Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15735

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,465,340	+		LRK54_RS15725	0.80	+0.5
3,465,340	+		LRK54_RS15725	0.80	+0.2
3,465,340	+		LRK54_RS15725	0.80	-0.9
3,465,340	+		LRK54_RS15725	0.80	-0.1
3,465,340	+		LRK54_RS15725	0.80	+0.2
3,465,340	+		LRK54_RS15725	0.80	-0.7
3,465,341	-		LRK54_RS15725	0.80	+0.0
3,465,341	-		LRK54_RS15725	0.80	-0.3
3,465,341	-		LRK54_RS15725	0.80	+0.1
3,465,341	-		LRK54_RS15725	0.80	-1.2
3,465,341	-		LRK54_RS15725	0.80	+0.5
3,465,467	-		LRK54_RS15725	0.90	+0.1
3,465,467	-		LRK54_RS15725	0.90	+0.5
3,465,505	+				+0.6
3,465,505	+				-0.7
3,465,505	+				+1.3
3,465,506	-				-0.7
3,465,506	-				+0.1
3,465,506	-				+0.3
3,465,506	-				+0.2
3,465,615	+				+0.9
3,465,615	+				-1.0
3,465,615	+				-0.7
3,465,615	+				-0.6
3,465,615	+				+0.7
3,465,615	+				-0.5
3,465,615	+				+1.3
3,465,615	+				-0.8
3,465,615	+				-0.5
3,465,615	+				-0.0
3,465,615	+				+2.2
3,465,615	+				+0.8
3,465,615	+				+0.7
3,465,615	+				-0.4
3,465,615	+				+0.3
3,465,615	+				-1.3
3,465,615	+				-0.2
3,465,615	+				-0.5
3,465,615	+				-1.1
3,465,615	+				-2.5
3,465,615	+				-0.2
3,465,615	+				-0.4
3,465,615	+				-0.5
3,465,615	+				+0.1
3,465,615	+				-0.0
3,465,615	+				-0.4
3,465,615	+				+0.4
3,465,615	+				+0.0
3,465,616	-				-0.1
3,465,616	-				-0.0
3,465,616	-				-1.1
3,465,616	-				+0.6
3,465,616	-				+0.0
3,465,616	-				-0.7
3,465,616	-				+0.1
3,465,616	-				-0.8
3,465,616	-				-0.8
3,465,616	-				-1.6
3,465,616	-				-0.0
3,465,616	-				+0.5
3,465,616	-				-1.3
3,465,616	-				-0.2
3,465,616	-				+0.6
3,465,616	-				-0.3
3,465,616	-				-0.9
3,465,616	-				+0.7
3,465,616	-				+0.1
3,465,616	-				-0.3
3,465,663	-				+1.0
3,465,688	+				+0.1
3,465,688	+				-0.3
3,465,688	+				+0.5
3,465,688	+				-0.1
3,465,688	+				-0.9
3,465,688	+				+0.6
3,465,688	+				-0.2
3,465,688	+				-0.2
3,465,688	+				-0.6
3,465,688	+				+0.7
3,465,688	+				+1.5
3,465,688	+				+0.8
3,465,688	+				+1.6
3,465,688	+				-0.2
3,465,688	+				-0.0
3,465,688	+				+0.7
3,465,689	-				-1.0
3,465,689	-				+1.4
3,465,689	-				+1.0
3,465,689	-				-0.1
3,465,689	-				+0.3
3,465,689	-				+0.9
3,465,689	-				-1.6
3,465,689	-				+0.3
3,465,689	-				+0.5
3,465,689	-				-0.9
3,465,689	-				-0.2
3,465,689	-				-0.5
3,465,811	+		LRK54_RS15730	0.12	-0.1
3,465,811	+		LRK54_RS15730	0.12	-0.1
3,465,811	+		LRK54_RS15730	0.12	-0.1
3,465,811	+		LRK54_RS15730	0.12	-0.2
3,465,811	+		LRK54_RS15730	0.12	+0.1
3,465,811	+		LRK54_RS15730	0.12	+2.3
3,465,811	+		LRK54_RS15730	0.12	+0.5
3,465,812	-		LRK54_RS15730	0.12	-1.7
3,465,812	-		LRK54_RS15730	0.12	-0.1
3,465,812	-		LRK54_RS15730	0.12	-0.6
3,465,824	+		LRK54_RS15730	0.15	-0.3
3,465,824	+		LRK54_RS15730	0.15	-0.9
3,465,824	+		LRK54_RS15730	0.15	+0.0
3,465,825	-		LRK54_RS15730	0.15	+0.0
3,465,825	-		LRK54_RS15730	0.15	+0.0
3,465,825	-		LRK54_RS15730	0.15	+0.9
3,465,825	-		LRK54_RS15730	0.15	-1.6
3,465,825	-		LRK54_RS15730	0.15	-0.0
3,465,825	-		LRK54_RS15730	0.15	+0.2
3,465,825	-		LRK54_RS15730	0.15	+0.3
3,466,165	+				-0.5
3,466,165	+				+0.1
3,466,165	+				-0.3
3,466,166	-				-0.2
3,466,166	-				-0.6
3,466,166	-				+0.1
3,466,166	-				+0.4
3,466,166	-				-0.3
3,466,166	-				-1.8
3,466,226	-				-0.1
3,466,231	+				-0.2
3,466,231	+				-0.2
3,466,231	+				+0.0
3,466,231	+				-0.5
3,466,231	+				-0.3
3,466,231	+				-0.5
3,466,231	+				-0.0
3,466,232	-				+0.2
3,466,232	-				-0.4
3,466,232	-				+0.5
3,466,232	-				-0.1
3,466,232	-				-0.4
3,466,232	-				+0.3
3,466,232	-				+0.1
3,466,232	-				+1.2
3,466,232	-				-0.8
3,466,232	-				+0.2
3,466,232	-				-0.3
3,466,239	+				-0.6
3,466,240	-				+0.4
3,466,246	+				+0.1
3,466,254	+				+0.5
3,466,254	+				-0.8
3,466,255	-				+0.1
3,466,275	+				+1.4
3,466,276	-				+0.1
3,466,599	+		LRK54_RS15735	0.68	-0.3
3,466,599	+		LRK54_RS15735	0.68	-0.8
3,466,599	+		LRK54_RS15735	0.68	+0.6
3,466,599	+		LRK54_RS15735	0.68	-1.3
3,466,599	+		LRK54_RS15735	0.68	-0.3
3,466,599	+		LRK54_RS15735	0.68	-1.7
3,466,599	+		LRK54_RS15735	0.68	+0.8
3,466,599	+		LRK54_RS15735	0.68	-0.2
3,466,599	+		LRK54_RS15735	0.68	-1.0
3,466,599	+		LRK54_RS15735	0.68	-1.9
3,466,600	-		LRK54_RS15735	0.68	+0.3
3,466,600	-		LRK54_RS15735	0.68	+1.1
3,466,600	-		LRK54_RS15735	0.68	+0.9
3,466,600	-		LRK54_RS15735	0.68	+2.3
3,466,600	-		LRK54_RS15735	0.68	+0.2
3,466,600	-		LRK54_RS15735	0.68	+0.8
3,466,600	-		LRK54_RS15735	0.68	-0.2
3,466,600	-		LRK54_RS15735	0.68	+0.0
3,466,600	-		LRK54_RS15735	0.68	+0.7
3,466,600	-		LRK54_RS15735	0.68	+1.1
3,466,600	-		LRK54_RS15735	0.68	+0.2
3,466,600	-		LRK54_RS15735	0.68	+0.4
3,466,608	+		LRK54_RS15735	0.69	+0.1
3,466,609	-		LRK54_RS15735	0.70	+0.5
3,466,609	-		LRK54_RS15735	0.70	+0.0
3,466,609	-		LRK54_RS15735	0.70	+0.4
3,466,609	-		LRK54_RS15735	0.70	+0.7
3,466,641	+		LRK54_RS15735	0.76	-0.0
3,466,641	+		LRK54_RS15735	0.76	+0.5
3,466,641	+		LRK54_RS15735	0.76	+0.3
3,466,671	+		LRK54_RS15735	0.83	-0.2
3,466,671	+		LRK54_RS15735	0.83	-1.9
3,466,672	-		LRK54_RS15735	0.83	+0.8
3,466,672	-		LRK54_RS15735	0.83	+0.8
3,466,672	-		LRK54_RS15735	0.83	+0.4
3,466,672	-		LRK54_RS15735	0.83	+0.7
3,466,672	-		LRK54_RS15735	0.83	+0.3
3,466,763	+				+0.1
3,466,764	-				-0.4
3,466,764	-				+0.4
3,466,768	-				+0.7
3,466,790	+				+0.0
3,466,790	+				+0.4
3,466,791	-				-2.0
3,466,791	-				+0.1
3,467,226	+				-0.7
3,467,227	-				+0.5
3,467,227	-				+0.7
3,467,480	+				+0.9
3,467,480	+				+0.2
3,467,480	+				+0.1
3,467,480	+				+0.1
3,467,480	+				+0.5
3,467,481	-				+0.2
3,467,481	-				+0.7
3,467,537	+				-0.0
3,467,538	-				-0.2
3,467,538	-				-0.3
3,467,538	-				+0.0
3,467,538	-				+0.2
3,467,538	-				-0.1
3,467,538	-				+0.5
3,467,589	+				-0.6
3,467,589	+				-0.8
3,467,589	+				+0.4
3,467,589	+				+0.0
3,467,590	-				-0.4
3,467,590	-				-1.6
3,467,590	-				+0.5
3,467,590	-				-0.0
3,467,590	-				+0.3
3,467,590	-				+0.9
3,467,590	-				-0.6
3,467,590	-				-0.2
3,467,590	-				-0.4