-0.3
3,935,807	+		LRK54_RS18020	0.68	-0.7
3,935,807	+		LRK54_RS18020	0.68	-0.0
3,935,808	-		LRK54_RS18020	0.68	-0.0
3,935,808	-		LRK54_RS18020	0.68	+1.0
3,935,808	-		LRK54_RS18020	0.68	-0.0
3,935,808	-		LRK54_RS18020	0.68	+0.9
3,935,808	-		LRK54_RS18020	0.68	+0.0
3,935,808	-		LRK54_RS18020	0.68	-0.9
3,935,808	-		LRK54_RS18020	0.68	+0.0
3,935,919	+		LRK54_RS18020	0.74	-1.0
3,935,919	+		LRK54_RS18020	0.74	+0.2
3,935,919	+		LRK54_RS18020	0.74	+0.4
3,935,919	+		LRK54_RS18020	0.74	-0.1
3,935,919	+		LRK54_RS18020	0.74	-0.8
3,935,920	-		LRK54_RS18020	0.74	+0.5
3,935,920	-		LRK54_RS18020	0.74	+0.3
3,935,920	-		LRK54_RS18020	0.74	-0.2
3,935,920	-		LRK54_RS18020	0.74	-0.3
3,935,948	+		LRK54_RS18020	0.75	-0.3
3,935,948	+		LRK54_RS18020	0.75	-0.4
3,935,948	+		LRK54_RS18020	0.75	-0.9
3,935,948	+		LRK54_RS18020	0.75	-0.7
3,935,948	+		LRK54_RS18020	0.75	-2.4
3,935,948	+		LRK54_RS18020	0.75	-0.0
3,935,948	+		LRK54_RS18020	0.75	+0.2
3,935,949	-		LRK54_RS18020	0.75	+1.0
3,935,949	-		LRK54_RS18020	0.75	+1.1
3,935,949	-		LRK54_RS18020	0.75	-0.4
3,935,949	-		LRK54_RS18020	0.75	-0.3
3,935,949	-		LRK54_RS18020	0.75	-1.4
3,935,949	-		LRK54_RS18020	0.75	+1.1
3,935,949	-		LRK54_RS18020	0.75	+0.7
3,935,981	+		LRK54_RS18020	0.77	+0.5
3,935,981	+		LRK54_RS18020	0.77	-0.8
3,936,119	+		LRK54_RS18020	0.84	-0.3
3,936,119	+		LRK54_RS18020	0.84	+0.0
3,936,120	-		LRK54_RS18020	0.84	+1.7
3,936,120	-		LRK54_RS18020	0.84	-0.2
3,936,120	-		LRK54_RS18020	0.84	-1.2
3,936,320	+				-1.0
3,936,320	+				+0.5
3,936,320	+				+0.1
3,936,320	+				+0.3
3,936,320	+				+0.1
3,936,320	+				+0.2
3,936,320	+				-1.4
3,936,320	+				+0.9
3,936,320	+				-0.7
3,936,320	+				-1.4
3,936,320	+				+0.6
3,936,320	+				-1.8
3,936,320	+				+0.9
3,936,320	+				-0.3
3,936,320	+				-0.7
3,936,320	+				+0.1
3,936,320	+				+0.3
3,936,320	+				+0.8
3,936,320	+				+0.1
3,936,321	-				+1.0
3,936,321	-				-0.4
3,936,321	-				+0.6
3,936,321	-				+0.1
3,936,321	-				+0.2
3,936,321	-				-0.4
3,936,321	-				+0.5
3,936,321	-				-0.4
3,936,321	-				-0.2
3,936,321	-				+0.8
3,936,321	-				+0.2
3,936,321	-				+0.6
3,936,321	-				+0.5
3,936,321	-				+0.9
3,936,321	-				-0.3
3,936,321	-				+0.1
3,936,321	-				-0.6
3,936,321	-				+0.2
3,936,321	-				+0.1
3,936,321	-				-1.0
3,936,321	-				+0.1
3,936,338	+				+0.0
3,936,338	+				+1.6
3,936,338	+				-0.8
3,936,338	+				+0.2
3,936,338	+				-0.6
3,936,338	+				+0.9
3,936,338	+				+0.9
3,936,338	+				-0.3
3,936,339	-				-0.3
3,936,339	-				+0.1
3,936,339	-				-0.3
3,936,387	+				+0.9
3,936,387	+				-0.7
3,936,387	+				-1.0
3,936,388	-				-0.2
3,936,388	-				-0.0
3,936,440	+				-0.9
3,936,475	+				-0.6
3,936,475	+				-0.3
3,936,475	+				-0.8
3,936,475	+				+1.9
3,936,475	+				+0.6
3,936,475	+				-0.4
3,936,476	-				+0.7
3,936,476	-				+0.4
3,936,476	-				-0.4
3,936,476	-				-0.1
3,936,476	-				-0.5
3,936,476	-				+1.1
3,936,476	-				+0.1
3,936,476	-				-0.1
3,936,476	-				-0.8
3,936,521	+				+0.6
3,936,521	+				+0.3
3,936,521	+				+0.0
3,936,521	+				-0.3
3,936,521	+				-0.3
3,936,521	+				+0.7
3,936,522	-				+0.3
3,936,522	-				-0.4
3,936,522	-				+0.3
3,936,522	-				-1.0
3,936,522	-				+0.7
3,936,551	+				+0.0
3,936,551	+				-0.1
3,936,552	-				-0.7
3,936,552	-				+0.1
3,936,566	+		LRK54_RS18025	0.12	+1.3
3,936,566	+		LRK54_RS18025	0.12	-0.7
3,936,566	+		LRK54_RS18025	0.12	+0.4
3,936,566	+		LRK54_RS18025	0.12	+0.5
3,936,566	+		LRK54_RS18025	0.12	+0.2
3,936,566	+		LRK54_RS18025	0.12	-0.4
3,936,566	+		LRK54_RS18025	0.12	+0.1
3,936,566	+		LRK54_RS18025	0.12	-0.3
3,936,566	+				+0.0
3,936,566	+		LRK54_RS18025	0.12	+0.4
3,936,566	+		LRK54_RS18025	0.12	+0.5
3,936,566	+		LRK54_RS18025	0.12	+0.5
3,936,566	+		LRK54_RS18025	0.12	+1.5
3,936,566	+		LRK54_RS18025	0.12	+0.4
3,936,566	+		LRK54_RS18025	0.12	-0.6
3,936,566	+		LRK54_RS18025	0.12	-0.3
3,936,567	-		LRK54_RS18025	0.12	-0.6
3,936,567	-		LRK54_RS18025	0.12	-0.1
3,936,567	-		LRK54_RS18025	0.12	+1.2
3,936,567	-		LRK54_RS18025	0.12	+0.4
3,936,567	-		LRK54_RS18025	0.12	+0.2
3,936,567	-		LRK54_RS18025	0.12	+0.4
3,936,567	-		LRK54_RS18025	0.12	+0.7
3,936,567	-		LRK54_RS18025	0.12	+0.6
3,936,567	-		LRK54_RS18025	0.12	+0.6
3,936,567	-		LRK54_RS18025	0.12	+0.4
3,936,567	-		LRK54_RS18025	0.12	+1.0
3,936,567	-		LRK54_RS18025	0.12	+0.6
3,936,692	+		LRK54_RS18025	0.61	+2.2
3,936,692	+		LRK54_RS18025	0.61	+1.1
3,936,692	+		LRK54_RS18025	0.61	-0.4
3,936,692	+		LRK54_RS18025	0.61	+0.1
3,936,692	+		LRK54_RS18025	0.61	+0.7
3,936,692	+		LRK54_RS18025	0.61	+1.3
3,936,692	+		LRK54_RS18025	0.61	-0.9
3,936,692	+		LRK54_RS18025	0.61	+0.8
3,936,692	+		LRK54_RS18025	0.61	+0.1
3,936,693	-		LRK54_RS18025	0.61	+1.4
3,936,693	-		LRK54_RS18025	0.61	+0.3
3,936,693	-		LRK54_RS18025	0.61	-1.0
3,936,693	-		LRK54_RS18025	0.61	-0.4
3,936,693	-		LRK54_RS18025	0.61	-0.2
3,936,693	-		LRK54_RS18025	0.61	+0.0
3,936,693	-		LRK54_RS18025	0.61	-0.4
3,936,693	-		LRK54_RS18025	0.61	+0.2
3,936,701	+		LRK54_RS18025	0.64	-0.9
3,936,701	+		LRK54_RS18025	0.64	+0.4
3,936,701	+		LRK54_RS18025	0.64	-1.5
3,936,701	+		LRK54_RS18025	0.64	-0.0
3,936,701	+		LRK54_RS18025	0.64	-1.3
3,936,702	-		LRK54_RS18025	0.65	+0.5
3,936,702	-		LRK54_RS18025	0.65	+0.8
3,936,702	-		LRK54_RS18025	0.65	-0.0
3,936,702	-		LRK54_RS18025	0.65	+0.2
3,936,702	-		LRK54_RS18025	0.65	-0.2
3,936,702	-		LRK54_RS18025	0.65	+0.2
3,936,702	-		LRK54_RS18025	0.65	-1.0
3,936,702	-		LRK54_RS18025	0.65	-0.4
3,936,702	-		LRK54_RS18025	0.65	+0.4
3,936,702	-		LRK54_RS18025	0.65	-0.0
3,936,702	-		LRK54_RS18025	0.65	-0.5
3,936,702	-		LRK54_RS18025	0.65	-0.5
3,936,702	-		LRK54_RS18025	0.65	-1.4
3,936,702	-		LRK54_RS18025	0.65	+0.1
3,936,702	-		LRK54_RS18025	0.65	-1.4
3,936,792	+				-2.3
3,936,792	+				-0.4
3,936,792	+				-0.2
3,936,792	+				+1.6
3,936,792	+				+2.2
3,936,792	+				-0.3
3,936,792	+				-0.4
3,936,792	+				+0.3
3,936,792	+				+0.6
3,936,792	+				+0.1
3,936,793	-				-0.3
3,936,793	-				-1.0
3,936,793	-				-0.3
3,936,793	-				+1.5
3,936,793	-				+0.8
3,936,793	-				-1.2
3,936,793	-				+0.3
3,936,793	-				+0.0
3,936,793	-				+0.8
3,936,793	-				+1.2
3,936,793	-				+0.3
3,936,793	-				+0.0
3,936,793	-				-0.3
3,936,793	-				+0.3
3,936,831	+				+0.5
3,936,831	+				-1.4
3,936,831	+				-1.0
3,936,832	-				+0.1
3,936,835	+				-0.0
3,936,835	+				+0.9
3,936,835	+				-1.7
3,936,835	+				-0.2
3,936,835	+				-1.8
3,936,835	+				-0.5
3,936,835	+				+0.5
3,936,835	+				+0.7
3,936,835	+				+0.1
3,936,835	+				+0.6
3,936,835	+				+0.5
3,936,835	+				+1.4
3,936,835	+				-0.5
3,936,835	+				-2.3
3,936,835	+				+0.8
3,936,835	+				+0.4
3,936,835	+				+0.1
3,936,835	+				-0.4
3,936,835	+				-1.2
3,936,835	+				+0.3
3,936,835	+				+0.9
3,936,835	+				+0.1
3,936,835	+				-1.0
3,936,835	+				+0.6
3,936,835	+				-0.3
3,936,835	+				+0.5
3,936,835	+				-0.3
3,936,835	+				-1.1
3,936,835	+				+0.1
3,936,835	+				+0.6
3,936,835	+				-0.1
3,936,836	-				+1.2
3,936,836	-				-1.5
3,936,836	-				+0.4
3,936,836	-				+0.5
3,936,836	-				-0.2
3,936,836	-				+1.8
3,936,836	-				-0.3
3,936,836	-				+1.1
3,936,836	-				-1.2
3,936,836	-				-0.5
3,936,836	-				-0.6
3,936,836	-				+0.1
3,936,836	-				+1.6
3,936,836	-				+0.1
3,936,836	-				-0.1
3,936,836	-				+0.9
3,936,836	-				+0.1
3,936,836	-				-1.0
3,936,836	-				+0.2
3,936,836	-				+0.5
3,936,928	+				-1.0
3,937,561	+				-0.2
3,937,561	+				+0.7
3,937,561	+				+0.7
3,937,561	+				+0.8
3,937,561	+				+0.2
3,937,561	+				-2.0
3,937,561	+				+1.5
3,937,561	+				+1.2
3,937,561	+				+1.6
3,937,561	+				-0.4
3,937,561	+				+0.4
3,937,561	+				+0.0
3,937,561	+				-0.1
3,937,561	+				+0.7
3,937,561	+				+0.3