Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11745

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,603,881	+		LRK54_RS11735	0.66	-0.5
2,603,881	+		LRK54_RS11735	0.66	-0.7
2,603,881	+		LRK54_RS11735	0.66	-0.2
2,603,881	+		LRK54_RS11735	0.66	+0.3
2,603,881	+		LRK54_RS11735	0.66	-0.6
2,603,881	+		LRK54_RS11735	0.66	-0.6
2,603,881	+		LRK54_RS11735	0.66	-0.5
2,603,881	+		LRK54_RS11735	0.66	+0.0
2,603,881	+		LRK54_RS11735	0.66	-0.9
2,603,881	+		LRK54_RS11735	0.66	-0.0
2,603,882	-		LRK54_RS11735	0.66	-0.5
2,603,882	-		LRK54_RS11735	0.66	+0.1
2,603,882	-		LRK54_RS11735	0.66	-1.4
2,603,882	-		LRK54_RS11735	0.66	+0.7
2,603,882	-		LRK54_RS11735	0.66	-0.2
2,603,882	-		LRK54_RS11735	0.66	-0.4
2,603,882	-		LRK54_RS11735	0.66	-1.2
2,603,882	-		LRK54_RS11735	0.66	-1.8
2,603,918	+		LRK54_RS11735	0.69	-0.7
2,603,918	+		LRK54_RS11735	0.69	-0.4
2,603,918	+		LRK54_RS11735	0.69	-0.7
2,603,918	+		LRK54_RS11735	0.69	-0.3
2,603,919	-		LRK54_RS11735	0.70	+0.4
2,603,919	-		LRK54_RS11735	0.70	-0.6
2,603,919	-		LRK54_RS11735	0.70	+0.9
2,603,919	-		LRK54_RS11735	0.70	-1.1
2,603,919	-		LRK54_RS11735	0.70	-0.0
2,603,919	-		LRK54_RS11735	0.70	-0.8
2,604,152	+		LRK54_RS11735	0.90	+0.2
2,604,152	+		LRK54_RS11735	0.90	+0.3
2,604,152	+		LRK54_RS11735	0.90	+0.0
2,604,152	+		LRK54_RS11735	0.90	-0.1
2,604,152	+		LRK54_RS11735	0.90	-1.0
2,604,152	+		LRK54_RS11735	0.90	-0.5
2,604,152	+		LRK54_RS11735	0.90	+0.4
2,604,152	+		LRK54_RS11735	0.90	-0.1
2,604,152	+		LRK54_RS11735	0.90	-2.0
2,604,152	+		LRK54_RS11735	0.90	-0.1
2,604,152	+		LRK54_RS11735	0.90	-0.5
2,604,152	+		LRK54_RS11735	0.90	+0.1
2,604,152	+		LRK54_RS11735	0.90	-0.8
2,604,153	-		LRK54_RS11735	0.90	-0.7
2,604,153	-		LRK54_RS11735	0.90	+0.0
2,604,153	-		LRK54_RS11735	0.90	-0.4
2,604,153	-		LRK54_RS11735	0.90	-2.0
2,604,153	-		LRK54_RS11735	0.90	-0.5
2,604,153	-		LRK54_RS11735	0.90	+0.7
2,604,153	-		LRK54_RS11735	0.90	+0.1
2,604,153	-		LRK54_RS11735	0.90	-0.9
2,604,153	-		LRK54_RS11735	0.90	+1.3
2,604,161	+				-0.8
2,604,161	+				-0.2
2,604,161	+				-0.7
2,604,161	+				-0.4
2,604,161	+				-1.0
2,604,161	+				-1.4
2,604,161	+				+0.3
2,604,162	-				+0.1
2,604,162	-				-1.5
2,604,162	-				+0.2
2,604,162	-				-0.2
2,604,162	-				+0.2
2,604,162	-				+0.2
2,604,206	+				+0.5
2,604,207	-				-0.4
2,604,207	-				+0.7
2,604,207	-				-1.0
2,604,242	+				+0.4
2,604,242	+				-0.1
2,604,242	+				+0.8
2,604,242	+				+0.4
2,604,242	+				-1.8
2,604,242	+				+0.2
2,604,242	+				-0.5
2,604,242	+				+1.0
2,604,242	+				-0.4
2,604,243	-				-0.3
2,604,243	-				+0.1
2,604,243	-				-0.6
2,604,243	-				-0.0
2,604,243	-				-0.5
2,604,243	-				-0.1
2,604,243	-				-0.0
2,604,243	-				-0.6
2,604,394	-		LRK54_RS11740	0.21	-0.7
2,604,403	+		LRK54_RS11740	0.22	-1.9
2,604,403	+		LRK54_RS11740	0.22	+0.2
2,604,404	-		LRK54_RS11740	0.22	+0.1
2,604,404	-		LRK54_RS11740	0.22	-0.2
2,604,404	-		LRK54_RS11740	0.22	+0.7
2,604,404	-		LRK54_RS11740	0.22	-0.0
2,604,404	-		LRK54_RS11740	0.22	-0.2
2,604,404	-		LRK54_RS11740	0.22	-0.8
2,604,404	-		LRK54_RS11740	0.22	-0.1
2,604,404	-		LRK54_RS11740	0.22	-0.1
2,604,404	-		LRK54_RS11740	0.22	+0.2
2,604,553	-		LRK54_RS11740	0.47	+0.7
2,604,608	-		LRK54_RS11740	0.56	+0.5
2,604,608	-		LRK54_RS11740	0.56	-0.2
2,604,619	+		LRK54_RS11740	0.58	+0.9
2,604,619	+		LRK54_RS11740	0.58	+0.4
2,604,619	+		LRK54_RS11740	0.58	+0.1
2,604,619	+		LRK54_RS11740	0.58	+0.1
2,604,619	+		LRK54_RS11740	0.58	+0.7
2,604,620	-		LRK54_RS11740	0.58	+0.2
2,604,620	-		LRK54_RS11740	0.58	-1.0
2,604,783	+		LRK54_RS11740	0.85	-0.0
2,604,783	+		LRK54_RS11740	0.85	+0.4
2,604,783	+		LRK54_RS11740	0.85	+0.1
2,604,784	-		LRK54_RS11740	0.86	+0.1
2,604,784	-		LRK54_RS11740	0.86	-0.2
2,604,784	-		LRK54_RS11740	0.86	+0.1
2,604,784	-		LRK54_RS11740	0.86	-0.2
2,604,784	-		LRK54_RS11740	0.86	-0.8
2,605,065	+		LRK54_RS11745	0.26	+1.6
2,605,065	+		LRK54_RS11745	0.26	+2.7
2,605,065	+		LRK54_RS11745	0.26	+1.0
2,605,065	+		LRK54_RS11745	0.26	+0.7
2,605,065	+		LRK54_RS11745	0.26	+0.5
2,605,066	-		LRK54_RS11745	0.26	+0.9
2,605,066	-		LRK54_RS11745	0.26	+1.0
2,605,066	-		LRK54_RS11745	0.26	+0.8
2,605,066	-		LRK54_RS11745	0.26	+1.3
2,605,095	+		LRK54_RS11745	0.30	+0.5
2,605,095	+		LRK54_RS11745	0.30	+0.8
2,605,095	+		LRK54_RS11745	0.30	+1.8
2,605,095	+		LRK54_RS11745	0.30	+1.4
2,605,095	+		LRK54_RS11745	0.30	+1.0
2,605,095	+		LRK54_RS11745	0.30	-1.3
2,605,095	+		LRK54_RS11745	0.30	+0.8
2,605,095	+		LRK54_RS11745	0.30	+1.5
2,605,095	+		LRK54_RS11745	0.30	+0.5
2,605,095	+				+0.5
2,605,095	+		LRK54_RS11745	0.30	+1.3
2,605,095	+		LRK54_RS11745	0.30	+1.1
2,605,095	+		LRK54_RS11745	0.30	+0.9
2,605,095	+		LRK54_RS11745	0.30	+1.3
2,605,095	+		LRK54_RS11745	0.30	+2.1
2,605,095	+		LRK54_RS11745	0.30	+0.4
2,605,095	+		LRK54_RS11745	0.30	+1.4
2,605,095	+		LRK54_RS11745	0.30	+0.3
2,605,095	+		LRK54_RS11745	0.30	+2.6
2,605,095	+		LRK54_RS11745	0.30	+2.5
2,605,095	+		LRK54_RS11745	0.30	+1.4
2,605,095	+		LRK54_RS11745	0.30	+0.9
2,605,095	+		LRK54_RS11745	0.30	+1.7
2,605,096	-		LRK54_RS11745	0.30	+1.3
2,605,096	-		LRK54_RS11745	0.30	+0.2
2,605,096	-		LRK54_RS11745	0.30	+0.1
2,605,096	-		LRK54_RS11745	0.30	+1.0
2,605,096	-		LRK54_RS11745	0.30	+1.0
2,605,096	-		LRK54_RS11745	0.30	+0.2
2,605,096	-		LRK54_RS11745	0.30	+0.1
2,605,096	-		LRK54_RS11745	0.30	+0.6
2,605,096	-		LRK54_RS11745	0.30	+1.7
2,605,096	-		LRK54_RS11745	0.30	+0.8
2,605,096	-		LRK54_RS11745	0.30	+0.5
2,605,096	-		LRK54_RS11745	0.30	+1.0
2,605,096	-		LRK54_RS11745	0.30	+0.7
2,605,096	-		LRK54_RS11745	0.30	+0.8
2,605,096	-		LRK54_RS11745	0.30	+0.5
2,605,096	-		LRK54_RS11745	0.30	+1.9
2,605,096	-		LRK54_RS11745	0.30	-0.1
2,605,096	-		LRK54_RS11745	0.30	+1.4
2,605,096	-		LRK54_RS11745	0.30	-0.5
2,605,096	-		LRK54_RS11745	0.30	+1.0
2,605,096	-		LRK54_RS11745	0.30	+0.5
2,605,096	-		LRK54_RS11745	0.30	+0.3
2,605,096	-		LRK54_RS11745	0.30	+1.1
2,605,194	+		LRK54_RS11745	0.44	+1.1
2,605,194	+		LRK54_RS11745	0.44	+1.1
2,605,195	-		LRK54_RS11745	0.44	+0.8
2,605,195	-		LRK54_RS11745	0.44	+1.3
2,605,195	-		LRK54_RS11745	0.44	+0.8
2,605,195	-		LRK54_RS11745	0.44	+0.4
2,605,195	-		LRK54_RS11745	0.44	+0.5
2,605,195	-		LRK54_RS11745	0.44	+0.4
2,605,195	-		LRK54_RS11745	0.44	-0.7
2,605,195	-		LRK54_RS11745	0.44	+0.1
2,605,195	-		LRK54_RS11745	0.44	+3.0
2,605,195	-		LRK54_RS11745	0.44	+0.7
2,605,195	-		LRK54_RS11745	0.44	+0.5
2,605,195	-		LRK54_RS11745	0.44	+1.6
2,605,195	-		LRK54_RS11745	0.44	+0.1
2,605,195	-		LRK54_RS11745	0.44	-0.3
2,605,407	+		LRK54_RS11745	0.73	-0.9
2,605,408	-		LRK54_RS11745	0.73	+0.5
2,605,408	-		LRK54_RS11745	0.73	-0.2
2,605,484	+		LRK54_RS11745	0.83	-0.2
2,605,484	+		LRK54_RS11745	0.83	+1.8
2,605,484	+		LRK54_RS11745	0.83	-0.1
2,605,485	-		LRK54_RS11745	0.83	+0.9
2,605,536	+				+1.4
2,605,536	+				+1.1
2,605,536	+				+0.8
2,605,536	+				+0.7
2,605,536	+				+0.3
2,605,537	-				-0.1
2,605,537	-				+0.6
2,605,537	-				+1.2
2,605,537	-				+0.7
2,605,537	-				+0.1
2,605,537	-				+0.5
2,605,646	+				-0.6
2,605,646	+				+0.5
2,605,647	-				-0.4
2,605,647	-				-0.6
2,605,647	-				-0.0
2,605,647	-				+0.1
2,605,704	+				+1.5
2,605,704	+				+0.0
2,605,773	+		LRK54_RS11750	0.10	+0.4
2,605,773	+		LRK54_RS11750	0.10	+0.4
2,605,773	+		LRK54_RS11750	0.10	-0.4
2,605,773	+		LRK54_RS11750	0.10	-1.2
2,605,773	+		LRK54_RS11750	0.10	+1.0
2,605,773	+		LRK54_RS11750	0.10	+0.2
2,605,773	+		LRK54_RS11750	0.10	+1.4
2,605,773	+		LRK54_RS11750	0.10	-0.2
2,606,080	+		LRK54_RS11750	0.46	+0.0
2,606,080	+		LRK54_RS11750	0.46	+0.3
2,606,080	+		LRK54_RS11750	0.46	+0.3
2,606,080	+		LRK54_RS11750	0.46	-1.9
2,606,503	+				+1.3
2,606,503	+				-0.2
2,606,503	+				+0.5
2,606,503	+				+0.7
2,606,503	+				-0.2
2,606,503	+				+0.7
2,606,503	+				+0.3
2,606,503	+				+0.5
2,606,503	+				+0.6
2,606,503	+				-0.5
2,606,503	+				-0.4
2,606,503	+				-0.1
2,606,503	+				+0.4
2,606,503	+				+0.1
2,606,503	+				+0.5
2,606,504	-				+1.4
2,606,504	-				-1.1
2,606,504	-				-0.4
2,606,504	-				+0.2
2,606,504	-				-0.0
2,606,504	-				-0.5