Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12010

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,661,230	+		LRK54_RS12005	0.28	-1.9
2,661,230	+		LRK54_RS12005	0.28	-2.0
2,661,230	+		LRK54_RS12005	0.28	-0.6
2,661,230	+		LRK54_RS12005	0.28	-0.4
2,661,230	+		LRK54_RS12005	0.28	-0.2
2,661,230	+		LRK54_RS12005	0.28	-0.7
2,661,230	+		LRK54_RS12005	0.28	-1.9
2,661,231	-		LRK54_RS12005	0.28	-0.7
2,661,231	-		LRK54_RS12005	0.28	+0.3
2,661,231	-		LRK54_RS12005	0.28	-0.3
2,661,485	+		LRK54_RS12005	0.55	-0.3
2,661,485	+		LRK54_RS12005	0.55	-1.4
2,661,485	+		LRK54_RS12005	0.55	-0.1
2,661,486	-		LRK54_RS12005	0.55	-1.4
2,661,972	+				-1.1
2,661,972	+				+0.5
2,661,973	-				+0.2
2,661,987	+				+0.2
2,661,987	+				+0.6
2,661,987	+				+1.1
2,661,988	-				-0.1
2,661,988	-				+0.4
2,661,988	-				-1.7
2,661,988	-				-0.5
2,661,989	+				-0.9
2,661,989	+				-0.8
2,661,989	+				-0.7
2,661,989	+				+1.4
2,661,989	+				-0.5
2,661,989	+				+0.3
2,661,989	+				+0.5
2,661,989	+				-1.0
2,661,989	+				-0.1
2,661,990	+				-0.3
2,661,990	-				-0.6
2,661,990	-				-0.2
2,661,990	-				-0.2
2,661,990	-				+0.2
2,661,990	-				+0.4
2,662,050	+				-0.6
2,662,061	+				+0.7
2,662,061	+				+0.1
2,662,061	+				+0.2
2,662,061	+				+1.1
2,662,061	+				+0.5
2,662,061	+				+1.8
2,662,061	+				+0.5
2,662,061	+				-0.1
2,662,061	+				-0.5
2,662,061	+				+0.4
2,662,062	-				-0.2
2,662,062	-				-0.6
2,662,062	-				+0.6
2,662,062	-				+0.5
2,662,062	-				-0.0
2,662,062	-				-0.1
2,662,062	-				+0.0
2,662,062	-				-0.2
2,662,062	-				-0.0
2,662,062	-				-0.9
2,662,062	-				+0.4
2,662,062	-				-0.2
2,662,062	-				-0.3
2,662,062	-				-0.7
2,662,062	-				+0.5
2,662,062	-				-0.4
2,662,062	-				+0.0
2,662,062	-				-0.3
2,662,175	+				+0.4
2,662,175	+				+0.4
2,662,175	+				-0.4
2,662,175	+				+0.1
2,662,175	+				+0.4
2,662,175	+				+0.1
2,662,175	+				+2.1
2,662,175	+				+0.2
2,662,176	-				-0.4
2,662,176	-				+0.1
2,662,176	-				-1.0
2,662,176	-				+0.4
2,662,176	-				-0.8
2,662,176	-				-1.2
2,662,176	-				+0.8
2,662,176	-				-0.2
2,662,176	-				-0.1
2,662,176	-				-0.1
2,662,176	-				-0.6
2,662,219	+				+0.1
2,662,219	+				+0.7
2,662,219	+				+0.0
2,662,219	+				-0.3
2,662,219	+				-0.3
2,662,219	+				-0.1
2,662,219	+				+0.4
2,662,220	-				+0.3
2,662,232	+				+1.5
2,662,232	+				+0.9
2,662,232	+				+0.9
2,662,232	+				+0.2
2,662,233	-				+0.9
2,662,233	-				+0.5
2,662,233	-				+0.3
2,662,279	+				-0.7
2,662,279	+				+0.5
2,662,279	+				-0.5
2,662,280	-				-2.0
2,662,280	-				-0.1
2,662,280	-				+0.3
2,662,409	+		LRK54_RS12010	0.27	+1.4
2,662,409	+		LRK54_RS12010	0.27	+0.5
2,662,410	-		LRK54_RS12010	0.27	-1.1
2,662,410	-		LRK54_RS12010	0.27	+0.6
2,662,410	-		LRK54_RS12010	0.27	+1.2
2,662,410	-		LRK54_RS12010	0.27	-0.2
2,662,519	+		LRK54_RS12010	0.43	+0.1
2,662,519	+		LRK54_RS12010	0.43	-0.1
2,662,519	+		LRK54_RS12010	0.43	+0.7
2,662,519	+		LRK54_RS12010	0.43	+0.8
2,662,519	+		LRK54_RS12010	0.43	+0.1
2,662,519	+		LRK54_RS12010	0.43	+1.1
2,662,519	+		LRK54_RS12010	0.43	-0.2
2,662,519	+		LRK54_RS12010	0.43	+0.6
2,662,519	+		LRK54_RS12010	0.43	+0.4
2,662,519	+		LRK54_RS12010	0.43	+1.8
2,662,519	+		LRK54_RS12010	0.43	+1.2
2,662,519	+		LRK54_RS12010	0.43	-0.2
2,662,519	+		LRK54_RS12010	0.43	+0.5
2,662,519	+		LRK54_RS12010	0.43	+0.7
2,662,519	+		LRK54_RS12010	0.43	+0.8
2,662,519	+		LRK54_RS12010	0.43	+0.8
2,662,519	+		LRK54_RS12010	0.43	+0.4
2,662,519	+		LRK54_RS12010	0.43	-1.1
2,662,519	+		LRK54_RS12010	0.43	+0.1
2,662,519	+		LRK54_RS12010	0.43	+0.9
2,662,519	+		LRK54_RS12010	0.43	-0.2
2,662,519	+		LRK54_RS12010	0.43	+1.0
2,662,520	-		LRK54_RS12010	0.43	+1.2
2,662,520	-		LRK54_RS12010	0.43	+0.7
2,662,520	-		LRK54_RS12010	0.43	+0.6
2,662,520	-		LRK54_RS12010	0.43	+0.6
2,662,520	-		LRK54_RS12010	0.43	-0.1
2,662,520	-		LRK54_RS12010	0.43	+0.6
2,662,520	-		LRK54_RS12010	0.43	+1.0
2,662,520	-		LRK54_RS12010	0.43	-0.5
2,662,520	-		LRK54_RS12010	0.43	+1.1
2,662,520	-		LRK54_RS12010	0.43	+0.5
2,662,520	-		LRK54_RS12010	0.43	+0.5
2,662,520	-		LRK54_RS12010	0.43	-0.5
2,662,520	-		LRK54_RS12010	0.43	+0.8
2,662,520	-		LRK54_RS12010	0.43	+0.9
2,662,520	-		LRK54_RS12010	0.43	+0.5
2,662,520	-		LRK54_RS12010	0.43	+0.2
2,662,520	-		LRK54_RS12010	0.43	+1.3
2,662,520	-		LRK54_RS12010	0.43	+1.1
2,662,520	-		LRK54_RS12010	0.43	+1.1
2,662,909	+				-0.0
2,662,909	+				+1.1
2,662,909	+				+0.9
2,662,909	+				+0.0
2,662,909	+				+0.9
2,662,909	+				-0.1
2,662,909	+				-0.1
2,662,909	+				+0.3
2,662,909	+				+0.8
2,662,909	+				+0.7
2,662,909	+				+1.7
2,662,910	-				+0.6
2,662,910	-				+0.7
2,662,910	-				+0.4
2,662,910	-				+1.8
2,662,910	-				+1.9
2,662,910	-				+1.3
2,663,135	+		LRK54_RS12015	0.19	+1.7
2,663,135	+		LRK54_RS12015	0.19	+1.0
2,663,135	+		LRK54_RS12015	0.19	+1.0
2,663,135	+		LRK54_RS12015	0.19	-0.8
2,663,135	+		LRK54_RS12015	0.19	-0.8
2,663,135	+		LRK54_RS12015	0.19	+1.1
2,663,135	+		LRK54_RS12015	0.19	+0.0
2,663,135	+		LRK54_RS12015	0.19	+1.2
2,663,135	+		LRK54_RS12015	0.19	+0.7
2,663,135	+		LRK54_RS12015	0.19	+2.0
2,663,135	+		LRK54_RS12015	0.19	+1.0
2,663,135	+		LRK54_RS12015	0.19	+0.5
2,663,135	+		LRK54_RS12015	0.19	+1.3
2,663,135	+		LRK54_RS12015	0.19	+0.4
2,663,135	+		LRK54_RS12015	0.19	+0.3
2,663,135	+		LRK54_RS12015	0.19	+0.3
2,663,135	+		LRK54_RS12015	0.19	+0.3
2,663,135	+		LRK54_RS12015	0.19	+0.7
2,663,136	-		LRK54_RS12015	0.19	+1.3
2,663,136	-		LRK54_RS12015	0.19	-0.4
2,663,136	-		LRK54_RS12015	0.19	+1.4
2,663,136	-		LRK54_RS12015	0.19	+0.9
2,663,136	-		LRK54_RS12015	0.19	+1.5
2,663,136	-		LRK54_RS12015	0.19	-0.6
2,663,136	-		LRK54_RS12015	0.19	+0.5
2,663,136	-		LRK54_RS12015	0.19	+0.7
2,663,136	-		LRK54_RS12015	0.19	+0.9
2,663,136	-		LRK54_RS12015	0.19	-0.7
2,663,136	-		LRK54_RS12015	0.19	+0.9
2,663,136	-		LRK54_RS12015	0.19	+1.2
2,663,136	-		LRK54_RS12015	0.19	+0.2
2,663,136	-		LRK54_RS12015	0.19	+0.8
2,663,136	-		LRK54_RS12015	0.19	+1.7
2,663,136	-		LRK54_RS12015	0.19	-1.1
2,663,136	-		LRK54_RS12015	0.19	+0.5
2,663,136	-		LRK54_RS12015	0.19	+0.6
2,663,136	-		LRK54_RS12015	0.19	+0.8
2,663,136	-		LRK54_RS12015	0.19	+1.2
2,663,136	-		LRK54_RS12015	0.19	+1.4
2,663,136	-		LRK54_RS12015	0.19	+0.6
2,663,219	+		LRK54_RS12015	0.25	+1.3
2,663,219	+		LRK54_RS12015	0.25	+1.0
2,663,219	+		LRK54_RS12015	0.25	+0.7
2,663,219	+		LRK54_RS12015	0.25	+0.7
2,663,219	+		LRK54_RS12015	0.25	+1.0
2,663,219	+		LRK54_RS12015	0.25	+0.0
2,663,219	+		LRK54_RS12015	0.25	+0.7
2,663,219	+		LRK54_RS12015	0.25	+1.1
2,663,219	+		LRK54_RS12015	0.25	+0.4
2,663,219	+		LRK54_RS12015	0.25	+0.1
2,663,219	+		LRK54_RS12015	0.25	+0.6
2,663,219	+		LRK54_RS12015	0.25	-0.3
2,663,219	+		LRK54_RS12015	0.25	+0.1
2,663,219	+		LRK54_RS12015	0.25	+0.3
2,663,219	+		LRK54_RS12015	0.25	+0.8
2,663,219	+		LRK54_RS12015	0.25	+0.8
2,663,219	+		LRK54_RS12015	0.25	-0.3
2,663,219	+		LRK54_RS12015	0.25	+1.1
2,663,219	+		LRK54_RS12015	0.25	+0.6
2,663,219	+		LRK54_RS12015	0.25	+1.1
2,663,219	+		LRK54_RS12015	0.25	+1.1
2,663,219	+		LRK54_RS12015	0.25	+0.6
2,663,219	+		LRK54_RS12015	0.25	+1.4
2,663,219	+		LRK54_RS12015	0.25	+0.9
2,663,219	+		LRK54_RS12015	0.25	-0.0
2,663,220	-		LRK54_RS12015	0.25	+0.8
2,663,220	-		LRK54_RS12015	0.25	+0.6
2,663,220	-		LRK54_RS12015	0.25	-0.3
2,663,220	-		LRK54_RS12015	0.25	+1.1
2,663,220	-		LRK54_RS12015	0.25	+1.5
2,663,220	-		LRK54_RS12015	0.25	+0.7
2,663,220	-		LRK54_RS12015	0.25	-0.1
2,663,220	-		LRK54_RS12015	0.25	+0.5
2,663,220	-		LRK54_RS12015	0.25	+0.2
2,663,220	-		LRK54_RS12015	0.25	-0.3
2,663,220	-		LRK54_RS12015	0.25	+0.7
2,663,220	-		LRK54_RS12015	0.25	+0.4
2,663,220	-		LRK54_RS12015	0.25	+2.6
2,663,220	-		LRK54_RS12015	0.25	+1.3
2,663,220	-		LRK54_RS12015	0.25	+1.2
2,663,220	-		LRK54_RS12015	0.25	+0.7
2,663,220	-		LRK54_RS12015	0.25	+0.9
2,663,267	+		LRK54_RS12015	0.29	+0.5
2,663,267	+		LRK54_RS12015	0.29	+0.8
2,663,267	+		LRK54_RS12015	0.29	+1.1
2,663,267	+		LRK54_RS12015	0.29	+0.3
2,663,267	+		LRK54_RS12015	0.29	+0.4
2,663,267	+		LRK54_RS12015	0.29	-0.3
2,663,267	+		LRK54_RS12015	0.29	+2.1
2,663,268	-		LRK54_RS12015	0.29	+0.3
2,663,268	-		LRK54_RS12015	0.29	+0.6
2,663,268	-		LRK54_RS12015	0.29	+2.1
2,663,328	+		LRK54_RS12015	0.34	+1.0
2,663,328	+		LRK54_RS12015	0.34	-0.0
2,663,328	+		LRK54_RS12015	0.34	+1.3
2,663,328	+		LRK54_RS12015	0.34	+0.2
2,663,328	+		LRK54_RS12015	0.34	+1.8
2,663,328	+		LRK54_RS12015	0.34	+0.5
2,663,328	+		LRK54_RS12015	0.34	+0.9
2,663,328	+		LRK54_RS12015	0.34	+1.3
2,663,329	-		LRK54_RS12015	0.34	+2.2
2,663,329	-		LRK54_RS12015	0.34	+0.0
2,663,329	-		LRK54_RS12015	0.34	+0.7
2,663,329	-		LRK54_RS12015	0.34	+1.0
2,663,329	-		LRK54_RS12015	0.34	+2.4
2,663,329	-		LRK54_RS12015	0.34	+0.9
2,663,329	-		LRK54_RS12015	0.34	+1.0
2,663,329	-		LRK54_RS12015	0.34	+0.6
2,663,329	-		LRK54_RS12015	0.34	+1.3
2,663,507	+		LRK54_RS12015	0.48	+1.0
2,663,507	+		LRK54_RS12015	0.48	+1.2
2,663,507	+		LRK54_RS12015	0.48	+0.3
2,663,507	+		LRK54_RS12015	0.48	+0.0
2,663,507	+		LRK54_RS12015	0.48	+0.4
2,663,507	+		LRK54_RS12015	0.48	+1.2
2,663,507	+		LRK54_RS12015	0.48	-0.5
2,663,508	-		LRK54_RS12015	0.48	+1.3
2,663,508	-		LRK54_RS12015	0.48	-0.6
2,663,508	-		LRK54_RS12015	0.48	+1.3
2,663,508	-		LRK54_RS12015	0.48	-0.1
2,663,508	-		LRK54_RS12015	0.48	+1.1