Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11230

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,492,946	+		LRK54_RS11225	0.11	-0.7
2,492,946	+		LRK54_RS11225	0.11	+0.6
2,492,946	+		LRK54_RS11225	0.11	-0.2
2,492,946	+		LRK54_RS11225	0.11	-0.5
2,492,946	+		LRK54_RS11225	0.11	-0.2
2,492,946	+		LRK54_RS11225	0.11	+0.5
2,492,946	+		LRK54_RS11225	0.11	+0.4
2,492,946	+		LRK54_RS11225	0.11	-0.8
2,492,946	+		LRK54_RS11225	0.11	+0.0
2,492,946	+		LRK54_RS11225	0.11	-0.2
2,492,946	+		LRK54_RS11225	0.11	-0.3
2,492,946	+		LRK54_RS11225	0.11	+0.7
2,492,946	+		LRK54_RS11225	0.11	-1.2
2,492,946	+		LRK54_RS11225	0.11	-0.6
2,492,946	+		LRK54_RS11225	0.11	-1.3
2,492,946	+		LRK54_RS11225	0.11	-0.8
2,492,946	+		LRK54_RS11225	0.11	-0.5
2,492,946	+		LRK54_RS11225	0.11	-0.9
2,492,947	-		LRK54_RS11225	0.11	-0.2
2,492,947	-		LRK54_RS11225	0.11	-1.6
2,492,947	-		LRK54_RS11225	0.11	+0.9
2,492,947	-		LRK54_RS11225	0.11	-0.1
2,492,947	-		LRK54_RS11225	0.11	-0.9
2,492,947	-		LRK54_RS11225	0.11	-0.7
2,492,947	-		LRK54_RS11225	0.11	-0.3
2,492,947	-		LRK54_RS11225	0.11	-0.5
2,492,947	-		LRK54_RS11225	0.11	-0.4
2,492,947	-		LRK54_RS11225	0.11	-0.4
2,492,947	-		LRK54_RS11225	0.11	-1.6
2,492,947	-		LRK54_RS11225	0.11	-0.1
2,492,947	-		LRK54_RS11225	0.11	+0.1
2,492,947	-		LRK54_RS11225	0.11	+0.3
2,492,947	-		LRK54_RS11225	0.11	-0.6
2,492,947	-		LRK54_RS11225	0.11	+0.2
2,492,947	-		LRK54_RS11225	0.11	-0.9
2,492,947	-		LRK54_RS11225	0.11	+0.7
2,492,947	-		LRK54_RS11225	0.11	-1.3
2,492,947	-		LRK54_RS11225	0.11	+0.6
2,493,049	+		LRK54_RS11225	0.23	-0.3
2,493,175	+		LRK54_RS11225	0.38	+0.5
2,493,175	+		LRK54_RS11225	0.38	+0.2
2,493,176	-		LRK54_RS11225	0.39	-0.6
2,493,184	+		LRK54_RS11225	0.40	-0.2
2,493,184	+		LRK54_RS11225	0.40	-0.2
2,493,184	+		LRK54_RS11225	0.40	+0.6
2,493,184	+		LRK54_RS11225	0.40	+0.1
2,493,184	+		LRK54_RS11225	0.40	-0.6
2,493,184	+		LRK54_RS11225	0.40	+0.1
2,493,185	-		LRK54_RS11225	0.40	-0.2
2,493,185	-		LRK54_RS11225	0.40	+0.2
2,493,185	-		LRK54_RS11225	0.40	-0.4
2,493,185	-		LRK54_RS11225	0.40	-0.6
2,493,185	-		LRK54_RS11225	0.40	+0.6
2,493,185	-		LRK54_RS11225	0.40	+0.4
2,493,185	-		LRK54_RS11225	0.40	-0.5
2,493,190	+		LRK54_RS11225	0.40	+0.2
2,493,190	+		LRK54_RS11225	0.40	-1.5
2,493,190	+		LRK54_RS11225	0.40	-0.1
2,493,190	+		LRK54_RS11225	0.40	-0.7
2,493,190	+		LRK54_RS11225	0.40	+0.4
2,493,190	+		LRK54_RS11225	0.40	+0.8
2,493,190	+		LRK54_RS11225	0.40	+0.5
2,493,190	+		LRK54_RS11225	0.40	+0.1
2,493,190	+		LRK54_RS11225	0.40	-0.4
2,493,190	+		LRK54_RS11225	0.40	-0.4
2,493,190	+		LRK54_RS11225	0.40	+0.8
2,493,190	+		LRK54_RS11225	0.40	+0.8
2,493,190	+		LRK54_RS11225	0.40	-0.3
2,493,190	+		LRK54_RS11225	0.40	+0.5
2,493,190	+		LRK54_RS11225	0.40	-0.1
2,493,190	+		LRK54_RS11225	0.40	-0.4
2,493,191	-		LRK54_RS11225	0.40	-0.1
2,493,191	-		LRK54_RS11225	0.40	-0.1
2,493,191	-		LRK54_RS11225	0.40	+0.3
2,493,191	-		LRK54_RS11225	0.40	-0.0
2,493,191	-		LRK54_RS11225	0.40	-0.9
2,493,191	-		LRK54_RS11225	0.40	+0.2
2,493,191	-		LRK54_RS11225	0.40	-0.7
2,493,191	-		LRK54_RS11225	0.40	-0.7
2,493,191	-		LRK54_RS11225	0.40	+0.7
2,493,191	-		LRK54_RS11225	0.40	-0.4
2,493,243	+		LRK54_RS11225	0.47	-1.3
2,493,244	-		LRK54_RS11225	0.47	+0.4
2,493,244	-		LRK54_RS11225	0.47	-0.2
2,493,277	+		LRK54_RS11225	0.51	-0.0
2,493,370	+		LRK54_RS11225	0.62	-0.2
2,493,370	+		LRK54_RS11225	0.62	-0.3
2,493,371	-		LRK54_RS11225	0.62	+0.0
2,493,371	-		LRK54_RS11225	0.62	+0.5
2,493,371	-		LRK54_RS11225	0.62	-0.5
2,493,433	+		LRK54_RS11225	0.70	+0.2
2,493,433	+		LRK54_RS11225	0.70	-0.3
2,493,433	+		LRK54_RS11225	0.70	-0.2
2,493,433	+		LRK54_RS11225	0.70	+0.3
2,493,433	+		LRK54_RS11225	0.70	-0.2
2,493,433	+		LRK54_RS11225	0.70	+0.5
2,493,433	+		LRK54_RS11225	0.70	-1.1
2,493,433	+		LRK54_RS11225	0.70	+0.1
2,493,434	-		LRK54_RS11225	0.70	-0.3
2,493,434	-		LRK54_RS11225	0.70	+0.0
2,493,434	-		LRK54_RS11225	0.70	-0.6
2,493,434	-		LRK54_RS11225	0.70	-0.0
2,493,434	-		LRK54_RS11225	0.70	+0.5
2,493,434	-		LRK54_RS11225	0.70	-0.8
2,493,434	-		LRK54_RS11225	0.70	-0.9
2,493,434	-		LRK54_RS11225	0.70	-0.4
2,493,541	+		LRK54_RS11225	0.83	-0.1
2,493,541	+		LRK54_RS11225	0.83	+0.2
2,493,756	-				-0.5
2,493,756	-				-0.3
2,493,756	-				-1.8
2,493,779	+				+0.6
2,493,779	+				-0.4
2,493,779	+				-0.3
2,493,779	+				-0.5
2,493,779	+				-0.5
2,493,780	-				-0.4
2,493,794	+				-0.5
2,493,794	+				-0.7
2,493,795	-				-0.1
2,493,795	-				-0.3
2,494,096	+		LRK54_RS11230	0.73	+0.2
2,494,096	+		LRK54_RS11230	0.73	+0.4
2,494,184	+				-0.3
2,494,184	+				+0.1
2,494,185	-				+0.0
2,494,185	-				+0.2
2,494,199	+				+0.2
2,494,199	+				-0.6
2,494,199	+				+0.4
2,494,199	+				+1.1
2,494,199	+				-0.9
2,494,199	+				-0.0
2,494,199	+				+0.1
2,494,199	+				+0.1
2,494,199	+				-1.3
2,494,199	+				-0.4
2,494,199	+				-0.4
2,494,200	-				-0.1
2,494,200	-				-1.1
2,494,200	-				+0.5
2,494,200	-				+0.1
2,494,200	-				+0.2
2,494,200	-				-0.3
2,494,200	-				-0.3
2,494,200	-				-0.9
2,494,200	-				-0.5
2,494,200	-				+0.1
2,494,200	-				+0.5
2,494,200	-				+0.9
2,494,200	-				-1.2
2,494,200	-				+1.5
2,494,200	-				+0.6
2,494,251	+				+0.3
2,494,251	+				-0.2
2,494,251	+				+0.6
2,494,251	+				-2.0
2,494,251	+				-0.5
2,494,251	+				-0.3
2,494,251	+				-0.2
2,494,252	-				+0.5
2,494,252	-				+0.1
2,494,252	-				-0.7
2,494,252	-				-1.2
2,494,252	-				-0.4
2,494,252	-				-0.2
2,494,252	-				+0.1
2,494,500	+				+0.3
2,494,500	+				-0.0
2,494,500	+				+0.1
2,494,500	+				-0.5
2,494,500	+				+0.1
2,494,500	+				+0.6
2,494,500	+				+0.1
2,494,500	+				-0.6
2,494,500	+				-0.0
2,494,500	+				+0.1
2,494,500	+				-1.1
2,494,500	+				+1.0
2,494,500	+				-0.1
2,494,500	+				+0.5
2,494,500	+				+0.2
2,494,500	+				-0.2
2,494,500	+				+0.2
2,494,500	+				-0.5
2,494,500	+				+0.1
2,494,500	+				+0.4
2,494,500	+				+0.7
2,494,500	+				-0.3
2,494,500	+				-0.4
2,494,500	+				+0.6
2,494,501	-				-0.5
2,494,501	-				+0.9
2,494,501	-				+0.4
2,494,501	-				-0.1
2,494,501	-				-0.3
2,494,501	-				+0.1
2,494,501	-				+1.3
2,494,501	-				+1.0
2,494,501	-				-0.4
2,494,501	-				-0.6
2,494,501	-				+0.1
2,494,501	-				+1.6
2,494,501	-				-0.2
2,494,501	-				-0.5
2,494,501	-				-0.3
2,494,501	-				-0.9
2,494,501	-				+0.1
2,494,501	-				-0.9
2,494,501	-				-0.5
2,494,501	-				+0.3
2,494,501	-				+1.0
2,494,523	+				-0.6
2,494,523	+				-0.1
2,494,523	+				+0.0
2,494,524	-				-0.2
2,494,524	-				+1.2
2,494,524	-				+0.1
2,494,544	+		LRK54_RS11235	0.12	-0.7
2,494,606	+		LRK54_RS11235	0.25	-0.3
2,494,606	+		LRK54_RS11235	0.25	+0.6
2,494,606	+		LRK54_RS11235	0.25	-0.5
2,494,606	+		LRK54_RS11235	0.25	-0.8
2,494,606	+		LRK54_RS11235	0.25	-0.2
2,494,606	+		LRK54_RS11235	0.25	+0.0
2,494,606	+		LRK54_RS11235	0.25	+0.1
2,494,606	+		LRK54_RS11235	0.25	+0.2
2,494,606	+		LRK54_RS11235	0.25	-0.6
2,494,606	+		LRK54_RS11235	0.25	+0.3
2,494,606	+		LRK54_RS11235	0.25	+1.0
2,494,606	+		LRK54_RS11235	0.25	-1.2
2,494,606	+		LRK54_RS11235	0.25	+0.5
2,494,606	+		LRK54_RS11235	0.25	-0.6
2,494,606	+		LRK54_RS11235	0.25	+0.1
2,494,606	+		LRK54_RS11235	0.25	-0.3
2,494,606	+		LRK54_RS11235	0.25	-0.1
2,494,606	+		LRK54_RS11235	0.25	+0.4
2,494,606	+		LRK54_RS11235	0.25	+0.1
2,494,607	-		LRK54_RS11235	0.26	-0.7
2,494,607	-		LRK54_RS11235	0.26	+0.7
2,494,607	-		LRK54_RS11235	0.26	+0.3
2,494,607	-		LRK54_RS11235	0.26	-0.9
2,494,607	-		LRK54_RS11235	0.26	+0.8
2,494,607	-		LRK54_RS11235	0.26	-0.8
2,494,607	-		LRK54_RS11235	0.26	-0.3
2,494,607	-		LRK54_RS11235	0.26	-0.3
2,494,607	-		LRK54_RS11235	0.26	-0.5
2,494,607	-		LRK54_RS11235	0.26	+0.2
2,494,607	-		LRK54_RS11235	0.26	-0.5
2,494,607	-		LRK54_RS11235	0.26	+0.1
2,494,607	-		LRK54_RS11235	0.26	+0.9
2,494,633	+		LRK54_RS11235	0.31	-0.0
2,494,633	+		LRK54_RS11235	0.31	-0.8
2,494,633	+		LRK54_RS11235	0.31	-0.3
2,494,633	+		LRK54_RS11235	0.31	-0.3
2,494,633	+		LRK54_RS11235	0.31	-0.1
2,494,633	+		LRK54_RS11235	0.31	+0.6
2,494,633	+		LRK54_RS11235	0.31	-0.4
2,494,633	+		LRK54_RS11235	0.31	+0.3
2,494,633	+		LRK54_RS11235	0.31	-0.8
2,494,633	+		LRK54_RS11235	0.31	+0.4
2,494,633	+		LRK54_RS11235	0.31	-0.0
2,494,633	+		LRK54_RS11235	0.31	-0.0
2,494,633	+		LRK54_RS11235	0.31	-0.5
2,494,633	+		LRK54_RS11235	0.31	+0.3
2,494,634	-		LRK54_RS11235	0.32	-1.0
2,494,634	-		LRK54_RS11235	0.32	+0.2
2,494,634	-		LRK54_RS11235	0.32	-0.3
2,494,634	-		LRK54_RS11235	0.32	-0.1
2,494,634	-		LRK54_RS11235	0.32	+0.0
2,494,634	-		LRK54_RS11235	0.32	+0.5
2,494,634	-		LRK54_RS11235	0.32	-0.4
2,494,634	-		LRK54_RS11235	0.32	-2.1
2,494,634	-		LRK54_RS11235	0.32	+1.0
2,494,634	-		LRK54_RS11235	0.32	+2.6
2,494,634	-		LRK54_RS11235	0.32	+0.2
2,494,634	-		LRK54_RS11235	0.32	-0.4
2,494,634	-		LRK54_RS11235	0.32	+0.1
2,494,634	-		LRK54_RS11235	0.32	-0.0
2,494,634	-		LRK54_RS11235	0.32	-0.6
2,494,634	-		LRK54_RS11235	0.32	-0.4
2,494,634	-		LRK54_RS11235	0.32	-0.1
2,494,634	-		LRK54_RS11235	0.32	+0.7
2,494,732	+		LRK54_RS11235	0.53	+0.1
2,494,732	+		LRK54_RS11235	0.53	-0.1
2,494,732	+		LRK54_RS11235	0.53	+0.6
2,494,732	+		LRK54_RS11235	0.53	-0.0
2,494,732	+		LRK54_RS11235	0.53	+0.2
2,494,732	+		LRK54_RS11235	0.53	-0.4
2,494,732	+		LRK54_RS11235	0.53	-0.5
2,494,732	+		LRK54_RS11235	0.53	+0.9
2,494,732	+		LRK54_RS11235	0.53	+0.3
2,494,732	+		LRK54_RS11235	0.53	-0.2
2,494,732	+		LRK54_RS11235	0.53	+0.1
2,494,732	+		LRK54_RS11235	0.53	+0.0
2,494,732	+		LRK54_RS11235	0.53	+0.9
2,494,732	+		LRK54_RS11235	0.53	-0.6
2,494,732	+		LRK54_RS11235	0.53	+0.4
2,494,732	+		LRK54_RS11235	0.53	+0.8
2,494,732	+		LRK54_RS11235	0.53	-0.3
2,494,732	+		LRK54_RS11235	0.53	+0.9
2,494,733	-		LRK54_RS11235	0.53	-1.4
2,494,733	-		LRK54_RS11235	0.53	-0.9
2,494,733	-		LRK54_RS11235	0.53	+1.0
2,494,733	-		LRK54_RS11235	0.53	-0.6
2,494,733	-		LRK54_RS11235	0.53	+0.1
2,494,733	-		LRK54_RS11235	0.53	+0.1
2,494,733	-		LRK54_RS11235	0.53	-0.2
2,494,733	-		LRK54_RS11235	0.53	+0.8
2,494,733	-		LRK54_RS11235	0.53	-0.3
2,494,733	-		LRK54_RS11235	0.53	-1.6
2,494,733	-		LRK54_RS11235	0.53	+0.3
2,494,733	-		LRK54_RS11235	0.53	+0.2
2,494,733	-		LRK54_RS11235	0.53	-0.2
2,494,733	-		LRK54_RS11235	0.53	-0.0
2,494,789	+		LRK54_RS11235	0.65	+0.8
2,494,789	+		LRK54_RS11235	0.65	+0.4
2,494,789	+		LRK54_RS11235	0.65	+0.0
2,494,789	+		LRK54_RS11235	0.65	-1.2
2,494,789	+		LRK54_RS11235	0.65	-0.2
2,494,790	-		LRK54_RS11235	0.66	-0.3
2,494,790	-		LRK54_RS11235	0.66	+0.9
2,494,790	-		LRK54_RS11235	0.66	+0.1
2,494,790	-		LRK54_RS11235	0.66	-0.3
2,494,798	+		LRK54_RS11235	0.67	+0.9
2,494,798	+		LRK54_RS11235	0.67	-0.0
2,494,798	+		LRK54_RS11235	0.67	+0.4
2,494,798	+		LRK54_RS11235	0.67	-0.0
2,494,799	-		LRK54_RS11235	0.68	-0.6
2,494,799	-		LRK54_RS11235	0.68	+0.2
2,494,799	-		LRK54_RS11235	0.68	+0.9
2,494,799	-		LRK54_RS11235	0.68	-0.5
2,495,004	+				-0.4
2,495,004	+				-0.9
2,495,004	+				-0.4
2,495,005	-				+0.3
2,495,195	+		LRK54_RS11240	0.14	+1.3