Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13010

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,904,730	+		LRK54_RS13005	0.42	+0.5
2,904,730	+		LRK54_RS13005	0.42	+0.4
2,904,731	-		LRK54_RS13005	0.42	-0.6
2,904,731	-		LRK54_RS13005	0.42	+0.0
2,904,731	-		LRK54_RS13005	0.42	+0.3
2,905,006	+		LRK54_RS13005	0.61	+0.4
2,905,006	+		LRK54_RS13005	0.61	+1.0
2,905,006	+		LRK54_RS13005	0.61	+0.1
2,905,006	+		LRK54_RS13005	0.61	+1.1
2,905,006	+		LRK54_RS13005	0.61	+1.6
2,905,006	+		LRK54_RS13005	0.61	+0.9
2,905,006	+		LRK54_RS13005	0.61	+0.6
2,905,006	+		LRK54_RS13005	0.61	+0.4
2,905,006	+		LRK54_RS13005	0.61	+0.7
2,905,006	+		LRK54_RS13005	0.61	+0.6
2,905,006	+		LRK54_RS13005	0.61	+0.2
2,905,006	+		LRK54_RS13005	0.61	+0.3
2,905,007	-		LRK54_RS13005	0.61	+0.8
2,905,007	-		LRK54_RS13005	0.61	+1.0
2,905,007	-		LRK54_RS13005	0.61	+0.5
2,905,007	-		LRK54_RS13005	0.61	-0.2
2,905,007	-		LRK54_RS13005	0.61	+0.3
2,905,007	-		LRK54_RS13005	0.61	+0.7
2,905,007	-		LRK54_RS13005	0.61	+0.3
2,905,007	-		LRK54_RS13005	0.61	+0.9
2,905,007	-		LRK54_RS13005	0.61	-0.1
2,905,007	-		LRK54_RS13005	0.61	+0.3
2,905,007	-		LRK54_RS13005	0.61	-0.3
2,905,007	-		LRK54_RS13005	0.61	+0.2
2,905,007	-		LRK54_RS13005	0.61	+0.4
2,905,007	-		LRK54_RS13005	0.61	+0.1
2,905,007	-		LRK54_RS13005	0.61	+1.0
2,905,009	+		LRK54_RS13005	0.61	+0.1
2,905,009	+		LRK54_RS13005	0.61	+0.0
2,905,009	+		LRK54_RS13005	0.61	-0.6
2,905,009	+		LRK54_RS13005	0.61	+0.7
2,905,009	+		LRK54_RS13005	0.61	+0.2
2,905,009	+		LRK54_RS13005	0.61	+0.2
2,905,009	+		LRK54_RS13005	0.61	+0.3
2,905,009	+		LRK54_RS13005	0.61	+0.2
2,905,009	+		LRK54_RS13005	0.61	+0.8
2,905,009	+		LRK54_RS13005	0.61	+0.4
2,905,009	+		LRK54_RS13005	0.61	+0.2
2,905,009	+		LRK54_RS13005	0.61	+0.0
2,905,009	+		LRK54_RS13005	0.61	+0.6
2,905,009	+		LRK54_RS13005	0.61	+0.8
2,905,009	+		LRK54_RS13005	0.61	+0.2
2,905,010	-		LRK54_RS13005	0.62	+0.5
2,905,010	-		LRK54_RS13005	0.62	+0.4
2,905,010	-		LRK54_RS13005	0.62	-0.3
2,905,010	-		LRK54_RS13005	0.62	-0.4
2,905,010	-		LRK54_RS13005	0.62	+0.1
2,905,010	-		LRK54_RS13005	0.62	+2.4
2,905,010	-		LRK54_RS13005	0.62	+0.2
2,905,010	-		LRK54_RS13005	0.62	+0.7
2,905,010	-		LRK54_RS13005	0.62	+0.3
2,905,010	-		LRK54_RS13005	0.62	+0.7
2,905,017	+		LRK54_RS13005	0.62	-0.7
2,905,017	+		LRK54_RS13005	0.62	+1.3
2,905,017	+		LRK54_RS13005	0.62	+0.3
2,905,017	+		LRK54_RS13005	0.62	+0.2
2,905,017	+		LRK54_RS13005	0.62	+1.3
2,905,017	+		LRK54_RS13005	0.62	+0.4
2,905,017	+		LRK54_RS13005	0.62	+1.2
2,905,017	+		LRK54_RS13005	0.62	+1.0
2,905,017	+		LRK54_RS13005	0.62	+0.2
2,905,018	-		LRK54_RS13005	0.62	-1.3
2,905,018	-		LRK54_RS13005	0.62	+0.5
2,905,018	-		LRK54_RS13005	0.62	+0.3
2,905,018	-		LRK54_RS13005	0.62	-0.5
2,905,018	-		LRK54_RS13005	0.62	+1.6
2,905,018	-		LRK54_RS13005	0.62	+1.6
2,905,282	+		LRK54_RS13005	0.81	+0.2
2,905,282	+		LRK54_RS13005	0.81	+0.9
2,905,282	+		LRK54_RS13005	0.81	+1.2
2,905,282	+		LRK54_RS13005	0.81	+0.1
2,905,282	+		LRK54_RS13005	0.81	-1.2
2,905,282	+		LRK54_RS13005	0.81	+0.0
2,905,283	-		LRK54_RS13005	0.81	+0.1
2,905,283	-		LRK54_RS13005	0.81	+0.3
2,905,283	-		LRK54_RS13005	0.81	-0.9
2,905,283	-		LRK54_RS13005	0.81	+0.5
2,905,283	-		LRK54_RS13005	0.81	+1.0
2,905,283	-		LRK54_RS13005	0.81	+0.6
2,905,319	+		LRK54_RS13005	0.83	+0.4
2,905,320	-		LRK54_RS13005	0.83	+1.0
2,905,320	-		LRK54_RS13005	0.83	+0.5
2,905,320	-		LRK54_RS13005	0.83	+0.6
2,905,468	+				+1.4
2,905,468	+				+0.2
2,905,468	+				+0.5
2,905,468	+				+0.1
2,905,468	+				+0.8
2,905,468	+				+1.1
2,905,468	+				+0.2
2,905,468	+				+0.2
2,905,469	-				+1.3
2,905,469	-				-0.4
2,905,469	-				-0.2
2,905,469	-				+0.9
2,905,469	-				+0.5
2,905,469	-				+0.8
2,905,469	-				+0.5
2,905,620	+				+0.1
2,905,620	+				+0.2
2,905,620	+				-0.1
2,905,621	-				+0.2
2,905,621	-				+0.3
2,905,621	-				-0.5
2,905,621	-				-1.6
2,905,646	-				+0.2
2,905,816	-		LRK54_RS13010	0.11	+0.5
2,905,843	+		LRK54_RS13010	0.14	+0.4
2,905,843	+		LRK54_RS13010	0.14	+0.3
2,905,843	+		LRK54_RS13010	0.14	+0.3
2,905,843	+		LRK54_RS13010	0.14	+0.9
2,905,843	+		LRK54_RS13010	0.14	+1.2
2,905,843	+		LRK54_RS13010	0.14	+0.3
2,905,843	+		LRK54_RS13010	0.14	+0.5
2,905,843	+		LRK54_RS13010	0.14	+0.5
2,905,843	+		LRK54_RS13010	0.14	+0.5
2,905,843	+		LRK54_RS13010	0.14	+0.9
2,905,843	+		LRK54_RS13010	0.14	+0.2
2,905,843	+		LRK54_RS13010	0.14	+0.4
2,905,843	+		LRK54_RS13010	0.14	-0.1
2,905,843	+		LRK54_RS13010	0.14	+0.6
2,905,843	+		LRK54_RS13010	0.14	+0.5
2,905,843	+		LRK54_RS13010	0.14	-0.3
2,905,843	+		LRK54_RS13010	0.14	+0.8
2,905,843	+		LRK54_RS13010	0.14	+0.6
2,905,844	-		LRK54_RS13010	0.14	+0.8
2,905,844	-		LRK54_RS13010	0.14	+0.5
2,905,844	-		LRK54_RS13010	0.14	+1.1
2,905,844	-		LRK54_RS13010	0.14	+0.4
2,905,844	-		LRK54_RS13010	0.14	+0.3
2,905,844	-		LRK54_RS13010	0.14	+1.0
2,905,844	-		LRK54_RS13010	0.14	+1.7
2,905,844	-		LRK54_RS13010	0.14	-0.4
2,905,844	-		LRK54_RS13010	0.14	+1.1
2,905,844	-		LRK54_RS13010	0.14	-0.2
2,905,844	-		LRK54_RS13010	0.14	+1.8
2,905,844	-		LRK54_RS13010	0.14	+0.6
2,905,844	-		LRK54_RS13010	0.14	+0.4
2,905,844	-		LRK54_RS13010	0.14	+1.1
2,905,844	-		LRK54_RS13010	0.14	+0.1
2,905,844	-		LRK54_RS13010	0.14	+1.4
2,905,844	-		LRK54_RS13010	0.14	+0.5
2,905,844	-		LRK54_RS13010	0.14	-0.4
2,905,844	-		LRK54_RS13010	0.14	+0.5
2,905,844	-		LRK54_RS13010	0.14	+1.1
2,905,999	+		LRK54_RS13010	0.29	-0.3
2,906,102	-		LRK54_RS13010	0.39	-0.0
2,906,102	-		LRK54_RS13010	0.39	+0.4
2,906,102	-		LRK54_RS13010	0.39	+1.5
2,906,110	+		LRK54_RS13010	0.40	-0.4
2,906,110	+		LRK54_RS13010	0.40	+0.7
2,906,110	+		LRK54_RS13010	0.40	+0.4
2,906,110	+		LRK54_RS13010	0.40	+0.3
2,906,110	+		LRK54_RS13010	0.40	+0.6
2,906,110	+		LRK54_RS13010	0.40	+0.9
2,906,110	+		LRK54_RS13010	0.40	+1.2
2,906,110	+		LRK54_RS13010	0.40	+0.7
2,906,111	-		LRK54_RS13010	0.40	+0.1
2,906,111	-		LRK54_RS13010	0.40	+2.2
2,906,111	-		LRK54_RS13010	0.40	-0.1
2,906,111	-		LRK54_RS13010	0.40	+0.2
2,906,111	-		LRK54_RS13010	0.40	+0.5
2,906,112	+		LRK54_RS13010	0.40	+0.4
2,906,326	+		LRK54_RS13010	0.61	+0.4
2,906,407	+		LRK54_RS13010	0.69	+0.5
2,906,408	-		LRK54_RS13010	0.69	+0.3
2,906,456	+		LRK54_RS13010	0.74	-0.6
2,906,747	+				-0.5
2,906,747	+				-0.2
2,906,771	-				-0.4
2,906,789	+				-0.7
2,906,789	+				+0.0
2,906,789	+				-0.1
2,906,790	-				-0.7
2,906,790	-				+0.0
2,906,879	+				-0.8
2,906,879	+				-0.6
2,906,879	+				-0.2
2,906,879	+				-1.5
2,906,879	+				+0.1
2,906,879	+				+0.8
2,906,879	+				+0.4
2,906,879	+				+0.4
2,906,879	+				-1.2
2,906,879	+				+0.2
2,906,879	+				+0.3
2,906,879	+				-2.0
2,906,879	+				+0.7
2,906,879	+				-0.3
2,906,879	+				+0.2
2,906,879	+				-0.3
2,906,879	+				-0.2
2,906,880	-				+0.5
2,906,880	-				+1.0
2,906,880	-				+0.4
2,906,880	-				+0.3
2,906,880	-				-0.6
2,906,880	-				-0.1
2,906,880	-				-0.4
2,906,906	+				-0.1
2,906,906	+				-0.9
2,906,906	+				-1.6
2,906,907	-				-1.2
2,906,907	-				-0.0
2,906,912	+				-0.5
2,906,912	+				+0.9
2,906,912	+				-0.0
2,906,912	+				+0.1
2,906,912	+				+0.7
2,906,912	+				+1.1
2,906,912	+				-0.0
2,906,912	+				-1.2
2,906,912	+				-1.1
2,906,912	+				-0.3
2,906,912	+				-0.3
2,906,913	-				+0.2
2,906,913	-				-0.2
2,906,913	-				+0.3
2,906,913	-				-0.5
2,906,913	-				-0.7
2,906,913	-				+0.9
2,906,913	-				+0.4
2,906,913	-				-0.9
2,906,913	-				+0.0
2,906,913	-				+0.1
2,907,071	+		LRK54_RS13015	0.10	+0.8
2,907,071	+		LRK54_RS13015	0.10	-0.8
2,907,072	-		LRK54_RS13015	0.10	+0.2
2,907,072	-		LRK54_RS13015	0.10	-0.4
2,907,072	-		LRK54_RS13015	0.10	+0.7
2,907,080	+		LRK54_RS13015	0.10	-0.6
2,907,080	+		LRK54_RS13015	0.10	-0.6
2,907,080	+		LRK54_RS13015	0.10	-0.4
2,907,080	+		LRK54_RS13015	0.10	-0.1
2,907,080	+		LRK54_RS13015	0.10	+0.3
2,907,081	-		LRK54_RS13015	0.10	-0.9
2,907,081	-		LRK54_RS13015	0.10	+0.3
2,907,081	-		LRK54_RS13015	0.10	-0.1
2,907,107	+		LRK54_RS13015	0.12	-2.1
2,907,108	-		LRK54_RS13015	0.12	-3.2
2,907,108	-		LRK54_RS13015	0.12	+0.3
2,907,108	-		LRK54_RS13015	0.12	+1.1
2,907,108	-		LRK54_RS13015	0.12	+0.3
2,907,108	-		LRK54_RS13015	0.12	+0.5
2,907,108	-		LRK54_RS13015	0.12	+0.5
2,907,108	-		LRK54_RS13015	0.12	-0.8
2,907,134	+		LRK54_RS13015	0.13	+0.3
2,907,134	+		LRK54_RS13015	0.13	-0.1
2,907,134	+		LRK54_RS13015	0.13	-1.0
2,907,134	+		LRK54_RS13015	0.13	-1.4
2,907,134	+		LRK54_RS13015	0.13	+0.4
2,907,135	-		LRK54_RS13015	0.13	+0.5
2,907,135	-		LRK54_RS13015	0.13	-0.6
2,907,135	-		LRK54_RS13015	0.13	+0.4
2,907,135	-		LRK54_RS13015	0.13	-0.4
2,907,135	-		LRK54_RS13015	0.13	-1.2
2,907,135	-		LRK54_RS13015	0.13	-0.2
2,907,135	-		LRK54_RS13015	0.13	+0.2
2,907,135	-		LRK54_RS13015	0.13	+0.1
2,907,135	-		LRK54_RS13015	0.13	+0.0
2,907,135	-		LRK54_RS13015	0.13	+2.2
2,907,356	+		LRK54_RS13015	0.21	-0.1
2,907,356	+		LRK54_RS13015	0.21	-1.1
2,907,356	+		LRK54_RS13015	0.21	+0.4
2,907,356	+		LRK54_RS13015	0.21	-0.8
2,907,356	+		LRK54_RS13015	0.21	-0.1
2,907,356	+		LRK54_RS13015	0.21	-0.6
2,907,356	+		LRK54_RS13015	0.21	-0.1
2,907,356	+		LRK54_RS13015	0.21	-1.3
2,907,357	-		LRK54_RS13015	0.22	-0.7
2,907,357	-		LRK54_RS13015	0.22	-0.0
2,907,357	-		LRK54_RS13015	0.22	-0.9
2,907,357	-		LRK54_RS13015	0.22	-0.6
2,907,464	+		LRK54_RS13015	0.26	-0.8
2,907,476	+		LRK54_RS13015	0.26	-0.2
2,907,476	+		LRK54_RS13015	0.26	-0.5
2,907,477	-		LRK54_RS13015	0.26	+1.3
2,907,477	-		LRK54_RS13015	0.26	+0.9
2,907,477	-		LRK54_RS13015	0.26	+0.7
2,907,569	+		LRK54_RS13015	0.30	+0.0
2,907,569	+		LRK54_RS13015	0.30	-0.6
2,907,569	+		LRK54_RS13015	0.30	-0.1
2,907,569	+		LRK54_RS13015	0.30	+0.3
2,907,569	+		LRK54_RS13015	0.30	+0.7
2,907,570	-		LRK54_RS13015	0.30	-0.2
2,907,570	-		LRK54_RS13015	0.30	+0.4
2,907,570	-		LRK54_RS13015	0.30	+0.7
2,907,570	-		LRK54_RS13015	0.30	-0.4
2,907,570	-		LRK54_RS13015	0.30	-0.0
2,907,570	-		LRK54_RS13015	0.30	-0.4
2,907,570	-		LRK54_RS13015	0.30	+0.1