Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05915

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS05910 and LRK54_RS05915 are separated by 163 nucleotidesLRK54_RS05915 and LRK54_RS05920 are separated by 33 nucleotides LRK54_RS05910: LRK54_RS05910 - DUF5916 domain-containing protein, at 1,274,466 to 1,276,694 _RS05910 LRK54_RS05915: LRK54_RS05915 - hypothetical protein, at 1,276,858 to 1,277,187 _RS05915 LRK54_RS05920: LRK54_RS05920 - tryptophan--tRNA ligase, at 1,277,221 to 1,278,585 _RS05920 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -3 -2 -1 0 1at 1275.859 kb on + strand, within LRK54_RS05910at 1275.859 kb on + strand, within LRK54_RS05910at 1275.859 kb on + strand, within LRK54_RS05910at 1275.859 kb on + strand, within LRK54_RS05910at 1275.859 kb on + strand, within LRK54_RS05910at 1275.859 kb on + strand, within LRK54_RS05910at 1275.859 kb on + strand, within LRK54_RS05910at 1275.859 kb on + strand, within LRK54_RS05910at 1275.859 kb on + strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1275.860 kb on - strand, within LRK54_RS05910at 1276.012 kb on + strand, within LRK54_RS05910at 1276.012 kb on + strand, within LRK54_RS05910at 1276.012 kb on + strand, within LRK54_RS05910at 1276.013 kb on - strand, within LRK54_RS05910at 1276.013 kb on - strand, within LRK54_RS05910at 1276.013 kb on - strand, within LRK54_RS05910at 1276.013 kb on - strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.027 kb on + strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.028 kb on - strand, within LRK54_RS05910at 1276.057 kb on + strand, within LRK54_RS05910at 1276.057 kb on + strand, within LRK54_RS05910at 1276.057 kb on + strand, within LRK54_RS05910at 1276.058 kb on - strand, within LRK54_RS05910at 1276.058 kb on - strand, within LRK54_RS05910at 1276.058 kb on - strand, within LRK54_RS05910at 1276.165 kb on + strand, within LRK54_RS05910at 1276.165 kb on + strand, within LRK54_RS05910at 1276.165 kb on + strand, within LRK54_RS05910at 1276.165 kb on + strand, within LRK54_RS05910at 1276.165 kb on + strand, within LRK54_RS05910at 1276.165 kb on + strand, within LRK54_RS05910at 1276.166 kb on - strand, within LRK54_RS05910at 1276.166 kb on - strand, within LRK54_RS05910at 1276.166 kb on - strand, within LRK54_RS05910at 1276.216 kb on + strand, within LRK54_RS05910at 1276.216 kb on + strand, within LRK54_RS05910at 1276.216 kb on + strand, within LRK54_RS05910at 1276.216 kb on + strand, within LRK54_RS05910at 1276.216 kb on + strand, within LRK54_RS05910at 1276.216 kb on + strand, within LRK54_RS05910at 1276.216 kb on + strand, within LRK54_RS05910at 1276.216 kb on + strand, within LRK54_RS05910at 1276.217 kb on - strand, within LRK54_RS05910at 1276.217 kb on - strand, within LRK54_RS05910at 1276.217 kb on - strand, within LRK54_RS05910at 1276.217 kb on - strand, within LRK54_RS05910at 1276.363 kb on + strand, within LRK54_RS05910at 1276.451 kb on + strand, within LRK54_RS05910at 1276.452 kb on - strand, within LRK54_RS05910at 1276.934 kb on + strand, within LRK54_RS05915at 1276.940 kb on + strand, within LRK54_RS05915at 1276.940 kb on + strand, within LRK54_RS05915at 1276.940 kb on + strand, within LRK54_RS05915at 1276.941 kb on - strand, within LRK54_RS05915at 1276.941 kb on - strand, within LRK54_RS05915at 1276.941 kb on - strand, within LRK54_RS05915at 1276.941 kb on - strand, within LRK54_RS05915at 1276.941 kb on - strand, within LRK54_RS05915at 1276.941 kb on - strand, within LRK54_RS05915at 1276.941 kb on - strand, within LRK54_RS05915at 1277.129 kb on + strand, within LRK54_RS05915at 1277.129 kb on + strand, within LRK54_RS05915at 1277.180 kb on + strandat 1277.180 kb on + strandat 1277.180 kb on + strandat 1277.180 kb on + strandat 1277.181 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,275,859 + LRK54_RS05910 0.62 -0.7
1,275,859 + LRK54_RS05910 0.62 -0.3
1,275,859 + LRK54_RS05910 0.62 -0.9
1,275,859 + LRK54_RS05910 0.62 -0.3
1,275,859 + LRK54_RS05910 0.62 -0.6
1,275,859 + LRK54_RS05910 0.62 +0.1
1,275,859 + LRK54_RS05910 0.62 +0.0
1,275,859 + LRK54_RS05910 0.62 -0.2
1,275,859 + LRK54_RS05910 0.62 +1.2
1,275,860 - LRK54_RS05910 0.63 -0.8
1,275,860 - LRK54_RS05910 0.63 +0.2
1,275,860 - LRK54_RS05910 0.63 +1.3
1,275,860 - LRK54_RS05910 0.63 +0.7
1,275,860 - LRK54_RS05910 0.63 -0.3
1,275,860 - LRK54_RS05910 0.63 +0.2
1,275,860 - LRK54_RS05910 0.63 -0.6
1,275,860 - LRK54_RS05910 0.63 -0.3
1,275,860 - LRK54_RS05910 0.63 +0.2
1,275,860 - LRK54_RS05910 0.63 +1.0
1,275,860 - LRK54_RS05910 0.63 +0.0
1,275,860 - LRK54_RS05910 0.63 -2.9
1,275,860 - LRK54_RS05910 0.63 -1.2
1,275,860 - LRK54_RS05910 0.63 -0.5
1,275,860 - LRK54_RS05910 0.63 -0.8
1,275,860 - LRK54_RS05910 0.63 +0.2
1,275,860 - LRK54_RS05910 0.63 -0.4
1,275,860 - LRK54_RS05910 0.63 +0.1
1,276,012 + LRK54_RS05910 0.69 -0.7
1,276,012 + LRK54_RS05910 0.69 -1.4
1,276,012 + LRK54_RS05910 0.69 -0.3
1,276,013 - LRK54_RS05910 0.69 -0.1
1,276,013 - LRK54_RS05910 0.69 -1.1
1,276,013 - LRK54_RS05910 0.69 -0.4
1,276,013 - LRK54_RS05910 0.69 -0.2
1,276,027 + LRK54_RS05910 0.70 +0.1
1,276,027 + LRK54_RS05910 0.70 -0.3
1,276,027 + LRK54_RS05910 0.70 -1.9
1,276,027 + LRK54_RS05910 0.70 +0.7
1,276,027 + LRK54_RS05910 0.70 -0.3
1,276,027 + LRK54_RS05910 0.70 +0.0
1,276,027 + LRK54_RS05910 0.70 +0.6
1,276,027 + LRK54_RS05910 0.70 -0.3
1,276,027 + LRK54_RS05910 0.70 -0.1
1,276,027 + LRK54_RS05910 0.70 -1.9
1,276,027 + LRK54_RS05910 0.70 +1.2
1,276,027 + LRK54_RS05910 0.70 +0.3
1,276,027 + LRK54_RS05910 0.70 +0.0
1,276,027 + LRK54_RS05910 0.70 -0.1
1,276,027 + LRK54_RS05910 0.70 -1.5
1,276,028 - LRK54_RS05910 0.70 +0.6
1,276,028 - LRK54_RS05910 0.70 -0.1
1,276,028 - LRK54_RS05910 0.70 +0.5
1,276,028 - LRK54_RS05910 0.70 -0.2
1,276,028 - LRK54_RS05910 0.70 +0.6
1,276,028 - LRK54_RS05910 0.70 -0.3
1,276,028 - LRK54_RS05910 0.70 +0.2
1,276,028 - LRK54_RS05910 0.70 +0.5
1,276,028 - LRK54_RS05910 0.70 -0.3
1,276,028 - LRK54_RS05910 0.70 -0.6
1,276,028 - LRK54_RS05910 0.70 -0.7
1,276,057 + LRK54_RS05910 0.71 +0.2
1,276,057 + LRK54_RS05910 0.71 +0.5
1,276,057 + LRK54_RS05910 0.71 -0.2
1,276,058 - LRK54_RS05910 0.71 +0.0
1,276,058 - LRK54_RS05910 0.71 -0.2
1,276,058 - LRK54_RS05910 0.71 -1.2
1,276,165 + LRK54_RS05910 0.76 +0.0
1,276,165 + LRK54_RS05910 0.76 +0.3
1,276,165 + LRK54_RS05910 0.76 +0.1
1,276,165 + LRK54_RS05910 0.76 -0.3
1,276,165 + LRK54_RS05910 0.76 +0.5
1,276,165 + LRK54_RS05910 0.76 -0.2
1,276,166 - LRK54_RS05910 0.76 -0.1
1,276,166 - LRK54_RS05910 0.76 -0.7
1,276,166 - LRK54_RS05910 0.76 -1.0
1,276,216 + LRK54_RS05910 0.79 -0.0
1,276,216 + LRK54_RS05910 0.79 +0.2
1,276,216 + LRK54_RS05910 0.79 -0.1
1,276,216 + LRK54_RS05910 0.79 +1.5
1,276,216 + LRK54_RS05910 0.79 -1.6
1,276,216 + LRK54_RS05910 0.79 +0.6
1,276,216 + LRK54_RS05910 0.79 -0.1
1,276,216 + LRK54_RS05910 0.79 -0.0
1,276,217 - LRK54_RS05910 0.79 -0.4
1,276,217 - LRK54_RS05910 0.79 -0.6
1,276,217 - LRK54_RS05910 0.79 -0.3
1,276,217 - LRK54_RS05910 0.79 -1.0
1,276,363 + LRK54_RS05910 0.85 -0.5
1,276,451 + LRK54_RS05910 0.89 +0.2
1,276,452 - LRK54_RS05910 0.89 -0.2
1,276,934 + LRK54_RS05915 0.23 -1.2
1,276,940 + LRK54_RS05915 0.25 +0.4
1,276,940 + LRK54_RS05915 0.25 +0.5
1,276,940 + LRK54_RS05915 0.25 -0.6
1,276,941 - LRK54_RS05915 0.25 -0.7
1,276,941 - LRK54_RS05915 0.25 +0.3
1,276,941 - LRK54_RS05915 0.25 +0.4
1,276,941 - LRK54_RS05915 0.25 +0.6
1,276,941 - LRK54_RS05915 0.25 -0.1
1,276,941 - LRK54_RS05915 0.25 -0.1
1,276,941 - LRK54_RS05915 0.25 +1.1
1,277,129 + LRK54_RS05915 0.82 +0.4
1,277,129 + LRK54_RS05915 0.82 -1.3
1,277,180 + +0.3
1,277,180 + +0.4
1,277,180 + -1.9
1,277,180 + +0.2
1,277,181 - +0.4

Or see this region's nucleotide sequence