Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15360

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,389,352	+				-0.2
3,389,352	+				-1.1
3,389,352	+				+0.1
3,389,352	+				-0.4
3,389,352	+				-1.2
3,389,352	+				+0.2
3,389,352	+				-0.3
3,389,352	+				+0.8
3,389,352	+				-1.6
3,389,352	+				-0.4
3,389,352	+				-1.2
3,389,352	+				-0.3
3,389,352	+				-1.1
3,389,352	+				+0.5
3,389,352	+				-0.5
3,389,352	+				-0.6
3,389,352	+				+0.5
3,389,352	+				-0.2
3,389,352	+				-0.7
3,389,353	-				-0.1
3,389,353	-				-0.7
3,389,353	-				-0.2
3,389,353	-				+0.3
3,389,353	-				-0.3
3,389,353	-				+0.5
3,389,353	-				-0.0
3,389,353	-				+0.5
3,389,353	-				+2.2
3,389,353	-				-0.4
3,389,353	-				-0.5
3,389,353	-				+0.4
3,389,353	-				-0.2
3,389,353	-				-0.1
3,389,356	+				-0.1
3,389,356	+				-1.5
3,389,356	+				-1.2
3,389,356	+				-0.0
3,389,356	+				-0.1
3,389,357	-				-0.2
3,389,357	-				-0.5
3,389,357	-				-0.0
3,389,451	+				+0.2
3,389,451	+				-0.2
3,389,452	-				+0.6
3,389,452	-				-0.1
3,389,452	-				+0.8
3,389,461	+				-0.4
3,389,461	+				+1.1
3,389,461	+				+0.2
3,389,461	+				-0.9
3,389,462	-				-1.3
3,389,480	+				-0.4
3,389,480	+				-0.3
3,389,480	+				+0.0
3,389,480	+				-0.5
3,389,480	+				+0.1
3,389,480	+				-0.7
3,389,480	+				+0.8
3,389,480	+				-0.6
3,389,480	+				+0.5
3,389,480	+				+0.1
3,389,480	+				-1.7
3,389,481	-				-0.2
3,389,481	-				-0.9
3,389,481	-				-0.0
3,389,481	-				+0.8
3,389,481	-				-0.6
3,389,481	-				-0.2
3,389,481	-				-0.4
3,389,481	-				-1.0
3,389,481	-				-0.5
3,389,481	-				-0.2
3,389,481	-				-0.5
3,389,560	+				-1.4
3,389,560	+				-0.6
3,389,560	+				-0.8
3,389,560	+				-1.4
3,389,561	-				-0.2
3,389,662	+		LRK54_RS15355	0.11	+0.9
3,389,662	+		LRK54_RS15355	0.11	-1.5
3,389,662	+		LRK54_RS15355	0.11	-0.9
3,389,662	+		LRK54_RS15355	0.11	+0.4
3,389,663	-		LRK54_RS15355	0.11	-0.8
3,389,663	-		LRK54_RS15355	0.11	-0.3
3,389,663	-		LRK54_RS15355	0.11	-1.9
3,389,663	-		LRK54_RS15355	0.11	-0.5
3,389,663	-		LRK54_RS15355	0.11	-0.1
3,389,677	+		LRK54_RS15355	0.13	-0.2
3,389,677	+		LRK54_RS15355	0.13	+0.2
3,389,686	+		LRK54_RS15355	0.15	-0.8
3,389,686	+		LRK54_RS15355	0.15	-0.4
3,389,686	+		LRK54_RS15355	0.15	+0.5
3,389,687	-		LRK54_RS15355	0.15	-0.2
3,389,687	-		LRK54_RS15355	0.15	+0.3
3,389,687	-		LRK54_RS15355	0.15	-0.2
3,389,687	-		LRK54_RS15355	0.15	-0.5
3,389,687	-		LRK54_RS15355	0.15	-0.0
3,389,732	+		LRK54_RS15355	0.21	-0.5
3,389,733	-		LRK54_RS15355	0.21	-0.0
3,389,733	-		LRK54_RS15355	0.21	-0.2
3,389,733	-		LRK54_RS15355	0.21	+0.1
3,389,740	+		LRK54_RS15355	0.22	+0.0
3,389,740	+		LRK54_RS15355	0.22	+0.2
3,389,740	+		LRK54_RS15355	0.22	+0.6
3,389,740	+		LRK54_RS15355	0.22	+0.5
3,389,740	+		LRK54_RS15355	0.22	+0.1
3,389,740	+		LRK54_RS15355	0.22	-0.2
3,389,740	+		LRK54_RS15355	0.22	+0.5
3,389,740	+		LRK54_RS15355	0.22	-0.6
3,389,740	+		LRK54_RS15355	0.22	-1.0
3,389,740	+		LRK54_RS15355	0.22	+1.1
3,389,740	+		LRK54_RS15355	0.22	+0.2
3,389,740	+		LRK54_RS15355	0.22	-0.8
3,389,740	+		LRK54_RS15355	0.22	+0.0
3,389,740	+		LRK54_RS15355	0.22	-0.5
3,389,740	+		LRK54_RS15355	0.22	-2.1
3,389,740	+		LRK54_RS15355	0.22	+0.4
3,389,740	+		LRK54_RS15355	0.22	-0.0
3,389,741	-		LRK54_RS15355	0.22	-0.4
3,389,741	-		LRK54_RS15355	0.22	-0.6
3,389,741	-		LRK54_RS15355	0.22	-0.0
3,389,741	-		LRK54_RS15355	0.22	+0.4
3,389,741	-		LRK54_RS15355	0.22	-0.8
3,389,741	-		LRK54_RS15355	0.22	+0.0
3,389,741	-		LRK54_RS15355	0.22	-0.1
3,389,741	-		LRK54_RS15355	0.22	-1.9
3,389,741	-		LRK54_RS15355	0.22	-0.7
3,389,741	-		LRK54_RS15355	0.22	-0.2
3,389,741	-		LRK54_RS15355	0.22	+1.5
3,389,741	-		LRK54_RS15355	0.22	-0.5
3,389,741	-		LRK54_RS15355	0.22	+1.2
3,389,741	-		LRK54_RS15355	0.22	-0.5
3,389,741	-		LRK54_RS15355	0.22	+0.1
3,389,741	-		LRK54_RS15355	0.22	+0.5
3,389,741	-		LRK54_RS15355	0.22	-0.1
3,389,830	+		LRK54_RS15355	0.35	-0.1
3,389,830	+		LRK54_RS15355	0.35	-0.3
3,389,830	+		LRK54_RS15355	0.35	-0.2
3,389,830	+		LRK54_RS15355	0.35	+0.1
3,389,830	+		LRK54_RS15355	0.35	-0.3
3,389,830	+		LRK54_RS15355	0.35	+0.4
3,389,830	+		LRK54_RS15355	0.35	-0.5
3,389,831	-		LRK54_RS15355	0.35	-0.6
3,389,831	-		LRK54_RS15355	0.35	+0.3
3,389,831	-		LRK54_RS15355	0.35	+0.1
3,389,831	-		LRK54_RS15355	0.35	+0.7
3,389,831	-		LRK54_RS15355	0.35	-0.6
3,389,831	-		LRK54_RS15355	0.35	-1.0
3,389,831	-		LRK54_RS15355	0.35	-0.3
3,389,831	-		LRK54_RS15355	0.35	+0.2
3,389,831	-		LRK54_RS15355	0.35	-0.0
3,389,831	-		LRK54_RS15355	0.35	-0.5
3,389,839	+		LRK54_RS15355	0.36	-0.5
3,389,840	-		LRK54_RS15355	0.36	-1.0
3,389,840	-		LRK54_RS15355	0.36	-0.2
3,389,840	-		LRK54_RS15355	0.36	+0.3
3,389,840	-		LRK54_RS15355	0.36	-0.1
3,389,887	+		LRK54_RS15355	0.42	-0.5
3,389,887	+		LRK54_RS15355	0.42	+0.9
3,389,887	+		LRK54_RS15355	0.42	-0.6
3,389,887	+		LRK54_RS15355	0.42	+0.4
3,389,888	-		LRK54_RS15355	0.43	-0.6
3,389,888	-		LRK54_RS15355	0.43	+0.4
3,389,888	-		LRK54_RS15355	0.43	-0.3
3,389,888	-		LRK54_RS15355	0.43	+0.2
3,389,888	-		LRK54_RS15355	0.43	-0.2
3,389,932	+		LRK54_RS15355	0.49	-1.3
3,389,932	+		LRK54_RS15355	0.49	+0.6
3,389,932	+		LRK54_RS15355	0.49	-0.6
3,389,933	-		LRK54_RS15355	0.49	-0.8
3,389,933	-		LRK54_RS15355	0.49	-0.0
3,389,938	+		LRK54_RS15355	0.50	-0.3
3,389,938	+		LRK54_RS15355	0.50	+0.8
3,389,938	+		LRK54_RS15355	0.50	+1.3
3,389,938	+		LRK54_RS15355	0.50	-0.7
3,389,938	+		LRK54_RS15355	0.50	-1.4
3,389,938	+		LRK54_RS15355	0.50	+0.2
3,389,938	+		LRK54_RS15355	0.50	-0.5
3,389,939	-		LRK54_RS15355	0.50	+0.0
3,389,939	-		LRK54_RS15355	0.50	-0.0
3,389,939	-		LRK54_RS15355	0.50	+1.9
3,389,939	-		LRK54_RS15355	0.50	+0.8
3,389,939	-		LRK54_RS15355	0.50	-0.9
3,389,940	+		LRK54_RS15355	0.50	-0.2
3,389,941	-		LRK54_RS15355	0.50	-1.2
3,389,989	+		LRK54_RS15355	0.57	+0.5
3,389,989	+		LRK54_RS15355	0.57	-1.1
3,389,990	-		LRK54_RS15355	0.57	-0.8
3,389,990	-		LRK54_RS15355	0.57	-0.3
3,390,004	+		LRK54_RS15355	0.59	+0.1
3,390,005	-		LRK54_RS15355	0.59	-0.4
3,390,005	-		LRK54_RS15355	0.59	-1.2
3,390,005	-		LRK54_RS15355	0.59	-0.3
3,390,005	-		LRK54_RS15355	0.59	-0.3
3,390,041	+		LRK54_RS15355	0.64	-1.9
3,390,041	+		LRK54_RS15355	0.64	+0.2
3,390,042	-		LRK54_RS15355	0.64	+1.0
3,390,058	+		LRK54_RS15355	0.66	-0.7
3,390,058	+		LRK54_RS15355	0.66	+0.0
3,390,058	+		LRK54_RS15355	0.66	+0.4
3,390,059	-		LRK54_RS15355	0.66	-0.3
3,390,059	-		LRK54_RS15355	0.66	-1.0
3,390,059	-		LRK54_RS15355	0.66	-0.2
3,390,073	-		LRK54_RS15355	0.68	+0.3
3,390,122	+		LRK54_RS15355	0.75	-0.7
3,390,122	+		LRK54_RS15355	0.75	+0.2
3,390,123	-		LRK54_RS15355	0.75	-0.8
3,390,123	-		LRK54_RS15355	0.75	-0.9
3,390,123	-		LRK54_RS15355	0.75	-0.8
3,390,123	-		LRK54_RS15355	0.75	-0.3
3,390,123	-		LRK54_RS15355	0.75	-1.5
3,390,157	+		LRK54_RS15355	0.80	-0.4
3,390,157	+		LRK54_RS15355	0.80	-0.0
3,390,157	+		LRK54_RS15355	0.80	-0.8
3,390,157	+		LRK54_RS15355	0.80	-0.5
3,390,158	-		LRK54_RS15355	0.80	-0.7
3,390,158	-		LRK54_RS15355	0.80	-1.5
3,390,158	-		LRK54_RS15355	0.80	-0.5
3,390,158	-		LRK54_RS15355	0.80	-0.9
3,390,158	-		LRK54_RS15355	0.80	+0.4
3,390,158	-		LRK54_RS15355	0.80	+0.2
3,390,158	-		LRK54_RS15355	0.80	+0.8
3,390,158	-		LRK54_RS15355	0.80	+0.5
3,390,158	-		LRK54_RS15355	0.80	-0.3
3,390,158	-		LRK54_RS15355	0.80	-1.9
3,390,158	-		LRK54_RS15355	0.80	+1.1
3,390,158	-		LRK54_RS15355	0.80	-2.3
3,390,158	-		LRK54_RS15355	0.80	-0.3
3,390,158	-		LRK54_RS15355	0.80	-0.6
3,390,158	-		LRK54_RS15355	0.80	-0.1
3,390,313	+				-0.5
3,390,313	+				-1.2
3,390,313	+				-1.6
3,390,313	+				+0.1
3,390,314	-				-0.0
3,390,314	-				+0.7
3,390,314	-				+0.8
3,390,461	+		LRK54_RS15360	0.14	-1.4
3,390,461	+		LRK54_RS15360	0.14	-0.0
3,390,461	+		LRK54_RS15360	0.14	+0.2
3,390,461	+		LRK54_RS15360	0.14	+0.6
3,390,462	-		LRK54_RS15360	0.14	+1.2
3,390,462	-		LRK54_RS15360	0.14	-1.1
3,390,462	-		LRK54_RS15360	0.14	+0.3
3,390,622	+		LRK54_RS15360	0.34	+0.8
3,390,623	-		LRK54_RS15360	0.34	+1.3
3,390,623	-		LRK54_RS15360	0.34	+2.1
3,390,819	+		LRK54_RS15360	0.58	+0.4
3,390,821	+		LRK54_RS15360	0.58	-0.5
3,390,822	-		LRK54_RS15360	0.59	+0.6
3,390,822	-		LRK54_RS15360	0.59	-0.1
3,390,822	-		LRK54_RS15360	0.59	+0.4
3,390,989	+		LRK54_RS15360	0.79	+0.1
3,391,132	-				-0.1
3,391,132	-				-0.5
3,391,132	-				-0.3
3,391,173	+				-0.4
3,391,173	+				-0.3
3,391,173	+				-0.2
3,391,173	+				+0.4
3,391,173	+				+0.0
3,391,173	+				-0.6
3,391,173	+				+0.5
3,391,173	+				+0.4
3,391,174	-				+1.1
3,391,174	-				+0.1
3,391,174	-				-0.1
3,391,174	-				+0.2
3,391,174	-				+0.8
3,391,174	-				-0.3
3,391,189	+				-0.8
3,391,189	+				+0.3
3,391,189	+				+0.2
3,391,189	+				+1.1
3,391,189	+				+0.1
3,391,189	+				-0.5
3,391,189	+				+0.6
3,391,189	+				-0.1
3,391,189	+				-0.6
3,391,189	+				-0.1
3,391,189	+				+0.8
3,391,190	-				-0.3
3,391,190	-				-0.3
3,391,190	-				+0.6
3,391,190	-				-0.6
3,391,190	-				+0.9
3,391,190	-				+0.1
3,391,190	-				+0.4
3,391,190	-				-0.7
3,391,190	-				+0.4
3,391,204	+				+1.3
3,391,204	+				+0.4
3,391,204	+				+0.3
3,391,205	-				-1.3
3,391,205	-				-0.5
3,391,205	-				+0.8
3,391,205	-				+0.5
3,391,219	+				+1.3
3,391,220	-				-0.9
3,391,220	-				+1.1
3,391,220	-				-2.6
3,391,223	+				-0.6
3,391,223	+				+1.1
3,391,223	+				-0.7
3,391,223	+				-0.0
3,391,223	+				-1.3
3,391,223	+				-1.0
3,391,224	-				-0.3
3,391,224	-				-0.2
3,391,224	-				-1.4
3,391,224	-				-0.8
3,391,224	-				-0.5
3,391,224	-				-0.2
3,391,230	+				+0.6
3,391,302	+				+0.8
3,391,302	+				-0.4
3,391,302	+				-1.2
3,391,302	+				+0.3
3,391,303	-				-0.2
3,391,303	-				-0.0
3,391,303	-				+0.2
3,391,415	+		LRK54_RS15365	0.18	-1.5
3,391,416	-		LRK54_RS15365	0.19	+0.4
3,391,416	-		LRK54_RS15365	0.19	+0.3
3,391,510	+		LRK54_RS15365	0.78	+0.8
3,391,511	-		LRK54_RS15365	0.79	+0.8
3,391,648	+		LRK54_RS15370	0.24	-0.7
3,391,649	-		LRK54_RS15370	0.24	+0.1
3,391,649	-		LRK54_RS15370	0.24	-1.8
3,391,702	+		LRK54_RS15370	0.36	-1.0
3,391,702	+		LRK54_RS15370	0.36	+0.5
3,391,702	+		LRK54_RS15370	0.36	-0.6
3,391,702	+		LRK54_RS15370	0.36	+0.4
3,391,702	+		LRK54_RS15370	0.36	+0.1
3,391,702	+		LRK54_RS15370	0.36	-0.1
3,391,702	+		LRK54_RS15370	0.36	-0.3
3,391,702	+		LRK54_RS15370	0.36	+0.5
3,391,702	+		LRK54_RS15370	0.36	-1.1
3,391,702	+		LRK54_RS15370	0.36	+1.0
3,391,702	+		LRK54_RS15370	0.36	-1.8
3,391,702	+		LRK54_RS15370	0.36	+0.6
3,391,703	-		LRK54_RS15370	0.36	+1.1
3,391,703	-		LRK54_RS15370	0.36	-0.9
3,391,703	-		LRK54_RS15370	0.36	-0.3
3,391,703	-		LRK54_RS15370	0.36	-0.1
3,391,703	-		LRK54_RS15370	0.36	-1.0
3,391,703	-		LRK54_RS15370	0.36	-0.1
3,391,703	-		LRK54_RS15370	0.36	-0.1
3,391,703	-		LRK54_RS15370	0.36	+0.9
3,391,703	-		LRK54_RS15370	0.36	+0.8
3,391,703	-		LRK54_RS15370	0.36	+0.4
3,391,703	-		LRK54_RS15370	0.36	-0.5
3,391,716	+		LRK54_RS15370	0.39	-0.5
3,391,717	-		LRK54_RS15370	0.39	-0.5
3,391,792	+		LRK54_RS15370	0.56	+1.7
3,391,792	+		LRK54_RS15370	0.56	-0.0
3,391,792	+		LRK54_RS15370	0.56	+1.1
3,391,792	+		LRK54_RS15370	0.56	-1.0
3,391,792	+		LRK54_RS15370	0.56	-0.5
3,391,792	+		LRK54_RS15370	0.56	-0.9
3,391,792	+		LRK54_RS15370	0.56	-0.7
3,391,792	+		LRK54_RS15370	0.56	-1.2
3,391,793	-		LRK54_RS15370	0.56	-0.5
3,391,793	-		LRK54_RS15370	0.56	-0.6
3,391,793	-		LRK54_RS15370	0.56	-0.3
3,391,793	-		LRK54_RS15370	0.56	-0.4
3,391,793	-		LRK54_RS15370	0.56	+0.8
3,391,793	-		LRK54_RS15370	0.56	-0.0
3,391,793	-		LRK54_RS15370	0.56	+0.3
3,391,793	-		LRK54_RS15370	0.56	-0.5
3,391,793	-		LRK54_RS15370	0.56	-0.0
3,391,879	+		LRK54_RS15370	0.76	-1.0
3,391,900	+		LRK54_RS15370	0.80	+1.2
3,391,900	+		LRK54_RS15370	0.80	+0.9
3,391,952	-				+0.4
3,391,952	-				+0.1
3,391,952	-				-0.0
3,391,952	-				-1.1
3,391,952	-				+0.2
3,391,966	+				-0.8
3,391,966	+				-2.2
3,391,966	+				-0.1
3,391,967	-				-0.5
3,391,967	-				-0.3
3,391,987	+				-0.2
3,391,987	+				+0.3
3,391,988	-				-1.5
3,392,007	+				-0.3
3,392,008	-				-0.8
3,392,037	+				+0.4
3,392,038	-				+0.5
3,392,038	-				-2.4
3,392,038	-				+0.9
3,392,038	-				-1.4
3,392,038	-				-0.7
3,392,038	-				+0.5
3,392,047	+				-0.3
3,392,047	+				-1.9
3,392,048	-				-0.2
3,392,048	-				-1.1
3,392,088	+				-0.4
3,392,088	+				-1.4
3,392,089	-				-1.0
3,392,089	-				-0.5
3,392,089	-				-0.2
3,392,121	+				-0.3
3,392,122	-				-0.4