Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13080

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,925,483	+		LRK54_RS13075	0.44	-0.4
2,925,483	+		LRK54_RS13075	0.44	+0.3
2,925,483	+		LRK54_RS13075	0.44	+0.4
2,925,483	+		LRK54_RS13075	0.44	+0.1
2,925,483	+		LRK54_RS13075	0.44	+0.0
2,925,483	+		LRK54_RS13075	0.44	+0.4
2,925,483	+		LRK54_RS13075	0.44	-0.6
2,925,483	+		LRK54_RS13075	0.44	+0.1
2,925,484	-		LRK54_RS13075	0.44	-0.2
2,925,484	-		LRK54_RS13075	0.44	+0.6
2,925,484	-		LRK54_RS13075	0.44	-0.1
2,925,484	-		LRK54_RS13075	0.44	-0.1
2,925,484	-		LRK54_RS13075	0.44	+0.5
2,925,484	-		LRK54_RS13075	0.44	+0.6
2,925,561	+		LRK54_RS13075	0.49	+0.4
2,925,561	+		LRK54_RS13075	0.49	+1.2
2,925,561	+		LRK54_RS13075	0.49	+0.8
2,925,562	-		LRK54_RS13075	0.49	+1.3
2,925,562	-		LRK54_RS13075	0.49	+0.1
2,925,562	-		LRK54_RS13075	0.49	+1.5
2,925,562	-		LRK54_RS13075	0.49	+0.2
2,925,562	-		LRK54_RS13075	0.49	-0.4
2,925,562	-		LRK54_RS13075	0.49	+0.2
2,925,640	-		LRK54_RS13075	0.54	+0.9
2,925,831	+		LRK54_RS13075	0.67	-1.0
2,925,831	+		LRK54_RS13075	0.67	-0.2
2,925,831	+		LRK54_RS13075	0.67	-0.6
2,925,831	+		LRK54_RS13075	0.67	-0.6
2,925,831	+		LRK54_RS13075	0.67	+0.9
2,925,831	+		LRK54_RS13075	0.67	-0.8
2,925,831	+		LRK54_RS13075	0.67	-0.2
2,925,831	+		LRK54_RS13075	0.67	+0.1
2,925,832	-		LRK54_RS13075	0.67	-0.4
2,925,832	-		LRK54_RS13075	0.67	+0.2
2,925,832	-		LRK54_RS13075	0.67	-1.2
2,925,832	-		LRK54_RS13075	0.67	-0.4
2,925,841	-		LRK54_RS13075	0.67	-0.8
2,925,861	+		LRK54_RS13075	0.68	-0.3
2,925,861	+		LRK54_RS13075	0.68	-1.3
2,925,861	+		LRK54_RS13075	0.68	+0.0
2,925,862	-		LRK54_RS13075	0.69	-0.3
2,925,862	-		LRK54_RS13075	0.69	+0.7
2,925,862	-		LRK54_RS13075	0.69	+0.3
2,925,862	-		LRK54_RS13075	0.69	+0.4
2,925,862	-		LRK54_RS13075	0.69	+0.0
2,925,862	-		LRK54_RS13075	0.69	-0.2
2,925,867	+		LRK54_RS13075	0.69	-0.2
2,925,951	+		LRK54_RS13075	0.74	-0.2
2,925,952	-		LRK54_RS13075	0.74	-0.8
2,925,952	-		LRK54_RS13075	0.74	-0.6
2,926,011	+		LRK54_RS13075	0.78	+0.0
2,926,011	+		LRK54_RS13075	0.78	-0.6
2,926,012	-		LRK54_RS13075	0.78	+2.0
2,926,012	-		LRK54_RS13075	0.78	-0.4
2,926,012	-		LRK54_RS13075	0.78	-0.3
2,926,012	-		LRK54_RS13075	0.78	-0.1
2,926,012	-		LRK54_RS13075	0.78	+0.4
2,926,012	-		LRK54_RS13075	0.78	+0.1
2,926,012	-		LRK54_RS13075	0.78	-0.3
2,926,068	+		LRK54_RS13075	0.82	-0.2
2,926,068	+		LRK54_RS13075	0.82	-0.3
2,926,068	+		LRK54_RS13075	0.82	+0.2
2,926,068	+		LRK54_RS13075	0.82	+0.0
2,926,069	-		LRK54_RS13075	0.82	-0.2
2,926,069	-		LRK54_RS13075	0.82	+0.7
2,926,116	+		LRK54_RS13075	0.85	+0.1
2,926,116	+		LRK54_RS13075	0.85	-0.9
2,926,116	+		LRK54_RS13075	0.85	+0.0
2,926,116	+		LRK54_RS13075	0.85	-1.9
2,926,116	+		LRK54_RS13075	0.85	+0.0
2,926,116	+		LRK54_RS13075	0.85	-0.6
2,926,117	-		LRK54_RS13075	0.85	-1.8
2,926,117	-		LRK54_RS13075	0.85	+0.6
2,926,117	-		LRK54_RS13075	0.85	+0.4
2,926,117	-		LRK54_RS13075	0.85	-0.1
2,926,117	-		LRK54_RS13075	0.85	-0.7
2,926,117	-		LRK54_RS13075	0.85	-2.2
2,926,117	-		LRK54_RS13075	0.85	-1.5
2,926,117	-		LRK54_RS13075	0.85	-0.6
2,926,117	-		LRK54_RS13075	0.85	-0.4
2,926,117	-		LRK54_RS13075	0.85	-0.4
2,926,117	-		LRK54_RS13075	0.85	+1.1
2,926,449	+				-0.2
2,926,449	+				+1.8
2,926,449	+				+0.4
2,926,449	+				+0.2
2,926,449	+				+0.7
2,926,449	+				+0.3
2,926,449	+				-0.1
2,926,449	+				-0.1
2,926,449	+				-0.1
2,926,449	+				+1.3
2,926,450	-				-0.2
2,926,450	-				+0.9
2,926,450	-				+0.2
2,926,450	-				+0.1
2,926,450	-				-0.5
2,926,450	-				-0.1
2,926,450	-				+1.6
2,926,450	-				+0.1
2,926,450	-				-0.9
2,926,450	-				+0.2
2,926,465	+				+0.7
2,926,466	-				+0.6
2,926,477	+				+0.3
2,926,478	-				+0.0
2,926,478	-				+0.6
2,926,495	+				-0.3
2,926,495	+				-2.4
2,926,495	+				-0.7
2,926,496	-				+1.1
2,926,496	-				+0.3
2,926,496	-				+1.5
2,926,496	-				+0.3
2,926,496	-				+1.4
2,926,496	-				+0.2
2,926,496	-				-0.1
2,926,630	+				+0.2
2,926,630	+				-0.3
2,926,630	+				-1.3
2,926,630	+				+1.1
2,926,630	+				+0.4
2,926,630	+				+1.2
2,926,630	+				+0.6
2,926,630	+				+0.4
2,926,630	+				-0.7
2,926,630	+				+0.4
2,926,630	+				+0.3
2,926,631	-				+0.2
2,926,631	-				+0.1
2,926,631	-				+0.4
2,926,631	-				+0.4
2,926,631	-				+0.5
2,926,631	-				-0.8
2,926,631	-				-0.3
2,926,631	-				-0.3
2,926,648	+				-0.1
2,926,648	+				+0.2
2,926,648	+				-0.2
2,926,649	-				-0.0
2,926,649	-				+0.7
2,926,649	-				-0.1
2,926,649	-				-0.9
2,926,649	-				+0.5
2,926,726	+				+0.8
2,926,726	+				+0.3
2,926,726	+				-0.3
2,926,726	+				+0.6
2,926,726	+				+0.4
2,926,726	+				+0.9
2,926,726	+				+0.6
2,926,726	+				+0.3
2,926,726	+				-0.7
2,926,726	+				+0.4
2,926,727	-				+0.7
2,926,727	-				+1.7
2,926,727	-				+0.2
2,926,727	-				+0.5
2,926,727	-				+2.2
2,926,727	-				+0.5
2,926,727	-				+0.2
2,926,740	-				-1.7
2,926,766	-		LRK54_RS13080	0.10	-0.0
2,926,766	-		LRK54_RS13080	0.10	+1.4
2,926,768	+		LRK54_RS13080	0.10	+0.5
2,926,768	+		LRK54_RS13080	0.10	-0.7
2,926,768	+		LRK54_RS13080	0.10	-0.1
2,926,768	+		LRK54_RS13080	0.10	+0.3
2,926,768	+		LRK54_RS13080	0.10	+0.9
2,926,768	+		LRK54_RS13080	0.10	+0.8
2,926,769	-		LRK54_RS13080	0.10	+1.0
2,926,769	-		LRK54_RS13080	0.10	+0.6
2,926,769	-		LRK54_RS13080	0.10	-1.5
2,926,769	-		LRK54_RS13080	0.10	-0.4
2,926,769	-		LRK54_RS13080	0.10	+1.4
2,926,769	-		LRK54_RS13080	0.10	+0.7
2,926,769	-		LRK54_RS13080	0.10	+0.6
2,926,834	+		LRK54_RS13080	0.13	+0.2
2,926,835	-		LRK54_RS13080	0.13	+0.2
2,926,945	+		LRK54_RS13080	0.17	+0.4
2,926,945	+		LRK54_RS13080	0.17	+0.3
2,927,050	+		LRK54_RS13080	0.20	+0.6
2,927,050	+		LRK54_RS13080	0.20	-0.0
2,927,050	+		LRK54_RS13080	0.20	+0.9
2,927,051	-		LRK54_RS13080	0.20	+1.5
2,927,051	-		LRK54_RS13080	0.20	+1.3
2,927,077	+		LRK54_RS13080	0.21	-0.1
2,927,077	+		LRK54_RS13080	0.21	+0.3
2,927,077	+		LRK54_RS13080	0.21	-0.0
2,927,077	+		LRK54_RS13080	0.21	+1.4
2,927,077	+		LRK54_RS13080	0.21	-0.0
2,927,077	+		LRK54_RS13080	0.21	+1.3
2,927,077	+		LRK54_RS13080	0.21	+0.3
2,927,077	+		LRK54_RS13080	0.21	-0.2
2,927,077	+		LRK54_RS13080	0.21	+0.0
2,927,078	-		LRK54_RS13080	0.21	+0.9
2,927,078	-		LRK54_RS13080	0.21	+0.8
2,927,078	-		LRK54_RS13080	0.21	+0.8
2,927,078	-		LRK54_RS13080	0.21	-0.3
2,927,078	-		LRK54_RS13080	0.21	+0.9
2,927,078	-		LRK54_RS13080	0.21	+0.6
2,927,078	-		LRK54_RS13080	0.21	+0.4
2,927,098	+		LRK54_RS13080	0.22	-0.4
2,927,098	+		LRK54_RS13080	0.22	+0.2
2,927,099	-		LRK54_RS13080	0.22	+0.0
2,927,099	-		LRK54_RS13080	0.22	+0.1
2,927,099	-		LRK54_RS13080	0.22	-1.1
2,927,116	+		LRK54_RS13080	0.22	+0.3
2,927,116	+		LRK54_RS13080	0.22	+0.5
2,927,116	+		LRK54_RS13080	0.22	-0.5
2,927,116	+		LRK54_RS13080	0.22	+1.5
2,927,116	+		LRK54_RS13080	0.22	+0.4
2,927,116	+		LRK54_RS13080	0.22	-0.2
2,927,116	+		LRK54_RS13080	0.22	+0.2
2,927,117	-		LRK54_RS13080	0.22	-0.9
2,927,117	-		LRK54_RS13080	0.22	-1.6
2,927,117	-		LRK54_RS13080	0.22	+1.8
2,927,176	+		LRK54_RS13080	0.24	-0.7
2,927,176	+		LRK54_RS13080	0.24	-1.6
2,927,176	+		LRK54_RS13080	0.24	+0.0
2,927,176	+		LRK54_RS13080	0.24	+0.3
2,927,176	+		LRK54_RS13080	0.24	+0.0
2,927,176	+		LRK54_RS13080	0.24	+0.8
2,927,176	+		LRK54_RS13080	0.24	-0.2
2,927,176	+		LRK54_RS13080	0.24	+1.2
2,927,176	+		LRK54_RS13080	0.24	-2.1
2,927,176	+		LRK54_RS13080	0.24	+0.4
2,927,177	-		LRK54_RS13080	0.24	+0.1
2,927,197	+		LRK54_RS13080	0.25	+0.1
2,927,197	+		LRK54_RS13080	0.25	+0.8
2,927,197	+		LRK54_RS13080	0.25	+0.4
2,927,197	+		LRK54_RS13080	0.25	-0.7
2,927,197	+		LRK54_RS13080	0.25	-1.0
2,927,197	+		LRK54_RS13080	0.25	+0.0
2,927,198	-		LRK54_RS13080	0.25	+0.4
2,927,198	-		LRK54_RS13080	0.25	+0.4
2,927,198	-		LRK54_RS13080	0.25	+1.5
2,927,198	-		LRK54_RS13080	0.25	+0.6
2,927,206	+		LRK54_RS13080	0.25	+0.5
2,927,206	+		LRK54_RS13080	0.25	+0.4
2,927,206	+		LRK54_RS13080	0.25	+0.6
2,927,206	+		LRK54_RS13080	0.25	-0.8
2,927,207	-		LRK54_RS13080	0.26	-0.2
2,927,207	-		LRK54_RS13080	0.26	+0.8
2,927,272	+		LRK54_RS13080	0.28	-0.8
2,927,272	+		LRK54_RS13080	0.28	+0.0
2,927,272	+		LRK54_RS13080	0.28	-0.4
2,927,272	+		LRK54_RS13080	0.28	+0.4
2,927,272	+		LRK54_RS13080	0.28	+0.4
2,927,272	+		LRK54_RS13080	0.28	+1.2
2,927,273	-		LRK54_RS13080	0.28	+1.4
2,927,273	-		LRK54_RS13080	0.28	+0.3
2,927,273	-		LRK54_RS13080	0.28	+1.4
2,927,273	-		LRK54_RS13080	0.28	-2.1
2,927,273	-		LRK54_RS13080	0.28	+0.4
2,927,273	-		LRK54_RS13080	0.28	+1.4
2,927,434	+		LRK54_RS13080	0.33	+1.7
2,927,435	-		LRK54_RS13080	0.33	+1.0
2,927,435	-		LRK54_RS13080	0.33	+1.0
2,927,443	+		LRK54_RS13080	0.34	+0.5
2,927,443	+		LRK54_RS13080	0.34	-0.1
2,927,443	+		LRK54_RS13080	0.34	+1.5
2,927,444	-		LRK54_RS13080	0.34	+0.2
2,927,444	-		LRK54_RS13080	0.34	+0.3
2,927,444	-		LRK54_RS13080	0.34	-0.1
2,927,444	-		LRK54_RS13080	0.34	-0.1
2,927,611	+		LRK54_RS13080	0.39	-1.0
2,927,611	+		LRK54_RS13080	0.39	+0.6
2,927,611	+		LRK54_RS13080	0.39	-0.1
2,927,612	-		LRK54_RS13080	0.39	-0.3
2,927,612	-		LRK54_RS13080	0.39	-0.1
2,927,612	-		LRK54_RS13080	0.39	+0.4
2,927,612	-		LRK54_RS13080	0.39	+0.2
2,927,722	+		LRK54_RS13080	0.43	-0.5
2,927,722	+		LRK54_RS13080	0.43	-0.5
2,927,722	+		LRK54_RS13080	0.43	+0.6
2,927,722	+		LRK54_RS13080	0.43	+0.8
2,927,722	+		LRK54_RS13080	0.43	-0.5
2,927,722	+		LRK54_RS13080	0.43	+1.6
2,927,722	+		LRK54_RS13080	0.43	+0.7
2,927,722	+		LRK54_RS13080	0.43	+0.4
2,927,723	-		LRK54_RS13080	0.43	-0.2
2,927,723	-		LRK54_RS13080	0.43	+0.5
2,927,723	-		LRK54_RS13080	0.43	+0.8
2,927,723	-		LRK54_RS13080	0.43	+1.4
2,927,857	+		LRK54_RS13080	0.48	-0.3
2,927,857	+		LRK54_RS13080	0.48	+1.4
2,927,857	+		LRK54_RS13080	0.48	-0.9
2,927,857	+		LRK54_RS13080	0.48	+0.9
2,927,858	-		LRK54_RS13080	0.48	-0.6
2,927,858	-		LRK54_RS13080	0.48	+0.3
2,927,858	-		LRK54_RS13080	0.48	+0.8
2,927,858	-		LRK54_RS13080	0.48	+0.1
2,928,052	+		LRK54_RS13080	0.55	+1.1
2,928,052	+		LRK54_RS13080	0.55	+1.5
2,928,052	+		LRK54_RS13080	0.55	+0.7
2,928,052	+		LRK54_RS13080	0.55	+0.8
2,928,052	+		LRK54_RS13080	0.55	+0.7
2,928,052	+		LRK54_RS13080	0.55	+0.8
2,928,052	+		LRK54_RS13080	0.55	+0.2
2,928,053	-		LRK54_RS13080	0.55	+0.9
2,928,053	-		LRK54_RS13080	0.55	+0.6
2,928,053	-		LRK54_RS13080	0.55	+1.3
2,928,053	-		LRK54_RS13080	0.55	+1.4
2,928,053	-		LRK54_RS13080	0.55	+0.0
2,928,134	-		LRK54_RS13080	0.57	-0.8
2,928,149	-		LRK54_RS13080	0.58	+0.9
2,928,149	-		LRK54_RS13080	0.58	+0.0
2,928,188	-		LRK54_RS13080	0.59	-0.7
2,928,188	-		LRK54_RS13080	0.59	-0.4
2,928,188	-		LRK54_RS13080	0.59	+1.2
2,928,188	-		LRK54_RS13080	0.59	+0.2
2,928,188	-		LRK54_RS13080	0.59	+0.8
2,928,277	+		LRK54_RS13080	0.62	+0.6
2,928,277	+		LRK54_RS13080	0.62	+0.8
2,928,277	+		LRK54_RS13080	0.62	+1.3
2,928,277	+		LRK54_RS13080	0.62	+0.2
2,928,277	+		LRK54_RS13080	0.62	+0.1
2,928,278	-		LRK54_RS13080	0.62	+2.1
2,928,278	-		LRK54_RS13080	0.62	+0.4
2,928,278	-		LRK54_RS13080	0.62	+0.6
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