Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16640

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,653,591	+		LRK54_RS16635	0.50	-1.5
3,653,591	+		LRK54_RS16635	0.50	+2.1
3,653,591	+		LRK54_RS16635	0.50	-0.5
3,653,591	+		LRK54_RS16635	0.50	-0.2
3,653,591	+		LRK54_RS16635	0.50	+0.0
3,653,591	+		LRK54_RS16635	0.50	-0.5
3,653,591	+		LRK54_RS16635	0.50	-0.2
3,653,591	+		LRK54_RS16635	0.50	+0.6
3,653,591	+		LRK54_RS16635	0.50	-0.5
3,653,592	-		LRK54_RS16635	0.50	+0.3
3,653,592	-		LRK54_RS16635	0.50	-0.4
3,653,592	-		LRK54_RS16635	0.50	-0.1
3,653,592	-		LRK54_RS16635	0.50	+1.1
3,653,592	-		LRK54_RS16635	0.50	+0.9
3,653,592	-		LRK54_RS16635	0.50	+0.9
3,653,592	-		LRK54_RS16635	0.50	+0.4
3,653,592	-		LRK54_RS16635	0.50	-1.7
3,653,618	+		LRK54_RS16635	0.52	-1.6
3,653,618	+		LRK54_RS16635	0.52	-0.0
3,653,619	-		LRK54_RS16635	0.52	-0.9
3,653,772	+		LRK54_RS16635	0.63	+0.5
3,654,003	+		LRK54_RS16635	0.79	-1.9
3,654,003	+		LRK54_RS16635	0.79	-0.4
3,654,004	-		LRK54_RS16635	0.79	+0.0
3,654,083	+		LRK54_RS16635	0.85	+0.6
3,654,083	+		LRK54_RS16635	0.85	-1.2
3,654,083	+		LRK54_RS16635	0.85	-0.2
3,654,084	-		LRK54_RS16635	0.85	-0.1
3,654,084	-		LRK54_RS16635	0.85	-0.3
3,654,084	-		LRK54_RS16635	0.85	-0.3
3,654,216	+				+0.2
3,654,216	+				+1.2
3,654,216	+				+0.5
3,654,216	+				+0.3
3,654,216	+				-0.4
3,654,216	+				+0.2
3,654,216	+				-0.5
3,654,217	-				-0.8
3,654,217	-				+0.4
3,654,217	-				-1.5
3,654,217	-				+0.3
3,654,217	-				+0.8
3,654,217	-				-1.2
3,654,287	+				-0.5
3,654,287	+				+1.8
3,654,287	+				+0.2
3,654,287	+				-0.2
3,654,287	+				+0.2
3,654,287	+				-0.5
3,654,287	+				-0.4
3,654,287	+				-0.2
3,654,287	+				+0.2
3,654,287	+				+0.2
3,654,287	+				+0.9
3,654,287	+				-0.3
3,654,287	+				+0.5
3,654,287	+				-0.4
3,654,287	+				+0.8
3,654,287	+				+0.1
3,654,287	+				+0.8
3,654,288	-				-0.1
3,654,288	-				+0.4
3,654,288	-				+2.1
3,654,288	-				+1.1
3,654,288	-				+0.3
3,654,288	-				-0.9
3,654,288	-				+0.3
3,654,288	-				-1.2
3,654,288	-				-0.9
3,654,288	-				+0.8
3,654,288	-				-0.7
3,654,288	-				+0.4
3,654,288	-				-0.6
3,654,288	-				+0.3
3,654,288	-				+0.5
3,654,319	+				-0.5
3,654,319	+				+0.9
3,654,319	+				-0.8
3,654,319	+				+0.2
3,654,319	+				+0.2
3,654,319	+				+0.2
3,654,320	-				-0.0
3,654,320	-				+0.5
3,654,320	-				+0.5
3,654,320	-				-1.1
3,654,320	-				+1.6
3,654,320	-				-0.0
3,654,320	-				+0.1
3,654,320	-				+1.0
3,654,320	-				-0.5
3,654,320	-				-0.4
3,654,320	-				-0.4
3,654,320	-				+0.2
3,654,323	+				+0.7
3,654,323	+				+0.3
3,654,323	+				+0.7
3,654,323	+				-0.4
3,654,323	+				+0.2
3,654,323	+				+0.2
3,654,323	+				-0.1
3,654,323	+				+0.5
3,654,323	+				-0.4
3,654,324	-				-0.5
3,654,324	-				+1.2
3,654,324	-				-0.3
3,654,324	-				-1.4
3,654,324	-				-0.3
3,654,324	-				-0.6
3,654,324	-				+0.5
3,654,324	-				+1.4
3,654,324	-				-0.1
3,654,324	-				-1.0
3,654,370	+				-0.4
3,654,371	-				+0.3
3,654,371	-				+1.0
3,654,371	-				-0.2
3,654,488	+				-0.8
3,654,488	+				+0.2
3,654,548	-		LRK54_RS16640	0.15	+0.2
3,654,548	-		LRK54_RS16640	0.15	+0.2
3,654,548	-		LRK54_RS16640	0.15	+0.5
3,654,608	+		LRK54_RS16640	0.21	-1.5
3,654,608	+		LRK54_RS16640	0.21	+0.5
3,654,608	+		LRK54_RS16640	0.21	+1.5
3,654,609	-		LRK54_RS16640	0.21	-0.5
3,654,863	+		LRK54_RS16640	0.46	-0.2
3,654,863	+		LRK54_RS16640	0.46	-0.4
3,654,863	+		LRK54_RS16640	0.46	-0.0
3,654,863	+		LRK54_RS16640	0.46	-0.4
3,654,863	+		LRK54_RS16640	0.46	+0.7
3,654,863	+		LRK54_RS16640	0.46	+0.4
3,654,863	+		LRK54_RS16640	0.46	-0.4
3,654,864	-		LRK54_RS16640	0.46	+0.8
3,654,864	-		LRK54_RS16640	0.46	+1.3
3,654,864	-		LRK54_RS16640	0.46	+0.4
3,654,864	-		LRK54_RS16640	0.46	+0.4
3,654,864	-		LRK54_RS16640	0.46	-0.3
3,654,864	-		LRK54_RS16640	0.46	+1.5
3,654,864	-		LRK54_RS16640	0.46	-0.9
3,654,864	-		LRK54_RS16640	0.46	+0.7
3,654,864	-		LRK54_RS16640	0.46	+1.5
3,655,364	+				-0.1
3,655,364	+				-0.1
3,655,365	-				+0.3
3,655,365	-				-0.6
3,655,365	-				-1.1
3,655,403	+				-0.5
3,655,403	+				+0.0
3,655,404	-				-0.0
3,655,404	-				+1.3
3,655,824	+		LRK54_RS16645	0.59	-0.2
3,655,824	+		LRK54_RS16645	0.59	-1.4
3,655,824	+		LRK54_RS16645	0.59	-0.4
3,655,824	+		LRK54_RS16645	0.59	-0.3
3,655,824	+		LRK54_RS16645	0.59	-0.0
3,655,824	+		LRK54_RS16645	0.59	-0.4
3,655,824	+		LRK54_RS16645	0.59	+0.6
3,655,824	+		LRK54_RS16645	0.59	-0.2
3,655,824	+		LRK54_RS16645	0.59	+0.3
3,655,824	+		LRK54_RS16645	0.59	+0.4
3,655,824	+		LRK54_RS16645	0.59	+0.1
3,655,824	+		LRK54_RS16645	0.59	-0.0
3,655,825	-		LRK54_RS16645	0.59	-0.2
3,655,825	-		LRK54_RS16645	0.59	-0.2
3,655,825	-		LRK54_RS16645	0.59	+0.3
3,655,825	-		LRK54_RS16645	0.59	+0.0
3,655,825	-		LRK54_RS16645	0.59	+0.1
3,655,825	-		LRK54_RS16645	0.59	+0.4
3,655,825	-		LRK54_RS16645	0.59	-1.0
3,655,825	-		LRK54_RS16645	0.59	-1.3
3,656,058	+				-1.1
3,656,058	+				-0.0
3,656,058	+				+0.6
3,656,058	+				+0.1
3,656,058	+				+1.3
3,656,058	+				+1.3
3,656,058	+				+0.2
3,656,058	+				-0.8
3,656,058	+				+1.1
3,656,058	+				+0.1
3,656,058	+				-0.2
3,656,058	+				+1.0
3,656,058	+				-1.3
3,656,058	+				+0.5
3,656,058	+				-0.3
3,656,058	+				-0.4
3,656,058	+				-0.1
3,656,058	+				-0.2
3,656,058	+				+0.2
3,656,058	+				-1.5
3,656,058	+				+0.3
3,656,058	+				-0.1
3,656,058	+				-0.1
3,656,059	-				-0.5
3,656,059	-				+0.3
3,656,059	-				-0.5
3,656,059	-				+0.1
3,656,059	-				-0.3
3,656,059	-				-0.5
3,656,059	-				-0.0
3,656,059	-				+0.5
3,656,059	-				-1.6
3,656,059	-				+0.3
3,656,059	-				-0.2
3,656,059	-				+0.5
3,656,059	-				-0.1
3,656,059	-				+0.3
3,656,059	-				+0.2
3,656,059	-				+0.3
3,656,059	-				-0.2
3,656,059	-				+0.0
3,656,059	-				-0.4
3,656,059	-				-0.4
3,656,059	-				-0.9
3,656,059	-				-1.2
3,656,059	-				-0.0
3,656,059	-				+0.8
3,656,059	-				-0.8
3,656,059	-				-1.8
3,656,365	+		LRK54_RS16650	0.22	-1.0
3,656,366	-		LRK54_RS16650	0.22	-0.0
3,656,368	+		LRK54_RS16650	0.23	+0.3
3,656,368	+		LRK54_RS16650	0.23	+0.9
3,656,369	-		LRK54_RS16650	0.23	-0.8