Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08505

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS08500 and LRK54_RS08505 are separated by 124 nucleotidesLRK54_RS08505 and LRK54_RS08510 are separated by 1 nucleotides LRK54_RS08500: LRK54_RS08500 - membrane protein insertase YidC, at 1,853,520 to 1,855,256 _RS08500 LRK54_RS08505: LRK54_RS08505 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 1,855,381 to 1,856,724 _RS08505 LRK54_RS08510: LRK54_RS08510 - ribokinase, at 1,856,726 to 1,857,622 _RS08510 Position (kb) 1855 1856 1857Strain fitness (log2 ratio) -2 -1 0 1 2at 1855.326 kb on + strandat 1855.327 kb on - strandat 1855.327 kb on - strandat 1855.327 kb on - strandat 1855.368 kb on + strandat 1855.369 kb on - strandat 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.600 kb on + strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.601 kb on - strand, within LRK54_RS08505at 1855.602 kb on + strand, within LRK54_RS08505at 1855.602 kb on + strand, within LRK54_RS08505at 1855.602 kb on + strand, within LRK54_RS08505at 1855.603 kb on - strand, within LRK54_RS08505at 1855.603 kb on - strand, within LRK54_RS08505at 1855.887 kb on + strand, within LRK54_RS08505at 1855.887 kb on + strand, within LRK54_RS08505at 1855.887 kb on + strand, within LRK54_RS08505at 1855.887 kb on + strand, within LRK54_RS08505at 1855.888 kb on - strand, within LRK54_RS08505at 1855.888 kb on - strand, within LRK54_RS08505at 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.668 kb on + strandat 1856.669 kb on - strandat 1856.669 kb on - strandat 1856.669 kb on - strandat 1856.669 kb on - strandat 1856.669 kb on - strandat 1856.669 kb on - strandat 1856.669 kb on - strandat 1856.669 kb on - strandat 1856.714 kb on + strandat 1856.714 kb on + strandat 1856.714 kb on + strandat 1856.714 kb on + strandat 1856.714 kb on + strandat 1856.714 kb on + strandat 1856.714 kb on + strandat 1856.714 kb on + strandat 1856.714 kb on + strandat 1856.714 kb on + strandat 1856.715 kb on - strandat 1856.715 kb on - strandat 1856.715 kb on - strandat 1856.715 kb on - strandat 1856.715 kb on - strandat 1856.715 kb on - strandat 1856.715 kb on - strandat 1856.834 kb on + strand, within LRK54_RS08510at 1856.834 kb on + strand, within LRK54_RS08510at 1856.835 kb on - strand, within LRK54_RS08510at 1856.835 kb on - strand, within LRK54_RS08510at 1857.087 kb on + strand, within LRK54_RS08510at 1857.087 kb on + strand, within LRK54_RS08510at 1857.087 kb on + strand, within LRK54_RS08510at 1857.087 kb on + strand, within LRK54_RS08510at 1857.087 kb on + strand, within LRK54_RS08510at 1857.087 kb on + strand, within LRK54_RS08510at 1857.087 kb on + strand, within LRK54_RS08510at 1857.087 kb on + strand, within LRK54_RS08510at 1857.088 kb on - strand, within LRK54_RS08510at 1857.088 kb on - strand, within LRK54_RS08510at 1857.088 kb on - strand, within LRK54_RS08510at 1857.088 kb on - strand, within LRK54_RS08510at 1857.088 kb on - strand, within LRK54_RS08510at 1857.088 kb on - strand, within LRK54_RS08510at 1857.215 kb on + strand, within LRK54_RS08510at 1857.215 kb on + strand, within LRK54_RS08510at 1857.215 kb on + strand, within LRK54_RS08510at 1857.215 kb on + strand, within LRK54_RS08510at 1857.215 kb on + strand, within LRK54_RS08510at 1857.215 kb on + strand, within LRK54_RS08510at 1857.215 kb on + strand, within LRK54_RS08510at 1857.215 kb on + strand, within LRK54_RS08510at 1857.215 kb on + strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.216 kb on - strand, within LRK54_RS08510at 1857.655 kb on + strandat 1857.655 kb on + strandat 1857.655 kb on + strandat 1857.655 kb on + strandat 1857.655 kb on + strandat 1857.656 kb on - strandat 1857.656 kb on - strandat 1857.656 kb on - strandat 1857.667 kb on + strandat 1857.667 kb on + strandat 1857.668 kb on - strandat 1857.668 kb on - strandat 1857.668 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,855,326 + +0.4
1,855,327 - -0.3
1,855,327 - +1.1
1,855,327 - -2.2
1,855,368 + +0.0
1,855,369 - -0.6
1,855,600 + LRK54_RS08505 0.16 +0.7
1,855,600 + LRK54_RS08505 0.16 +0.2
1,855,600 + LRK54_RS08505 0.16 +1.1
1,855,600 + LRK54_RS08505 0.16 +1.4
1,855,600 + LRK54_RS08505 0.16 -0.2
1,855,600 + LRK54_RS08505 0.16 +0.3
1,855,600 + LRK54_RS08505 0.16 +0.8
1,855,600 + LRK54_RS08505 0.16 +0.6
1,855,600 + LRK54_RS08505 0.16 +0.2
1,855,600 + LRK54_RS08505 0.16 -0.2
1,855,600 + LRK54_RS08505 0.16 -1.0
1,855,600 + LRK54_RS08505 0.16 +0.4
1,855,600 + LRK54_RS08505 0.16 -0.1
1,855,600 + LRK54_RS08505 0.16 +0.2
1,855,600 + LRK54_RS08505 0.16 -0.0
1,855,600 + LRK54_RS08505 0.16 +0.2
1,855,600 + LRK54_RS08505 0.16 +1.9
1,855,600 + LRK54_RS08505 0.16 -0.5
1,855,600 + LRK54_RS08505 0.16 +0.1
1,855,600 + LRK54_RS08505 0.16 +0.0
1,855,600 + LRK54_RS08505 0.16 +0.1
1,855,600 + LRK54_RS08505 0.16 -0.2
1,855,601 - LRK54_RS08505 0.16 +0.7
1,855,601 - LRK54_RS08505 0.16 +0.4
1,855,601 - LRK54_RS08505 0.16 -1.3
1,855,601 - LRK54_RS08505 0.16 +1.7
1,855,601 - LRK54_RS08505 0.16 +0.2
1,855,601 - LRK54_RS08505 0.16 +0.2
1,855,601 - LRK54_RS08505 0.16 -0.4
1,855,601 - LRK54_RS08505 0.16 +0.9
1,855,601 - LRK54_RS08505 0.16 +0.7
1,855,601 - LRK54_RS08505 0.16 +0.6
1,855,601 - LRK54_RS08505 0.16 +0.6
1,855,601 - LRK54_RS08505 0.16 -0.6
1,855,601 - LRK54_RS08505 0.16 +0.1
1,855,601 - LRK54_RS08505 0.16 +0.2
1,855,601 - LRK54_RS08505 0.16 +0.5
1,855,601 - LRK54_RS08505 0.16 +0.6
1,855,601 - LRK54_RS08505 0.16 +1.2
1,855,601 - LRK54_RS08505 0.16 -0.2
1,855,601 - LRK54_RS08505 0.16 +0.4
1,855,601 - LRK54_RS08505 0.16 +0.1
1,855,601 - LRK54_RS08505 0.16 +0.6
1,855,601 - LRK54_RS08505 0.16 +0.3
1,855,601 - LRK54_RS08505 0.16 -0.3
1,855,602 + LRK54_RS08505 0.16 +2.7
1,855,602 + LRK54_RS08505 0.16 +0.2
1,855,602 + LRK54_RS08505 0.16 +0.7
1,855,603 - LRK54_RS08505 0.17 +0.7
1,855,603 - LRK54_RS08505 0.17 +0.3
1,855,887 + LRK54_RS08505 0.38 +0.7
1,855,887 + LRK54_RS08505 0.38 +0.3
1,855,887 + LRK54_RS08505 0.38 +0.5
1,855,887 + LRK54_RS08505 0.38 +1.3
1,855,888 - LRK54_RS08505 0.38 -0.8
1,855,888 - LRK54_RS08505 0.38 +0.3
1,856,668 + -0.1
1,856,668 + -0.5
1,856,668 + -0.2
1,856,668 + +0.4
1,856,668 + +0.8
1,856,668 + +0.1
1,856,668 + +1.7
1,856,668 + +0.8
1,856,668 + +1.7
1,856,668 + -0.1
1,856,668 + -0.0
1,856,668 + +0.3
1,856,668 + +1.2
1,856,668 + +0.3
1,856,668 + -0.7
1,856,669 - -1.3
1,856,669 - -0.2
1,856,669 - +0.9
1,856,669 - +0.3
1,856,669 - -0.4
1,856,669 - +0.9
1,856,669 - -0.0
1,856,669 - +0.3
1,856,714 + +0.4
1,856,714 + -0.7
1,856,714 + +1.1
1,856,714 + -0.3
1,856,714 + -0.3
1,856,714 + -0.1
1,856,714 + -0.0
1,856,714 + -0.3
1,856,714 + -0.0
1,856,714 + +0.6
1,856,715 - +0.1
1,856,715 - +0.6
1,856,715 - +0.0
1,856,715 - +0.4
1,856,715 - +0.8
1,856,715 - +0.0
1,856,715 - +0.5
1,856,834 + LRK54_RS08510 0.12 -0.3
1,856,834 + LRK54_RS08510 0.12 +0.6
1,856,835 - LRK54_RS08510 0.12 +1.3
1,856,835 - LRK54_RS08510 0.12 +1.0
1,857,087 + LRK54_RS08510 0.40 -0.4
1,857,087 + LRK54_RS08510 0.40 +0.1
1,857,087 + LRK54_RS08510 0.40 +0.4
1,857,087 + LRK54_RS08510 0.40 +0.1
1,857,087 + LRK54_RS08510 0.40 +0.0
1,857,087 + LRK54_RS08510 0.40 -0.1
1,857,087 + LRK54_RS08510 0.40 +0.0
1,857,087 + LRK54_RS08510 0.40 +1.5
1,857,088 - LRK54_RS08510 0.40 +0.6
1,857,088 - LRK54_RS08510 0.40 -0.2
1,857,088 - LRK54_RS08510 0.40 +0.2
1,857,088 - LRK54_RS08510 0.40 -1.1
1,857,088 - LRK54_RS08510 0.40 -0.6
1,857,088 - LRK54_RS08510 0.40 -1.0
1,857,215 + LRK54_RS08510 0.55 -0.6
1,857,215 + LRK54_RS08510 0.55 -0.6
1,857,215 + LRK54_RS08510 0.55 +0.2
1,857,215 + LRK54_RS08510 0.55 +0.1
1,857,215 + LRK54_RS08510 0.55 -0.5
1,857,215 + LRK54_RS08510 0.55 +0.2
1,857,215 + LRK54_RS08510 0.55 +0.1
1,857,215 + LRK54_RS08510 0.55 +0.8
1,857,215 + LRK54_RS08510 0.55 -0.1
1,857,216 - LRK54_RS08510 0.55 -0.5
1,857,216 - LRK54_RS08510 0.55 +0.3
1,857,216 - LRK54_RS08510 0.55 -0.2
1,857,216 - LRK54_RS08510 0.55 -1.0
1,857,216 - LRK54_RS08510 0.55 -0.4
1,857,216 - LRK54_RS08510 0.55 +0.2
1,857,216 - LRK54_RS08510 0.55 -0.8
1,857,216 - LRK54_RS08510 0.55 -0.5
1,857,216 - LRK54_RS08510 0.55 +0.1
1,857,216 - LRK54_RS08510 0.55 -1.7
1,857,216 - LRK54_RS08510 0.55 -0.6
1,857,216 - LRK54_RS08510 0.55 -0.8
1,857,216 - LRK54_RS08510 0.55 -0.0
1,857,655 + -0.5
1,857,655 + -0.1
1,857,655 + +0.1
1,857,655 + -0.1
1,857,655 + -0.3
1,857,656 - +0.0
1,857,656 - -0.8
1,857,656 - +0.2
1,857,667 + +0.4
1,857,667 + -0.5
1,857,668 - -0.0
1,857,668 - -0.3
1,857,668 - +1.2

Or see this region's nucleotide sequence