Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07675

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,665,321	+				+0.1
1,665,321	+				-0.6
1,665,321	+				-0.5
1,665,321	+				-0.5
1,665,321	+				+0.2
1,665,322	-				-0.9
1,665,322	-				+0.9
1,665,322	-				-0.4
1,665,322	-				-0.4
1,665,322	-				+0.3
1,665,322	-				+0.5
1,665,322	-				+0.4
1,665,322	-				-0.6
1,665,546	+				+0.1
1,665,547	-				-1.0
1,665,547	-				+0.2
1,665,547	-				+0.3
1,665,547	-				+0.9
1,665,712	+				-0.8
1,665,712	+				-1.8
1,665,712	+				-1.8
1,665,712	+				-0.2
1,665,712	+				-0.2
1,665,712	+				-0.3
1,665,712	+				-0.8
1,665,712	+				+0.5
1,665,712	+				-1.2
1,665,712	+				+0.2
1,665,712	+				-0.7
1,665,712	+				+2.4
1,665,713	-				-0.3
1,665,713	-				+0.1
1,665,713	-				-0.6
1,665,713	-				+0.6
1,665,713	-				-1.0
1,665,713	-				+0.8
1,665,713	-				-1.0
1,665,713	-				-1.2
1,665,713	-				-1.9
1,665,713	-				-0.3
1,665,713	-				-0.3
1,665,713	-				-0.5
1,665,771	+				-0.9
1,665,772	-				-1.1
1,665,917	+				+0.0
1,665,917	+				-0.9
1,665,917	+				-1.2
1,665,917	+				-0.2
1,665,917	+				-1.0
1,665,917	+				-0.2
1,665,917	+				+0.3
1,665,917	+				-0.6
1,665,918	-				-1.1
1,665,918	-				-1.3
1,665,918	-				-0.6
1,665,918	-				+0.5
1,665,918	-				-0.3
1,665,918	-				+0.2
1,665,918	-				-1.4
1,665,918	-				-0.4
1,665,996	-				-0.1
1,665,996	-				+0.5
1,665,996	-				+0.9
1,665,996	-				-0.3
1,665,996	-				-0.6
1,666,029	+		LRK54_RS07670	0.15	-0.1
1,666,029	+		LRK54_RS07670	0.15	-0.0
1,666,029	+		LRK54_RS07670	0.15	+0.0
1,666,029	+		LRK54_RS07670	0.15	-0.3
1,666,029	+		LRK54_RS07670	0.15	+0.4
1,666,029	+		LRK54_RS07670	0.15	-0.4
1,666,030	-		LRK54_RS07670	0.16	-0.6
1,666,030	-		LRK54_RS07670	0.16	+0.0
1,666,030	-		LRK54_RS07670	0.16	-1.2
1,666,030	-		LRK54_RS07670	0.16	+1.3
1,666,038	+		LRK54_RS07670	0.20	-0.3
1,666,081	+		LRK54_RS07670	0.45	+0.9
1,666,081	+		LRK54_RS07670	0.45	-0.3
1,666,081	+		LRK54_RS07670	0.45	+0.1
1,666,081	+		LRK54_RS07670	0.45	+0.1
1,666,081	+		LRK54_RS07670	0.45	+0.0
1,666,081	+		LRK54_RS07670	0.45	-0.3
1,666,081	+		LRK54_RS07670	0.45	-0.5
1,666,082	-		LRK54_RS07670	0.45	-0.4
1,666,082	-		LRK54_RS07670	0.45	-1.3
1,666,082	-		LRK54_RS07670	0.45	-0.9
1,666,082	-		LRK54_RS07670	0.45	+1.1
1,666,082	-		LRK54_RS07670	0.45	-0.8
1,666,082	-		LRK54_RS07670	0.45	-0.3
1,666,082	-		LRK54_RS07670	0.45	-1.3
1,666,082	-		LRK54_RS07670	0.45	+0.9
1,666,082	-		LRK54_RS07670	0.45	+0.1
1,666,087	+		LRK54_RS07670	0.48	-0.8
1,666,087	+		LRK54_RS07670	0.48	-0.4
1,666,087	+		LRK54_RS07670	0.48	-1.1
1,666,087	+		LRK54_RS07670	0.48	+0.2
1,666,087	+		LRK54_RS07670	0.48	-1.1
1,666,178	+				-1.2
1,666,178	+				-0.9
1,666,179	-				+1.2
1,666,179	-				+0.0
1,666,179	-				-0.2
1,666,192	+				-0.9
1,666,196	+				-0.6
1,666,197	-				+0.3
1,666,230	+				-0.2
1,666,230	+				+1.1
1,666,230	+				-1.3
1,666,231	-				-0.6
1,666,231	-				-0.8
1,666,297	+				-0.7
1,666,298	-				-0.7
1,666,298	-				-1.0
1,666,299	+				-0.0
1,666,300	-				-1.0
1,666,326	-				+0.6
1,666,326	-				-0.1
1,666,363	+		LRK54_RS07675	0.21	-1.1
1,666,364	-		LRK54_RS07675	0.21	-0.2
1,666,395	-		LRK54_RS07675	0.30	-1.3
1,666,395	-		LRK54_RS07675	0.30	-0.3
1,666,406	-		LRK54_RS07675	0.33	-0.9
1,666,416	-		LRK54_RS07675	0.36	-1.0
1,666,460	+		LRK54_RS07675	0.49	-1.6
1,666,460	+		LRK54_RS07675	0.49	-1.9
1,666,486	-		LRK54_RS07675	0.57	-1.5
1,666,605	+				-0.6
1,666,605	+				-0.1
1,666,627	-				-0.9
1,666,729	+		LRK54_RS07680	0.41	-0.9
1,666,729	+		LRK54_RS07680	0.41	-0.5
1,666,729	+		LRK54_RS07680	0.41	+1.7
1,666,729	+		LRK54_RS07680	0.41	-0.8
1,666,745	+		LRK54_RS07680	0.47	-0.8
1,666,745	+		LRK54_RS07680	0.47	-1.4
1,666,745	+		LRK54_RS07680	0.47	+0.2
1,666,745	+		LRK54_RS07680	0.47	-0.5
1,666,745	+		LRK54_RS07680	0.47	+0.4
1,666,745	+		LRK54_RS07680	0.47	-1.6
1,666,745	+		LRK54_RS07680	0.47	-1.0
1,666,745	+		LRK54_RS07680	0.47	-0.0
1,666,745	+		LRK54_RS07680	0.47	+0.7
1,666,746	-		LRK54_RS07680	0.48	-0.9
1,666,746	-		LRK54_RS07680	0.48	-2.5
1,666,746	-		LRK54_RS07680	0.48	-0.1
1,666,746	-		LRK54_RS07680	0.48	-0.0
1,666,776	+		LRK54_RS07680	0.60	-1.0
1,666,776	+		LRK54_RS07680	0.60	-0.4
1,666,777	-		LRK54_RS07680	0.60	-0.3
1,666,777	-		LRK54_RS07680	0.60	+1.6
1,666,777	-		LRK54_RS07680	0.60	+0.0
1,666,800	+		LRK54_RS07680	0.70	-0.0
1,666,800	+		LRK54_RS07680	0.70	-0.2
1,666,801	-		LRK54_RS07680	0.70	+0.7
1,666,801	-		LRK54_RS07680	0.70	-0.3
1,666,801	-		LRK54_RS07680	0.70	+0.5
1,666,801	-		LRK54_RS07680	0.70	+0.1
1,666,801	-		LRK54_RS07680	0.70	-2.0
1,666,801	-		LRK54_RS07680	0.70	-0.5
1,666,804	+		LRK54_RS07680	0.72	-0.3
1,666,804	+		LRK54_RS07680	0.72	-2.2
1,666,804	+		LRK54_RS07680	0.72	-1.9
1,666,804	+		LRK54_RS07680	0.72	+0.9
1,666,804	+		LRK54_RS07680	0.72	-0.7
1,666,804	+		LRK54_RS07680	0.72	-0.3
1,666,805	-		LRK54_RS07680	0.72	+0.6
1,666,805	-		LRK54_RS07680	0.72	-1.0
1,666,819	+		LRK54_RS07680	0.78	+0.1
1,666,819	+		LRK54_RS07680	0.78	-0.8
1,666,819	+		LRK54_RS07680	0.78	-0.1
1,666,820	-		LRK54_RS07680	0.78	-0.4
1,666,820	-		LRK54_RS07680	0.78	-1.9
1,666,841	+		LRK54_RS07680	0.87	+1.8
1,666,841	+		LRK54_RS07680	0.87	+0.4
1,666,841	+		LRK54_RS07680	0.87	-0.9
1,666,842	-		LRK54_RS07680	0.87	+1.4
1,666,842	-		LRK54_RS07680	0.87	-0.6
1,666,842	-		LRK54_RS07680	0.87	+0.5
1,666,845	+		LRK54_RS07680	0.88	-1.0
1,666,845	+		LRK54_RS07680	0.88	-0.1
1,666,845	+		LRK54_RS07680	0.88	-1.0
1,666,846	-		LRK54_RS07680	0.89	-0.5
1,666,846	-		LRK54_RS07680	0.89	+0.0
1,666,846	-		LRK54_RS07680	0.89	-0.2
1,666,864	+				-0.2
1,666,864	+				-1.1
1,666,864	+				+0.0
1,666,864	+				-0.0
1,666,864	+				-0.6
1,666,864	+				-0.6
1,666,864	+				+0.7
1,666,864	+				-0.3
1,666,864	+				-1.8
1,666,864	+				-0.4
1,666,865	-				-0.7
1,666,865	-				-2.0
1,666,865	-				-0.4
1,666,905	-				-0.5
1,666,905	-				-0.0
1,666,921	-				+0.8
1,666,925	+				-0.0
1,666,926	-				-0.7
1,666,926	-				-0.1
1,666,926	-				+0.5
1,666,928	+				-2.0
1,666,928	+				-0.2
1,666,928	+				-0.3
1,666,928	+				-0.1
1,666,928	+				-1.3
1,666,929	-				-0.2
1,666,929	-				+0.9
1,666,938	+				+0.8
1,666,938	+				-0.4
1,666,938	+				-0.7
1,666,938	+				+0.8
1,666,938	+				+0.1
1,666,938	+				-0.0
1,666,938	+				-1.4
1,666,938	+				-0.4
1,666,938	+				-1.2
1,666,938	+				-0.9
1,666,938	+				+0.4
1,666,938	+				-0.7
1,666,939	-				-0.5
1,666,939	-				-1.5
1,666,939	-				-1.2
1,666,939	-				+0.4
1,666,939	-				+0.3
1,666,939	-				+0.3
1,666,939	-				-0.8
1,666,939	-				+0.1
1,666,939	-				-1.0
1,666,939	-				-1.6
1,666,939	-				-1.5
1,666,939	-				-0.3
1,666,939	-				-0.3
1,666,939	-				-0.4
1,666,939	-				-1.2
1,666,942	+				-0.4
1,666,942	+				-0.4
1,666,942	+				+0.7
1,666,942	+				-0.7
1,666,942	+				-0.2
1,666,943	-				-0.5
1,666,943	-				-0.9
1,666,967	+				-1.1
1,666,967	+				-0.2
1,666,967	+				-0.5
1,666,967	+				+0.2
1,666,967	+				-0.5
1,666,967	+				-1.1
1,666,967	+				+0.2
1,666,968	-				-0.6
1,666,971	+				+0.2
1,666,971	+				-0.6
1,666,971	+				-0.3
1,666,971	+				-0.7
1,666,971	+				-1.7
1,666,972	-				-0.6
1,666,972	-				-0.4
1,666,972	-				-0.2
1,666,972	-				-0.9
1,666,972	-				-0.4
1,666,972	-				-0.9
1,666,972	-				-0.1
1,667,024	+				-0.6
1,667,024	+				-0.6
1,667,050	-				-0.2
1,667,050	-				-0.9
1,667,050	-				-0.8
1,667,050	-				-0.6
1,667,057	+				-0.4
1,667,058	-				+0.5
1,667,058	-				-0.5
1,667,058	-				-1.0
1,667,058	-				-1.5
1,667,106	+		LRK54_RS07685	0.13	+1.1
1,667,106	+		LRK54_RS07685	0.13	-2.0
1,667,106	+		LRK54_RS07685	0.13	-0.5
1,667,106	+		LRK54_RS07685	0.13	-2.8
1,667,106	+		LRK54_RS07685	0.13	-0.3
1,667,106	+		LRK54_RS07685	0.13	-0.6
1,667,107	-		LRK54_RS07685	0.14	-2.3
1,667,107	-		LRK54_RS07685	0.14	-0.6
1,667,107	-		LRK54_RS07685	0.14	-0.7
1,667,151	+		LRK54_RS07685	0.24	+1.5
1,667,151	+		LRK54_RS07685	0.24	-1.0
1,667,152	-		LRK54_RS07685	0.24	-1.1
1,667,152	-		LRK54_RS07685	0.24	+0.3
1,667,202	+		LRK54_RS07685	0.36	-0.6
1,667,202	+		LRK54_RS07685	0.36	-1.1
1,667,202	+		LRK54_RS07685	0.36	-0.2
1,667,202	+		LRK54_RS07685	0.36	-1.2
1,667,203	-		LRK54_RS07685	0.36	-0.5
1,667,203	-		LRK54_RS07685	0.36	-1.1
1,667,288	+		LRK54_RS07685	0.56	+0.8
1,667,288	+		LRK54_RS07685	0.56	-1.1
1,667,288	+		LRK54_RS07685	0.56	-0.7
1,667,289	-		LRK54_RS07685	0.56	-0.9
1,667,289	-		LRK54_RS07685	0.56	+0.2
1,667,289	-		LRK54_RS07685	0.56	-0.1
1,667,289	-		LRK54_RS07685	0.56	-0.8
1,667,289	-		LRK54_RS07685	0.56	+0.1
1,667,311	+		LRK54_RS07685	0.61	+1.1
1,667,312	-		LRK54_RS07685	0.61	+0.1
1,667,312	-		LRK54_RS07685	0.61	-0.4
1,667,312	-		LRK54_RS07685	0.61	+0.1
1,667,362	+		LRK54_RS07685	0.73	-0.4
1,667,363	-		LRK54_RS07685	0.73	-0.1
1,667,363	-		LRK54_RS07685	0.73	+0.7
1,667,389	+		LRK54_RS07685	0.79	-1.5
1,667,389	+		LRK54_RS07685	0.79	+0.1
1,667,390	-		LRK54_RS07685	0.80	-0.5
1,667,390	-		LRK54_RS07685	0.80	-0.8
1,667,390	-		LRK54_RS07685	0.80	-0.5
1,667,390	-		LRK54_RS07685	0.80	-0.8
1,667,390	-		LRK54_RS07685	0.80	-0.7
1,667,396	+		LRK54_RS07685	0.81	-0.6
1,667,396	+		LRK54_RS07685	0.81	-2.3
1,667,396	+		LRK54_RS07685	0.81	-0.8
1,667,396	+		LRK54_RS07685	0.81	-0.9
1,667,397	-		LRK54_RS07685	0.81	-0.5
1,667,397	-		LRK54_RS07685	0.81	-0.4
1,667,397	-		LRK54_RS07685	0.81	-0.1
1,667,397	-		LRK54_RS07685	0.81	-0.5
1,667,397	-		LRK54_RS07685	0.81	-1.0
1,667,458	-				-0.5
1,667,467	+				-0.5
1,667,541	-				+1.0
1,667,555	+				-1.4
1,667,556	-				+1.7
1,667,556	-				-0.0
1,667,556	-				-2.8
1,667,556	-				+0.6
1,667,556	-				-1.0
1,667,596	+				-0.5
1,667,596	+				-1.2
1,667,596	+				-0.6