Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12980

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,898,572	+		LRK54_RS12975	0.43	+0.9
2,898,572	+		LRK54_RS12975	0.43	-1.4
2,898,572	+		LRK54_RS12975	0.43	-1.1
2,898,573	-		LRK54_RS12975	0.43	-0.3
2,898,573	-		LRK54_RS12975	0.43	+0.3
2,898,590	+		LRK54_RS12975	0.45	+0.7
2,898,591	-		LRK54_RS12975	0.45	-0.4
2,898,654	+		LRK54_RS12975	0.49	-0.2
2,898,655	-		LRK54_RS12975	0.49	-0.5
2,898,914	+		LRK54_RS12975	0.69	-1.5
2,898,914	+		LRK54_RS12975	0.69	+0.1
2,898,914	+		LRK54_RS12975	0.69	+0.8
2,898,914	+		LRK54_RS12975	0.69	+0.4
2,898,914	+		LRK54_RS12975	0.69	-0.2
2,898,914	+		LRK54_RS12975	0.69	-0.0
2,898,915	-		LRK54_RS12975	0.69	+1.2
2,898,915	-		LRK54_RS12975	0.69	-0.8
2,898,915	-		LRK54_RS12975	0.69	-0.1
2,899,032	-		LRK54_RS12975	0.78	-1.3
2,899,032	-		LRK54_RS12975	0.78	+0.7
2,899,360	+				+0.3
2,899,360	+				-0.5
2,899,360	+				+0.6
2,899,360	+				-0.2
2,899,360	+				+0.0
2,899,360	+				-0.5
2,899,360	+				-1.0
2,899,360	+				-0.3
2,899,360	+				-1.5
2,899,360	+				+0.1
2,899,361	-				-0.1
2,899,361	-				-1.3
2,899,361	-				-0.5
2,899,361	-				-0.4
2,899,361	-				-1.0
2,899,361	-				+0.5
2,899,361	-				-0.4
2,899,361	-				-0.4
2,899,361	-				-0.8
2,899,430	+				+0.3
2,899,430	+				-1.1
2,899,430	+				-0.6
2,899,430	+				+0.4
2,899,430	+				-0.6
2,899,430	+				-1.8
2,899,431	-				+1.5
2,899,431	-				+0.0
2,899,431	-				+1.0
2,899,431	-				-0.2
2,899,431	-				+1.1
2,899,431	-				+0.6
2,899,431	-				+0.5
2,899,486	+				+0.9
2,899,511	+				-0.1
2,899,511	+				+0.6
2,899,511	+				+0.0
2,899,511	+				+0.7
2,899,511	+				+0.6
2,899,511	+				-0.0
2,899,511	+				+0.4
2,899,511	+				+0.2
2,899,511	+				-0.0
2,899,511	+				+0.0
2,899,511	+				+0.7
2,899,511	+				+0.7
2,899,511	+				+0.9
2,899,511	+				-0.1
2,899,511	+				+1.3
2,899,511	+				+0.7
2,899,511	+				+0.8
2,899,511	+				-0.4
2,899,512	-				-0.4
2,899,512	-				+0.8
2,899,512	-				-0.1
2,899,512	-				+0.8
2,899,512	-				-0.7
2,899,512	-				-0.5
2,899,512	-				-0.5
2,899,512	-				-0.4
2,899,512	-				+0.5
2,899,512	-				+0.9
2,899,512	-				+0.2
2,899,512	-				+0.4
2,899,512	-				+0.1
2,899,512	-				-0.1
2,899,512	-				+0.3
2,899,512	-				+0.5
2,899,512	-				+0.4
2,899,512	-				-0.2
2,899,512	-				+0.6
2,899,512	-				+0.7
2,899,727	+		LRK54_RS12980	0.41	-0.1
2,899,727	+		LRK54_RS12980	0.41	+0.7
2,899,727	+		LRK54_RS12980	0.41	+1.2
2,899,727	+		LRK54_RS12980	0.41	+0.5
2,899,727	+		LRK54_RS12980	0.41	+0.7
2,899,727	+		LRK54_RS12980	0.41	+1.1
2,899,727	+		LRK54_RS12980	0.41	+1.1
2,899,727	+		LRK54_RS12980	0.41	+0.4
2,899,727	+		LRK54_RS12980	0.41	+0.3
2,899,727	+		LRK54_RS12980	0.41	+1.0
2,899,728	-		LRK54_RS12980	0.41	+0.4
2,899,728	-		LRK54_RS12980	0.41	-0.7
2,899,728	-		LRK54_RS12980	0.41	+0.5
2,899,728	-		LRK54_RS12980	0.41	+1.4
2,899,728	-		LRK54_RS12980	0.41	-0.1
2,899,728	-		LRK54_RS12980	0.41	+0.4
2,899,728	-		LRK54_RS12980	0.41	+0.6
2,899,766	+		LRK54_RS12980	0.47	+0.4
2,899,766	+		LRK54_RS12980	0.47	+1.3
2,899,766	+		LRK54_RS12980	0.47	+0.1
2,899,970	+		LRK54_RS12980	0.80	+0.8
2,899,970	+		LRK54_RS12980	0.80	+0.9
2,899,970	+		LRK54_RS12980	0.80	+1.0
2,899,970	+		LRK54_RS12980	0.80	+0.8
2,899,970	+		LRK54_RS12980	0.80	+1.0
2,899,970	+		LRK54_RS12980	0.80	+0.6
2,899,970	+		LRK54_RS12980	0.80	+0.8
2,899,970	+		LRK54_RS12980	0.80	+1.5
2,899,970	+		LRK54_RS12980	0.80	-0.1
2,899,970	+		LRK54_RS12980	0.80	-0.4
2,899,970	+		LRK54_RS12980	0.80	+0.0
2,899,971	-		LRK54_RS12980	0.80	-0.1
2,899,971	-		LRK54_RS12980	0.80	+0.2
2,899,971	-		LRK54_RS12980	0.80	+0.8
2,899,971	-		LRK54_RS12980	0.80	-0.2
2,899,971	-		LRK54_RS12980	0.80	+0.5
2,899,971	-		LRK54_RS12980	0.80	+1.5
2,899,971	-		LRK54_RS12980	0.80	-0.7
2,899,971	-		LRK54_RS12980	0.80	+0.9
2,899,971	-		LRK54_RS12980	0.80	+0.7
2,900,072	+				+0.6
2,900,072	+				+0.7
2,900,072	+				+0.0
2,900,072	+				+0.4
2,900,073	-				+0.6
2,900,073	-				-0.3
2,900,073	-				+0.8
2,900,222	+				+0.4
2,900,222	+				-0.3
2,900,222	+				+1.1
2,900,222	+				+1.0
2,900,222	+				+1.3
2,900,222	+				-0.1
2,900,222	+				+1.7
2,900,222	+				+1.3
2,900,222	+				+0.8
2,900,222	+				+0.7
2,900,222	+				+0.4
2,900,222	+				+1.2
2,900,222	+				+0.8
2,900,222	+				+1.4
2,900,222	+				+0.5
2,900,222	+				+0.7
2,900,222	+				-0.3
2,900,222	+				+0.3
2,900,222	+				+0.4
2,900,222	+				+0.5
2,900,222	+				+1.5
2,900,222	+				+0.8
2,900,222	+				+0.3
2,900,222	+				+0.7
2,900,223	-				+1.4
2,900,223	-				+1.1
2,900,223	-				+1.1
2,900,223	-				+1.1
2,900,223	-				+1.4
2,900,223	-				+0.2
2,900,223	-				+0.7
2,900,223	-				-0.1
2,900,223	-				+1.0
2,900,223	-				+2.5
2,900,223	-				+0.8
2,900,223	-				+0.8
2,900,223	-				+1.6
2,900,223	-				+0.4
2,900,223	-				-0.3
2,900,672	+		LRK54_RS12985	0.44	+0.5
2,900,672	+		LRK54_RS12985	0.44	+0.5
2,900,672	+		LRK54_RS12985	0.44	+0.5
2,900,672	+		LRK54_RS12985	0.44	+1.1
2,900,672	+		LRK54_RS12985	0.44	+0.2
2,900,672	+		LRK54_RS12985	0.44	+1.6
2,900,672	+		LRK54_RS12985	0.44	+1.3
2,900,672	+		LRK54_RS12985	0.44	+0.3
2,900,672	+		LRK54_RS12985	0.44	+0.5
2,900,672	+		LRK54_RS12985	0.44	+0.7
2,900,673	-		LRK54_RS12985	0.45	+0.3
2,900,673	-		LRK54_RS12985	0.45	-0.1
2,900,673	-		LRK54_RS12985	0.45	-0.4
2,900,673	-		LRK54_RS12985	0.45	+1.1
2,900,673	-		LRK54_RS12985	0.45	+1.1
2,900,673	-		LRK54_RS12985	0.45	+0.2
2,900,673	-		LRK54_RS12985	0.45	+1.2
2,900,673	-		LRK54_RS12985	0.45	+0.8
2,900,673	-		LRK54_RS12985	0.45	+0.9
2,900,673	-		LRK54_RS12985	0.45	+1.1
2,900,673	-		LRK54_RS12985	0.45	+0.3
2,900,673	-		LRK54_RS12985	0.45	+0.1
2,900,673	-		LRK54_RS12985	0.45	-0.0
2,900,673	-		LRK54_RS12985	0.45	-0.6
2,900,673	-		LRK54_RS12985	0.45	+0.5
2,900,673	-		LRK54_RS12985	0.45	+0.5