Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS14585 and LRK54_RS14590 are separated by 30 nucleotides LRK54_RS14590 and LRK54_RS14595 are separated by 90 nucleotides LRK54_RS14595 and LRK54_RS14600 overlap by 4 nucleotides
LRK54_RS14585: LRK54_RS14585 - AraC family transcriptional regulator, at 3,235,309 to 3,236,145
_RS14585
LRK54_RS14590: LRK54_RS14590 - N-acetylmuramoyl-L-alanine amidase, at 3,236,176 to 3,236,730
_RS14590
LRK54_RS14595: LRK54_RS14595 - alpha/beta hydrolase, at 3,236,821 to 3,237,348
_RS14595
LRK54_RS14600: LRK54_RS14600 - bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL, at 3,237,345 to 3,239,531
_RS14600
Position (kb) 3236
3237
3238 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3235.928 kb on + strand, within LRK54_RS14585 at 3235.928 kb on + strand, within LRK54_RS14585 at 3235.929 kb on - strand, within LRK54_RS14585 at 3235.929 kb on - strand, within LRK54_RS14585 at 3236.177 kb on + strand at 3236.177 kb on + strand at 3236.177 kb on + strand at 3236.178 kb on - strand at 3236.178 kb on - strand at 3236.178 kb on - strand at 3236.394 kb on - strand, within LRK54_RS14590 at 3236.522 kb on + strand, within LRK54_RS14590 at 3236.522 kb on + strand, within LRK54_RS14590 at 3236.522 kb on + strand, within LRK54_RS14590 at 3236.522 kb on + strand, within LRK54_RS14590 at 3236.522 kb on + strand, within LRK54_RS14590 at 3236.523 kb on - strand, within LRK54_RS14590 at 3236.523 kb on - strand, within LRK54_RS14590 at 3236.523 kb on - strand, within LRK54_RS14590 at 3236.523 kb on - strand, within LRK54_RS14590 at 3236.528 kb on + strand, within LRK54_RS14590 at 3236.528 kb on + strand, within LRK54_RS14590 at 3236.528 kb on + strand, within LRK54_RS14590 at 3236.528 kb on + strand, within LRK54_RS14590 at 3236.528 kb on + strand, within LRK54_RS14590 at 3236.528 kb on + strand, within LRK54_RS14590 at 3236.528 kb on + strand, within LRK54_RS14590 at 3236.529 kb on - strand, within LRK54_RS14590 at 3236.529 kb on - strand, within LRK54_RS14590 at 3236.529 kb on - strand, within LRK54_RS14590 at 3236.529 kb on - strand, within LRK54_RS14590 at 3236.529 kb on - strand, within LRK54_RS14590 at 3236.529 kb on - strand, within LRK54_RS14590 at 3236.529 kb on - strand, within LRK54_RS14590 at 3236.529 kb on - strand, within LRK54_RS14590 at 3236.552 kb on + strand, within LRK54_RS14590 at 3236.552 kb on + strand, within LRK54_RS14590 at 3236.552 kb on + strand, within LRK54_RS14590 at 3236.552 kb on + strand, within LRK54_RS14590 at 3236.552 kb on + strand, within LRK54_RS14590 at 3236.552 kb on + strand, within LRK54_RS14590 at 3236.552 kb on + strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.553 kb on - strand, within LRK54_RS14590 at 3236.555 kb on + strand, within LRK54_RS14590 at 3236.555 kb on + strand, within LRK54_RS14590 at 3236.555 kb on + strand, within LRK54_RS14590 at 3236.555 kb on + strand, within LRK54_RS14590 at 3236.555 kb on + strand, within LRK54_RS14590 at 3236.555 kb on + strand, within LRK54_RS14590 at 3236.556 kb on - strand, within LRK54_RS14590 at 3236.556 kb on - strand, within LRK54_RS14590 at 3236.556 kb on - strand, within LRK54_RS14590 at 3236.556 kb on - strand, within LRK54_RS14590 at 3236.556 kb on - strand, within LRK54_RS14590 at 3236.556 kb on - strand, within LRK54_RS14590 at 3236.556 kb on - strand, within LRK54_RS14590 at 3236.556 kb on - strand, within LRK54_RS14590 at 3236.603 kb on + strand, within LRK54_RS14590 at 3236.696 kb on + strand at 3236.696 kb on + strand at 3236.696 kb on + strand at 3236.696 kb on + strand at 3236.696 kb on + strand at 3236.696 kb on + strand at 3236.696 kb on + strand at 3236.696 kb on + strand at 3236.696 kb on + strand at 3236.696 kb on + strand at 3236.697 kb on - strand at 3236.697 kb on - strand at 3236.697 kb on - strand at 3236.697 kb on - strand at 3236.697 kb on - strand at 3236.697 kb on - strand at 3236.697 kb on - strand at 3236.697 kb on - strand at 3236.697 kb on - strand at 3236.697 kb on - strand at 3236.697 kb on - strand at 3236.778 kb on + strand at 3236.778 kb on + strand at 3236.778 kb on + strand at 3236.778 kb on + strand at 3236.778 kb on + strand at 3236.779 kb on - strand at 3236.919 kb on + strand, within LRK54_RS14595 at 3236.919 kb on + strand, within LRK54_RS14595 at 3236.919 kb on + strand, within LRK54_RS14595 at 3236.919 kb on + strand, within LRK54_RS14595 at 3236.919 kb on + strand, within LRK54_RS14595 at 3236.919 kb on + strand, within LRK54_RS14595 at 3236.920 kb on - strand, within LRK54_RS14595 at 3236.920 kb on - strand, within LRK54_RS14595 at 3236.920 kb on - strand, within LRK54_RS14595 at 3236.920 kb on - strand, within LRK54_RS14595 at 3237.133 kb on + strand, within LRK54_RS14595 at 3237.134 kb on - strand, within LRK54_RS14595 at 3237.134 kb on - strand, within LRK54_RS14595 at 3237.354 kb on + strand at 3237.354 kb on + strand at 3237.354 kb on + strand at 3237.354 kb on + strand at 3237.355 kb on - strand at 3237.355 kb on - strand at 3237.355 kb on - strand at 3237.355 kb on - strand at 3237.362 kb on + strand at 3237.384 kb on + strand at 3237.384 kb on + strand at 3237.384 kb on + strand at 3237.384 kb on + strand at 3237.384 kb on + strand at 3237.384 kb on + strand at 3237.385 kb on - strand at 3237.385 kb on - strand at 3237.385 kb on - strand at 3237.385 kb on - strand at 3237.385 kb on - strand at 3237.385 kb on - strand at 3237.385 kb on - strand at 3237.477 kb on + strand at 3237.477 kb on + strand at 3237.477 kb on + strand at 3237.477 kb on + strand at 3237.477 kb on + strand at 3237.477 kb on + strand at 3237.477 kb on + strand at 3237.477 kb on + strand at 3237.478 kb on - strand at 3237.478 kb on - strand at 3237.478 kb on - strand at 3237.478 kb on - strand at 3237.478 kb on - strand at 3237.478 kb on - strand at 3237.561 kb on + strand at 3237.561 kb on + strand at 3237.561 kb on + strand at 3237.561 kb on + strand at 3237.561 kb on + strand at 3237.561 kb on + strand at 3237.562 kb on - strand at 3237.562 kb on - strand at 3237.562 kb on - strand at 3237.562 kb on - strand at 3237.562 kb on - strand at 3237.562 kb on - strand at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.913 kb on + strand, within LRK54_RS14600 at 3237.914 kb on - strand, within LRK54_RS14600 at 3237.914 kb on - strand, within LRK54_RS14600 at 3237.914 kb on - strand, within LRK54_RS14600 at 3237.914 kb on - strand, within LRK54_RS14600 at 3237.914 kb on - strand, within LRK54_RS14600 at 3237.914 kb on - strand, within LRK54_RS14600 at 3237.914 kb on - strand, within LRK54_RS14600 at 3237.914 kb on - strand, within LRK54_RS14600 at 3237.914 kb on - strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.915 kb on + strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3237.916 kb on - strand, within LRK54_RS14600 at 3238.020 kb on + strand, within LRK54_RS14600 at 3238.020 kb on + strand, within LRK54_RS14600 at 3238.020 kb on + strand, within LRK54_RS14600 at 3238.021 kb on - strand, within LRK54_RS14600 at 3238.021 kb on - strand, within LRK54_RS14600 at 3238.329 kb on + strand, within LRK54_RS14600 at 3238.330 kb on - strand, within LRK54_RS14600
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 3,235,928 + LRK54_RS14585 0.74 -0.5 3,235,928 + LRK54_RS14585 0.74 +1.1 3,235,929 - LRK54_RS14585 0.74 +0.3 3,235,929 - LRK54_RS14585 0.74 +1.3 3,236,177 + +0.1 3,236,177 + +0.4 3,236,177 + -1.6 3,236,178 - +1.7 3,236,178 - -0.1 3,236,178 - +0.1 3,236,394 - LRK54_RS14590 0.39 -0.0 3,236,522 + LRK54_RS14590 0.62 -1.8 3,236,522 + LRK54_RS14590 0.62 -1.0 3,236,522 + LRK54_RS14590 0.62 -0.8 3,236,522 + LRK54_RS14590 0.62 -0.5 3,236,522 + LRK54_RS14590 0.62 -0.4 3,236,523 - LRK54_RS14590 0.63 -2.2 3,236,523 - LRK54_RS14590 0.63 -2.2 3,236,523 - LRK54_RS14590 0.63 -3.6 3,236,523 - LRK54_RS14590 0.63 -1.0 3,236,528 + LRK54_RS14590 0.63 -1.7 3,236,528 + LRK54_RS14590 0.63 -2.4 3,236,528 + LRK54_RS14590 0.63 -0.9 3,236,528 + LRK54_RS14590 0.63 -1.1 3,236,528 + LRK54_RS14590 0.63 -1.6 3,236,528 + LRK54_RS14590 0.63 -0.1 3,236,528 + LRK54_RS14590 0.63 -1.1 3,236,529 - LRK54_RS14590 0.64 -1.6 3,236,529 - LRK54_RS14590 0.64 -1.9 3,236,529 - LRK54_RS14590 0.64 -2.6 3,236,529 - LRK54_RS14590 0.64 -0.4 3,236,529 - LRK54_RS14590 0.64 +1.1 3,236,529 - LRK54_RS14590 0.64 +0.7 3,236,529 - LRK54_RS14590 0.64 -1.2 3,236,529 - LRK54_RS14590 0.64 -1.6 3,236,552 + LRK54_RS14590 0.68 -1.3 3,236,552 + LRK54_RS14590 0.68 +0.1 3,236,552 + LRK54_RS14590 0.68 -3.4 3,236,552 + LRK54_RS14590 0.68 -0.3 3,236,552 + LRK54_RS14590 0.68 -1.2 3,236,552 + LRK54_RS14590 0.68 -1.8 3,236,552 + LRK54_RS14590 0.68 -0.6 3,236,553 - LRK54_RS14590 0.68 -1.5 3,236,553 - LRK54_RS14590 0.68 -0.4 3,236,553 - LRK54_RS14590 0.68 -1.4 3,236,553 - LRK54_RS14590 0.68 -1.3 3,236,553 - LRK54_RS14590 0.68 -0.6 3,236,553 - LRK54_RS14590 0.68 -3.2 3,236,553 - LRK54_RS14590 0.68 -0.8 3,236,553 - LRK54_RS14590 0.68 -1.3 3,236,553 - LRK54_RS14590 0.68 -2.1 3,236,553 - LRK54_RS14590 0.68 -2.2 3,236,553 - LRK54_RS14590 0.68 -1.2 3,236,553 - LRK54_RS14590 0.68 -3.8 3,236,553 - LRK54_RS14590 0.68 -2.5 3,236,555 + LRK54_RS14590 0.68 -1.2 3,236,555 + LRK54_RS14590 0.68 -1.0 3,236,555 + LRK54_RS14590 0.68 -1.3 3,236,555 + LRK54_RS14590 0.68 -1.0 3,236,555 + LRK54_RS14590 0.68 +0.1 3,236,555 + LRK54_RS14590 0.68 -2.5 3,236,556 - LRK54_RS14590 0.68 -0.0 3,236,556 - LRK54_RS14590 0.68 -2.4 3,236,556 - LRK54_RS14590 0.68 -1.5 3,236,556 - LRK54_RS14590 0.68 -1.6 3,236,556 - LRK54_RS14590 0.68 -1.3 3,236,556 - LRK54_RS14590 0.68 -1.5 3,236,556 - LRK54_RS14590 0.68 -1.4 3,236,556 - LRK54_RS14590 0.68 -0.8 3,236,603 + LRK54_RS14590 0.77 -0.6 3,236,696 + -1.1 3,236,696 + -1.2 3,236,696 + -2.3 3,236,696 + -0.3 3,236,696 + +0.1 3,236,696 + -1.1 3,236,696 + -1.8 3,236,696 + +1.1 3,236,696 + -0.8 3,236,696 + -0.3 3,236,697 - -1.6 3,236,697 - -3.9 3,236,697 - -2.3 3,236,697 - +0.1 3,236,697 - -2.3 3,236,697 - +0.7 3,236,697 - -1.4 3,236,697 - -0.9 3,236,697 - -1.7 3,236,697 - -0.4 3,236,697 - +0.1 3,236,778 + +0.3 3,236,778 + -1.2 3,236,778 + +0.1 3,236,778 + +0.8 3,236,778 + +0.9 3,236,779 - +0.1 3,236,919 + LRK54_RS14595 0.19 +0.8 3,236,919 + LRK54_RS14595 0.19 +0.4 3,236,919 + LRK54_RS14595 0.19 +0.3 3,236,919 + LRK54_RS14595 0.19 +0.2 3,236,919 + LRK54_RS14595 0.19 +0.5 3,236,919 + LRK54_RS14595 0.19 +0.0 3,236,920 - LRK54_RS14595 0.19 +0.5 3,236,920 - LRK54_RS14595 0.19 +1.1 3,236,920 - LRK54_RS14595 0.19 -1.3 3,236,920 - LRK54_RS14595 0.19 -0.5 3,237,133 + LRK54_RS14595 0.59 -0.1 3,237,134 - LRK54_RS14595 0.59 +0.3 3,237,134 - LRK54_RS14595 0.59 +0.2 3,237,354 + +0.2 3,237,354 + +0.2 3,237,354 + +0.5 3,237,354 + +1.5 3,237,355 - -0.0 3,237,355 - +0.1 3,237,355 - +0.2 3,237,355 - -0.9 3,237,362 + -0.1 3,237,384 + +0.8 3,237,384 + +3.1 3,237,384 + -0.3 3,237,384 + +0.6 3,237,384 + -0.4 3,237,384 + +0.2 3,237,385 - -0.4 3,237,385 - +0.9 3,237,385 - +0.2 3,237,385 - +0.7 3,237,385 - +0.0 3,237,385 - -0.3 3,237,385 - +0.7 3,237,477 + +0.1 3,237,477 + +0.2 3,237,477 + +1.3 3,237,477 + -1.3 3,237,477 + +0.1 3,237,477 + +0.1 3,237,477 + -0.3 3,237,477 + -1.1 3,237,478 - -0.7 3,237,478 - +0.1 3,237,478 - -1.0 3,237,478 - -0.6 3,237,478 - -0.1 3,237,478 - +0.2 3,237,561 + -0.7 3,237,561 + -0.3 3,237,561 + -0.3 3,237,561 + -0.2 3,237,561 + -0.3 3,237,561 + -0.4 3,237,562 - +1.3 3,237,562 - -0.4 3,237,562 - +0.8 3,237,562 - +1.7 3,237,562 - -0.5 3,237,562 - -0.3 3,237,913 + LRK54_RS14600 0.26 +0.5 3,237,913 + LRK54_RS14600 0.26 -0.9 3,237,913 + LRK54_RS14600 0.26 +1.2 3,237,913 + LRK54_RS14600 0.26 -0.3 3,237,913 + LRK54_RS14600 0.26 -0.0 3,237,913 + LRK54_RS14600 0.26 +0.3 3,237,913 + LRK54_RS14600 0.26 -0.1 3,237,913 + LRK54_RS14600 0.26 -0.1 3,237,913 + LRK54_RS14600 0.26 -0.2 3,237,913 + LRK54_RS14600 0.26 +0.1 3,237,913 + LRK54_RS14600 0.26 +0.1 3,237,913 + LRK54_RS14600 0.26 +0.1 3,237,913 + LRK54_RS14600 0.26 +0.1 3,237,913 + LRK54_RS14600 0.26 -0.4 3,237,913 + LRK54_RS14600 0.26 -0.2 3,237,913 + LRK54_RS14600 0.26 +0.0 3,237,913 + LRK54_RS14600 0.26 -0.5 3,237,913 + LRK54_RS14600 0.26 -0.4 3,237,913 + LRK54_RS14600 0.26 -0.3 3,237,914 - LRK54_RS14600 0.26 -0.2 3,237,914 - LRK54_RS14600 0.26 +0.4 3,237,914 - LRK54_RS14600 0.26 -0.4 3,237,914 - LRK54_RS14600 0.26 +1.5 3,237,914 - LRK54_RS14600 0.26 +0.1 3,237,914 - LRK54_RS14600 0.26 +0.3 3,237,914 - LRK54_RS14600 0.26 +0.5 3,237,914 - LRK54_RS14600 0.26 -0.2 3,237,914 - LRK54_RS14600 0.26 +0.5 3,237,915 + LRK54_RS14600 0.26 +0.4 3,237,915 + LRK54_RS14600 0.26 -0.1 3,237,915 + LRK54_RS14600 0.26 +0.1 3,237,915 + LRK54_RS14600 0.26 -0.5 3,237,915 + LRK54_RS14600 0.26 -1.2 3,237,915 + LRK54_RS14600 0.26 +0.1 3,237,915 + LRK54_RS14600 0.26 -0.1 3,237,915 + LRK54_RS14600 0.26 -0.7 3,237,915 + LRK54_RS14600 0.26 -0.8 3,237,915 + LRK54_RS14600 0.26 +0.5 3,237,915 + LRK54_RS14600 0.26 -2.0 3,237,916 - LRK54_RS14600 0.26 -0.2 3,237,916 - LRK54_RS14600 0.26 +1.8 3,237,916 - LRK54_RS14600 0.26 -0.0 3,237,916 - LRK54_RS14600 0.26 +0.1 3,237,916 - LRK54_RS14600 0.26 -0.1 3,237,916 - LRK54_RS14600 0.26 -0.5 3,237,916 - LRK54_RS14600 0.26 +0.3 3,237,916 - LRK54_RS14600 0.26 +0.2 3,237,916 - LRK54_RS14600 0.26 -0.7 3,237,916 - LRK54_RS14600 0.26 +0.0 3,237,916 - LRK54_RS14600 0.26 +0.6 3,237,916 - LRK54_RS14600 0.26 -0.0 3,237,916 - LRK54_RS14600 0.26 +0.1 3,237,916 - LRK54_RS14600 0.26 +0.6 3,237,916 - LRK54_RS14600 0.26 -0.5 3,237,916 - LRK54_RS14600 0.26 -0.3 3,238,020 + LRK54_RS14600 0.31 -0.1 3,238,020 + LRK54_RS14600 0.31 -0.3 3,238,020 + LRK54_RS14600 0.31 +0.0 3,238,021 - LRK54_RS14600 0.31 +0.8 3,238,021 - LRK54_RS14600 0.31 +0.4 3,238,329 + LRK54_RS14600 0.45 +0.7 3,238,330 - LRK54_RS14600 0.45 -0.2
Or see this region's nucleotide sequence