Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11860

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,628,116	+		LRK54_RS11855	0.68	-0.4
2,628,116	+		LRK54_RS11855	0.68	+1.2
2,628,116	+		LRK54_RS11855	0.68	+1.0
2,628,116	+		LRK54_RS11855	0.68	-0.0
2,628,116	+		LRK54_RS11855	0.68	-0.3
2,628,116	+		LRK54_RS11855	0.68	+0.3
2,628,116	+		LRK54_RS11855	0.68	-0.8
2,628,116	+		LRK54_RS11855	0.68	+0.2
2,628,117	-		LRK54_RS11855	0.68	+0.4
2,628,117	-		LRK54_RS11855	0.68	-0.1
2,628,117	-		LRK54_RS11855	0.68	+0.3
2,628,117	-		LRK54_RS11855	0.68	-1.5
2,628,117	-		LRK54_RS11855	0.68	-0.5
2,628,117	-		LRK54_RS11855	0.68	-0.2
2,628,117	-		LRK54_RS11855	0.68	-1.2
2,628,264	+		LRK54_RS11855	0.75	-0.4
2,628,264	+		LRK54_RS11855	0.75	+0.7
2,628,264	+		LRK54_RS11855	0.75	+0.3
2,628,264	+		LRK54_RS11855	0.75	-0.8
2,628,264	+		LRK54_RS11855	0.75	+0.7
2,628,264	+		LRK54_RS11855	0.75	-0.1
2,628,264	+		LRK54_RS11855	0.75	+0.5
2,628,264	+		LRK54_RS11855	0.75	+0.3
2,628,264	+		LRK54_RS11855	0.75	+2.1
2,628,265	-		LRK54_RS11855	0.75	+1.4
2,628,265	-		LRK54_RS11855	0.75	+0.3
2,628,265	-		LRK54_RS11855	0.75	-0.7
2,628,265	-		LRK54_RS11855	0.75	+0.7
2,628,387	+		LRK54_RS11855	0.80	+0.4
2,628,387	+		LRK54_RS11855	0.80	+0.1
2,628,387	+		LRK54_RS11855	0.80	-1.4
2,628,387	+		LRK54_RS11855	0.80	+0.1
2,628,387	+		LRK54_RS11855	0.80	+1.7
2,628,388	-		LRK54_RS11855	0.80	-0.0
2,628,388	-		LRK54_RS11855	0.80	-0.2
2,628,388	-		LRK54_RS11855	0.80	+1.0
2,628,507	+		LRK54_RS11855	0.86	-0.8
2,628,507	+		LRK54_RS11855	0.86	-0.1
2,628,507	+		LRK54_RS11855	0.86	-0.4
2,628,507	+		LRK54_RS11855	0.86	-0.1
2,628,507	+		LRK54_RS11855	0.86	-0.0
2,628,507	+		LRK54_RS11855	0.86	+0.9
2,628,508	-		LRK54_RS11855	0.86	+0.1
2,628,508	-		LRK54_RS11855	0.86	-0.5
2,628,508	-		LRK54_RS11855	0.86	-0.6
2,628,508	-		LRK54_RS11855	0.86	-0.8
2,628,508	-		LRK54_RS11855	0.86	+0.0
2,628,508	-		LRK54_RS11855	0.86	-0.1
2,628,546	+		LRK54_RS11855	0.88	+0.4
2,628,546	+		LRK54_RS11855	0.88	+0.0
2,628,546	+		LRK54_RS11855	0.88	+1.1
2,628,547	-		LRK54_RS11855	0.88	+0.2
2,628,547	-		LRK54_RS11855	0.88	+0.4
2,628,651	+				+0.1
2,628,651	+				+0.5
2,628,651	+				+0.1
2,628,651	+				+0.2
2,628,651	+				-0.4
2,628,651	+				-0.6
2,628,651	+				+0.3
2,628,651	+				+0.1
2,628,651	+				+0.4
2,628,651	+				-0.1
2,628,651	+				+0.2
2,628,651	+				+0.5
2,628,651	+				+0.3
2,628,651	+				-0.1
2,628,651	+				-0.4
2,628,652	-				+0.7
2,628,652	-				-0.3
2,628,652	-				-0.5
2,628,652	-				-0.2
2,628,652	-				-0.2
2,628,652	-				+0.4
2,628,652	-				-0.1
2,628,652	-				+0.8
2,628,652	-				-0.5
2,628,652	-				-0.3
2,628,652	-				-0.3
2,628,805	-				-0.6
2,628,805	-				-1.8
2,628,805	-				-0.7
2,628,805	-				-0.4
2,628,805	-				-0.0
2,628,805	-				-0.6
2,628,805	-				-0.1
2,628,805	-				+0.4
2,628,805	-				+1.1
2,628,805	-				-0.9
2,628,805	-				+0.0
2,628,913	+				-0.2
2,628,913	+				+0.3
2,628,913	+				-0.5
2,628,913	+				+0.3
2,628,914	-				+1.5
2,628,914	-				+0.2
2,628,914	-				+0.3
2,628,914	-				+0.5
2,628,914	-				-1.1
2,628,996	+				-0.5
2,628,996	+				-1.1
2,628,996	+				+0.8
2,628,996	+				-0.1
2,628,996	+				-0.1
2,628,996	+				-0.2
2,628,996	+				+0.0
2,628,996	+				+0.8
2,628,996	+				-0.3
2,628,996	+				+0.1
2,628,996	+				+2.4
2,628,996	+				+0.1
2,628,997	-				+0.1
2,628,997	-				+0.1
2,628,997	-				+1.7
2,628,997	-				+1.2
2,628,997	-				-0.1
2,628,997	-				-0.4
2,628,997	-				+1.0
2,628,997	-				+0.7
2,628,997	-				+0.6
2,628,997	-				-0.3
2,629,221	+		LRK54_RS11860	0.23	+0.5
2,629,563	-		LRK54_RS11860	0.57	-0.0
2,629,563	-		LRK54_RS11860	0.57	-0.7
2,629,699	+		LRK54_RS11860	0.71	+0.4
2,629,699	+		LRK54_RS11860	0.71	+0.4
2,629,699	+		LRK54_RS11860	0.71	+0.0
2,629,699	+		LRK54_RS11860	0.71	-0.2
2,629,699	+		LRK54_RS11860	0.71	+0.0
2,629,699	+		LRK54_RS11860	0.71	+0.8
2,629,699	+		LRK54_RS11860	0.71	+0.4
2,629,699	+		LRK54_RS11860	0.71	+0.8
2,629,700	-		LRK54_RS11860	0.71	-1.1
2,629,700	-		LRK54_RS11860	0.71	-1.3
2,629,700	-		LRK54_RS11860	0.71	+0.9
2,629,700	-		LRK54_RS11860	0.71	+0.8
2,629,700	-		LRK54_RS11860	0.71	-1.2
2,629,700	-		LRK54_RS11860	0.71	+0.2
2,629,700	-		LRK54_RS11860	0.71	+0.4
2,629,700	-		LRK54_RS11860	0.71	+0.4
2,629,846	+		LRK54_RS11860	0.86	+1.5
2,629,846	+		LRK54_RS11860	0.86	-0.8
2,629,846	+		LRK54_RS11860	0.86	-0.9
2,629,846	+		LRK54_RS11860	0.86	+0.1
2,629,846	+		LRK54_RS11860	0.86	+0.5
2,629,846	+		LRK54_RS11860	0.86	+0.1
2,629,846	+		LRK54_RS11860	0.86	+0.7
2,629,846	+		LRK54_RS11860	0.86	+0.3
2,629,846	+		LRK54_RS11860	0.86	-0.2
2,629,846	+		LRK54_RS11860	0.86	+0.4
2,629,847	-		LRK54_RS11860	0.86	+0.1
2,629,847	-		LRK54_RS11860	0.86	+1.8
2,629,847	-		LRK54_RS11860	0.86	-1.4
2,629,847	-		LRK54_RS11860	0.86	+0.3
2,629,847	-		LRK54_RS11860	0.86	+0.7
2,629,847	-		LRK54_RS11860	0.86	+0.4
2,629,847	-		LRK54_RS11860	0.86	+0.2
2,629,912	+				+0.1
2,629,912	+				+1.2
2,629,912	+				+0.0
2,629,912	+				-1.0
2,629,912	+				-0.7
2,629,912	+				-0.2
2,629,912	+				+0.3
2,629,912	+				+0.1
2,629,912	+				-0.2
2,629,913	-				-0.0
2,629,913	-				+0.5
2,629,913	-				+0.9
2,630,077	+		LRK54_RS11865	0.10	-1.0
2,630,077	+		LRK54_RS11865	0.10	+0.3
2,630,078	-		LRK54_RS11865	0.10	+0.0
2,630,134	+		LRK54_RS11865	0.16	+0.1
2,630,134	+		LRK54_RS11865	0.16	+0.4
2,630,134	+		LRK54_RS11865	0.16	+0.4
2,630,134	+		LRK54_RS11865	0.16	-1.4
2,630,134	+		LRK54_RS11865	0.16	+0.5
2,630,135	-		LRK54_RS11865	0.16	+0.4
2,630,135	-		LRK54_RS11865	0.16	+1.2
2,630,135	-		LRK54_RS11865	0.16	+0.2
2,630,135	-		LRK54_RS11865	0.16	+1.0
2,630,135	-		LRK54_RS11865	0.16	+0.0
2,630,136	+		LRK54_RS11865	0.16	+0.6
2,630,136	+		LRK54_RS11865	0.16	+1.2
2,630,136	+		LRK54_RS11865	0.16	+0.5
2,630,137	-		LRK54_RS11865	0.16	+0.4
2,630,154	+		LRK54_RS11865	0.18	+0.5
2,630,154	+		LRK54_RS11865	0.18	+0.6
2,630,154	+		LRK54_RS11865	0.18	+0.3
2,630,154	+		LRK54_RS11865	0.18	-0.4
2,630,154	+		LRK54_RS11865	0.18	-0.4
2,630,154	+		LRK54_RS11865	0.18	-0.1
2,630,154	+		LRK54_RS11865	0.18	+1.8
2,630,155	-		LRK54_RS11865	0.18	-0.6
2,630,155	-		LRK54_RS11865	0.18	-0.9
2,630,172	+		LRK54_RS11865	0.20	+0.3
2,630,172	+		LRK54_RS11865	0.20	+0.5
2,630,173	-		LRK54_RS11865	0.20	-0.2
2,630,173	-		LRK54_RS11865	0.20	+0.2
2,630,173	-		LRK54_RS11865	0.20	+0.3
2,630,371	-		LRK54_RS11865	0.41	-0.3
2,630,969	-		LRK54_RS11870	0.10	+0.8