Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06235

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,334,556	+		LRK54_RS06230	0.53	-2.7
1,334,556	+		LRK54_RS06230	0.53	+0.2
1,334,556	+		LRK54_RS06230	0.53	-1.1
1,334,556	+		LRK54_RS06230	0.53	-0.8
1,334,556	+		LRK54_RS06230	0.53	-0.1
1,334,556	+		LRK54_RS06230	0.53	-1.4
1,334,556	+		LRK54_RS06230	0.53	+0.3
1,334,557	-		LRK54_RS06230	0.53	+0.9
1,334,557	-		LRK54_RS06230	0.53	-0.2
1,334,557	-		LRK54_RS06230	0.53	+0.5
1,334,557	-		LRK54_RS06230	0.53	+0.8
1,334,557	-		LRK54_RS06230	0.53	-0.5
1,334,557	-		LRK54_RS06230	0.53	+0.0
1,334,557	-		LRK54_RS06230	0.53	-0.7
1,334,557	-		LRK54_RS06230	0.53	-0.2
1,334,557	-		LRK54_RS06230	0.53	+0.4
1,334,557	-		LRK54_RS06230	0.53	-0.5
1,334,558	-		LRK54_RS06230	0.53	+0.4
1,334,604	+		LRK54_RS06230	0.56	-0.0
1,334,605	-		LRK54_RS06230	0.56	+0.3
1,334,605	-		LRK54_RS06230	0.56	-0.9
1,334,781	+		LRK54_RS06230	0.66	-0.6
1,334,781	+		LRK54_RS06230	0.66	+0.0
1,334,781	+		LRK54_RS06230	0.66	-0.6
1,334,781	+		LRK54_RS06230	0.66	-0.9
1,334,781	+		LRK54_RS06230	0.66	+1.2
1,334,781	+		LRK54_RS06230	0.66	-0.4
1,334,782	-		LRK54_RS06230	0.67	-0.3
1,334,782	-		LRK54_RS06230	0.67	-0.2
1,334,782	-		LRK54_RS06230	0.67	+0.0
1,334,782	-		LRK54_RS06230	0.67	+0.4
1,334,782	-		LRK54_RS06230	0.67	+0.2
1,334,784	+		LRK54_RS06230	0.67	+0.3
1,334,784	+		LRK54_RS06230	0.67	+0.5
1,334,784	+		LRK54_RS06230	0.67	+1.6
1,334,785	-		LRK54_RS06230	0.67	+0.0
1,334,785	-		LRK54_RS06230	0.67	+1.0
1,334,785	-		LRK54_RS06230	0.67	+1.2
1,334,938	-		LRK54_RS06230	0.76	+0.0
1,334,938	-		LRK54_RS06230	0.76	+0.1
1,335,060	+		LRK54_RS06230	0.83	-0.2
1,335,060	+		LRK54_RS06230	0.83	-0.7
1,335,060	+		LRK54_RS06230	0.83	-0.4
1,335,060	+		LRK54_RS06230	0.83	-0.1
1,335,060	+		LRK54_RS06230	0.83	+0.2
1,335,060	+		LRK54_RS06230	0.83	-0.2
1,335,060	+		LRK54_RS06230	0.83	+0.1
1,335,060	+		LRK54_RS06230	0.83	+0.6
1,335,060	+		LRK54_RS06230	0.83	-0.4
1,335,060	+		LRK54_RS06230	0.83	+0.5
1,335,060	+		LRK54_RS06230	0.83	-0.6
1,335,060	+		LRK54_RS06230	0.83	+0.7
1,335,060	+		LRK54_RS06230	0.83	-1.5
1,335,060	+		LRK54_RS06230	0.83	+0.1
1,335,060	+		LRK54_RS06230	0.83	+0.5
1,335,060	+		LRK54_RS06230	0.83	-0.2
1,335,060	+		LRK54_RS06230	0.83	-1.3
1,335,060	+		LRK54_RS06230	0.83	+0.7
1,335,060	+		LRK54_RS06230	0.83	+1.0
1,335,061	-		LRK54_RS06230	0.84	+0.3
1,335,061	-		LRK54_RS06230	0.84	+0.1
1,335,061	-		LRK54_RS06230	0.84	-0.5
1,335,061	-		LRK54_RS06230	0.84	+0.5
1,335,061	-		LRK54_RS06230	0.84	+1.5
1,335,061	-		LRK54_RS06230	0.84	+0.1
1,335,061	-		LRK54_RS06230	0.84	-1.6
1,335,061	-		LRK54_RS06230	0.84	-0.6
1,335,061	-		LRK54_RS06230	0.84	-0.2
1,335,165	+		LRK54_RS06230	0.90	-0.0
1,335,165	+		LRK54_RS06230	0.90	-0.1
1,335,165	+		LRK54_RS06230	0.90	+0.2
1,335,165	+		LRK54_RS06230	0.90	+0.4
1,335,165	+		LRK54_RS06230	0.90	-0.6
1,335,166	-		LRK54_RS06230	0.90	-0.6
1,335,166	-		LRK54_RS06230	0.90	-2.6
1,335,166	-		LRK54_RS06230	0.90	+1.3
1,335,166	-		LRK54_RS06230	0.90	+0.2
1,335,166	-		LRK54_RS06230	0.90	-0.2
1,335,166	-		LRK54_RS06230	0.90	+0.4
1,335,166	-		LRK54_RS06230	0.90	+0.1
1,335,166	-		LRK54_RS06230	0.90	+0.5
1,335,166	-		LRK54_RS06230	0.90	+1.4
1,335,405	+				-0.3
1,335,405	+				-0.6
1,335,405	+				-0.4
1,335,405	+				-0.7
1,335,405	+				-0.6
1,335,405	+				+1.3
1,335,405	+				-1.5
1,335,405	+				-1.1
1,335,405	+				+0.8
1,335,405	+				-0.3
1,335,406	-				+0.7
1,335,406	-				-0.5
1,335,406	-				-0.1
1,335,406	-				+0.0
1,335,406	-				-0.9
1,335,406	-				-1.1
1,335,406	-				-0.0
1,335,406	-				-0.3
1,335,466	+				-0.5
1,335,466	+				-0.0
1,335,466	+				+0.8
1,335,467	-				-0.9
1,335,467	-				-0.5
1,335,467	-				-0.6
1,335,467	-				-1.1
1,335,467	-				+0.2
1,335,467	-				-0.1
1,335,467	-				-0.0
1,335,467	-				+1.1
1,335,467	-				-0.5
1,335,467	-				-0.9
1,335,724	+		LRK54_RS06235	0.26	+2.3
1,335,724	+		LRK54_RS06235	0.26	+0.8
1,335,724	+		LRK54_RS06235	0.26	-0.1
1,335,787	+		LRK54_RS06235	0.36	+0.4
1,335,787	+		LRK54_RS06235	0.36	-0.3
1,335,787	+		LRK54_RS06235	0.36	-0.2
1,335,787	+		LRK54_RS06235	0.36	-0.1
1,335,787	+		LRK54_RS06235	0.36	-0.8
1,335,788	-		LRK54_RS06235	0.36	+0.1
1,335,788	-		LRK54_RS06235	0.36	+0.0
1,335,788	-		LRK54_RS06235	0.36	+0.4
1,335,788	-		LRK54_RS06235	0.36	+0.3
1,335,901	+		LRK54_RS06235	0.53	+0.6
1,335,901	+		LRK54_RS06235	0.53	-1.4
1,335,901	+		LRK54_RS06235	0.53	+0.2
1,335,901	+		LRK54_RS06235	0.53	+0.6
1,335,901	+		LRK54_RS06235	0.53	+0.5
1,335,901	+		LRK54_RS06235	0.53	+0.5
1,335,901	+		LRK54_RS06235	0.53	+0.1
1,335,902	-		LRK54_RS06235	0.53	+1.6
1,335,902	-		LRK54_RS06235	0.53	+0.2
1,335,902	-		LRK54_RS06235	0.53	+0.6
1,335,902	-		LRK54_RS06235	0.53	-0.1
1,335,902	-		LRK54_RS06235	0.53	+0.5
1,335,902	-		LRK54_RS06235	0.53	-2.1
1,335,902	-		LRK54_RS06235	0.53	+0.7
1,335,902	-		LRK54_RS06235	0.53	-0.3
1,335,902	-		LRK54_RS06235	0.53	+0.1
1,335,902	-		LRK54_RS06235	0.53	-0.3
1,335,902	-		LRK54_RS06235	0.53	-1.2
1,335,902	-		LRK54_RS06235	0.53	-0.5
1,335,919	+		LRK54_RS06235	0.56	-0.1
1,335,919	+		LRK54_RS06235	0.56	-0.0
1,335,920	-		LRK54_RS06235	0.56	-0.6
1,336,000	+		LRK54_RS06235	0.68	-0.7
1,336,000	+		LRK54_RS06235	0.68	-0.3
1,336,000	+		LRK54_RS06235	0.68	+0.2
1,336,000	+		LRK54_RS06235	0.68	+0.5
1,336,000	+		LRK54_RS06235	0.68	+0.7
1,336,000	+		LRK54_RS06235	0.68	-0.3
1,336,000	+		LRK54_RS06235	0.68	+0.2
1,336,000	+		LRK54_RS06235	0.68	+0.6
1,336,001	-		LRK54_RS06235	0.68	+0.4
1,336,001	-		LRK54_RS06235	0.68	+0.0
1,336,001	-		LRK54_RS06235	0.68	-0.2
1,336,001	-		LRK54_RS06235	0.68	+0.2
1,336,001	-		LRK54_RS06235	0.68	-0.5
1,336,001	-		LRK54_RS06235	0.68	+1.7
1,336,048	+				+0.5
1,336,048	+		LRK54_RS06235	0.75	+1.9
1,336,048	+		LRK54_RS06235	0.75	-0.5
1,336,048	+		LRK54_RS06235	0.75	+0.6
1,336,048	+		LRK54_RS06235	0.75	+0.5
1,336,048	+		LRK54_RS06235	0.75	+1.1
1,336,048	+		LRK54_RS06235	0.75	-0.2
1,336,049	-		LRK54_RS06235	0.75	-0.8
1,336,049	-		LRK54_RS06235	0.75	-1.1
1,336,049	-		LRK54_RS06235	0.75	+2.3
1,336,049	-		LRK54_RS06235	0.75	-0.4
1,336,049	-		LRK54_RS06235	0.75	-0.2
1,336,049	-		LRK54_RS06235	0.75	+0.2
1,336,049	-		LRK54_RS06235	0.75	-1.2
1,336,049	-		LRK54_RS06235	0.75	+0.8
1,336,049	-		LRK54_RS06235	0.75	-0.5
1,336,114	+		LRK54_RS06235	0.85	+0.4
1,336,114	+		LRK54_RS06235	0.85	+0.3
1,336,114	+		LRK54_RS06235	0.85	+0.0
1,336,114	+		LRK54_RS06235	0.85	+1.4
1,336,114	+		LRK54_RS06235	0.85	-0.3
1,336,114	+		LRK54_RS06235	0.85	+1.8
1,336,114	+		LRK54_RS06235	0.85	-0.3
1,336,115	-		LRK54_RS06235	0.85	+0.5
1,336,115	-		LRK54_RS06235	0.85	+0.8
1,336,115	-		LRK54_RS06235	0.85	+0.1
1,336,115	-		LRK54_RS06235	0.85	-0.1
1,336,115	-		LRK54_RS06235	0.85	+0.2
1,336,115	-		LRK54_RS06235	0.85	+1.3
1,336,115	-		LRK54_RS06235	0.85	+1.0
1,336,115	-		LRK54_RS06235	0.85	-0.7
1,336,115	-		LRK54_RS06235	0.85	-1.3
1,336,115	-		LRK54_RS06235	0.85	-0.4
1,336,115	-		LRK54_RS06235	0.85	+0.0
1,336,126	+		LRK54_RS06235	0.87	+0.2
1,336,126	+		LRK54_RS06235	0.87	+0.7
1,336,126	+		LRK54_RS06235	0.87	-1.1
1,336,126	+		LRK54_RS06235	0.87	-1.2
1,336,126	+		LRK54_RS06235	0.87	+0.7
1,336,126	+		LRK54_RS06235	0.87	+1.0
1,336,126	+		LRK54_RS06235	0.87	-0.1
1,336,126	+		LRK54_RS06235	0.87	+0.1
1,336,126	+		LRK54_RS06235	0.87	+0.5
1,336,126	+		LRK54_RS06235	0.87	+0.7
1,336,126	+		LRK54_RS06235	0.87	+1.0
1,336,126	+		LRK54_RS06235	0.87	+0.6
1,336,127	-		LRK54_RS06235	0.87	+1.8
1,336,127	-		LRK54_RS06235	0.87	-0.5
1,336,127	-		LRK54_RS06235	0.87	+0.5
1,336,127	-		LRK54_RS06235	0.87	-0.4
1,336,127	-		LRK54_RS06235	0.87	-0.7
1,336,127	-		LRK54_RS06235	0.87	+0.5
1,336,127	-		LRK54_RS06235	0.87	+0.6
1,336,127	-		LRK54_RS06235	0.87	-0.3
1,336,127	-		LRK54_RS06235	0.87	+0.0
1,336,127	-		LRK54_RS06235	0.87	-0.1
1,336,129	+		LRK54_RS06235	0.87	+0.8
1,336,129	+		LRK54_RS06235	0.87	+0.5
1,336,129	+		LRK54_RS06235	0.87	+1.3
1,336,130	-		LRK54_RS06235	0.87	-1.2
1,336,130	-		LRK54_RS06235	0.87	+0.1
1,336,130	-		LRK54_RS06235	0.87	+0.5
1,336,162	+				+0.2
1,336,162	+				+0.6
1,336,162	+				+0.7
1,336,163	-				+0.6
1,336,402	-		LRK54_RS06240	0.38	-0.4
1,336,402	-		LRK54_RS06240	0.38	+0.1
1,336,516	-		LRK54_RS06240	0.68	+0.8
1,336,617	+				+0.2
1,336,618	-				+0.5
1,336,626	+				-0.8
1,336,626	+				+1.4
1,336,626	+				+0.1
1,336,626	+				-0.6
1,336,626	+				+0.2
1,336,626	+				-0.3
1,336,626	+				+0.8
1,336,626	+				-0.3
1,336,626	+				-0.8
1,336,626	+				+0.4
1,336,626	+				-0.7
1,336,626	+				-0.4
1,336,626	+				+0.0
1,336,627	-				+0.3
1,336,627	-				+0.8
1,336,627	-				-0.7
1,336,627	-				-1.0
1,336,627	-				-0.5
1,336,627	-				+0.2
1,336,627	-				-0.7
1,336,627	-				-0.3
1,336,627	-				-0.4
1,336,627	-				-1.2
1,336,627	-				-0.2
1,336,627	-				-0.2
1,336,627	-				+0.2
1,336,627	-				-1.0
1,336,627	-				-0.4
1,336,630	+				-0.4
1,336,630	+				-0.7
1,336,630	+				-0.3
1,336,630	+				+0.2
1,336,630	+				+0.0
1,336,630	+				+0.1
1,336,630	+				+0.1
1,336,630	+				-0.8
1,336,630	+				+0.7
1,336,630	+				-0.2
1,336,630	+				+0.1
1,336,630	+				-2.1
1,336,630	+				+0.6
1,336,630	+				-0.6
1,336,630	+				-1.3
1,336,630	+				+0.2
1,336,630	+				+0.3
1,336,630	+				-0.4
1,336,630	+				+0.2
1,336,631	-				+2.1
1,336,631	-				-0.7
1,336,631	-				-0.5
1,336,631	-				-0.0
1,336,631	-				-0.4
1,336,631	-				+0.4
1,336,631	-				+0.6
1,336,631	-				+0.2
1,336,631	-				-1.2
1,336,631	-				-0.1
1,336,778	+				+0.1
1,336,778	+				+0.7
1,336,778	+				-0.9
1,336,805	+				-0.7
1,336,805	+				-0.3
1,336,805	+				-0.8
1,336,805	+				-0.2
1,336,805	+				-1.2
1,336,806	-				-0.1
1,336,806	-				+0.2
1,336,806	-				+0.1
1,336,806	-				-0.2
1,336,806	-				-0.3
1,336,806	-				-0.2
1,336,806	-				+2.6
1,336,806	-				-0.5
1,336,838	+				-0.5
1,336,839	-				+0.3
1,336,883	+				+0.1
1,336,883	+				-0.0
1,336,883	+				-0.2
1,336,883	+				-0.3
1,336,883	+				-0.1
1,336,883	+				+0.8
1,336,883	+				-0.6
1,336,884	-				+0.6
1,336,884	-				-1.2
1,336,884	-				-2.0
1,336,925	+				-1.2
1,336,926	-				+0.2
1,336,926	-				-0.5
1,336,970	+				+0.1
1,336,970	+				-0.0
1,336,970	+				-1.3
1,336,970	+				+0.4
1,336,970	+				+0.1
1,336,970	+				-0.5
1,336,970	+				-0.9
1,336,970	+				-0.8
1,336,970	+				-1.2
1,336,970	+				+0.9
1,336,970	+				-0.3
1,336,970	+				+0.0
1,336,970	+				+0.1
1,336,970	+				+0.1
1,336,971	-				+0.6
1,336,971	-				+0.7
1,336,971	-				-0.2
1,336,971	-				+0.1
1,336,971	-				+1.3
1,336,971	-				-0.6
1,336,971	-				+0.4
1,336,971	-				-0.3
1,336,971	-				+0.2
1,336,971	-				-0.7
1,336,971	-				+0.8
1,336,971	-				+0.4
1,336,971	-				+0.7
1,336,971	-				+1.3
1,336,971	-				+1.2
1,336,971	-				-1.1
1,336,971	-				+0.4
1,336,971	-				+0.1
1,336,971	-				-1.2
1,336,971	-				-0.3
1,336,971	-				+0.5
1,336,971	-				+0.1
1,336,971	-				+0.7
1,336,971	-				-1.4
1,336,971	-				+0.3
1,336,971	-				-0.3
1,336,971	-				-0.5
1,336,971	-				-0.1
1,336,971	-				+0.0
1,336,971	-				+0.1
1,336,971	-				-0.5
1,337,063	+		LRK54_RS06245	0.14	+0.6
1,337,063	+		LRK54_RS06245	0.14	+1.1
1,337,063	+		LRK54_RS06245	0.14	+0.1
1,337,063	+		LRK54_RS06245	0.14	-0.5
1,337,063	+		LRK54_RS06245	0.14	+0.6
1,337,063	+		LRK54_RS06245	0.14	-0.2
1,337,063	+		LRK54_RS06245	0.14	+0.2
1,337,063	+		LRK54_RS06245	0.14	+0.2
1,337,063	+		LRK54_RS06245	0.14	-1.1
1,337,063	+		LRK54_RS06245	0.14	+1.5
1,337,064	-		LRK54_RS06245	0.14	+0.0
1,337,064	-		LRK54_RS06245	0.14	-0.7