Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05500

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS05490 and LRK54_RS05495 are separated by 694 nucleotidesLRK54_RS05495 and LRK54_RS05500 are separated by 53 nucleotidesLRK54_RS05500 and LRK54_RS05505 are separated by 137 nucleotidesLRK54_RS05505 and LRK54_RS05510 are separated by 91 nucleotides LRK54_RS05490: LRK54_RS05490 - energy transducer TonB, at 1,185,557 to 1,186,585 _RS05490 LRK54_RS05495: LRK54_RS05495 - met regulon transcriptional regulator MetJ, at 1,187,280 to 1,187,507 _RS05495 LRK54_RS05500: LRK54_RS05500 - hypothetical protein, at 1,187,561 to 1,187,980 _RS05500 LRK54_RS05505: LRK54_RS05505 - glycine cleavage system protein GcvH, at 1,188,118 to 1,188,513 _RS05505 LRK54_RS05510: LRK54_RS05510 - glycine cleavage system aminomethyltransferase GcvT, at 1,188,605 to 1,189,705 _RS05510 Position (kb) 1187 1188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1186.561 kb on + strandat 1186.561 kb on + strandat 1186.561 kb on + strandat 1186.561 kb on + strandat 1186.562 kb on - strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.568 kb on + strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.569 kb on - strandat 1186.572 kb on + strandat 1186.572 kb on + strandat 1186.572 kb on + strandat 1186.572 kb on + strandat 1186.572 kb on + strandat 1186.572 kb on + strandat 1186.572 kb on + strandat 1186.572 kb on + strandat 1186.572 kb on + strandat 1186.572 kb on + strandat 1186.572 kb on + strandat 1186.573 kb on - strandat 1186.573 kb on - strandat 1186.573 kb on - strandat 1186.573 kb on - strandat 1186.573 kb on - strandat 1186.573 kb on - strandat 1186.573 kb on - strandat 1186.573 kb on - strandat 1186.573 kb on - strandat 1186.573 kb on - strandat 1186.573 kb on - strandat 1186.611 kb on - strandat 1186.611 kb on - strandat 1186.611 kb on - strandat 1186.686 kb on + strandat 1186.686 kb on + strandat 1186.686 kb on + strandat 1186.686 kb on + strandat 1186.686 kb on + strandat 1186.686 kb on + strandat 1186.686 kb on + strandat 1186.687 kb on - strandat 1186.687 kb on - strandat 1186.687 kb on - strandat 1186.687 kb on - strandat 1186.687 kb on - strandat 1186.687 kb on - strandat 1186.687 kb on - strandat 1186.687 kb on - strandat 1186.687 kb on - strandat 1186.687 kb on - strandat 1186.841 kb on + strandat 1186.841 kb on + strandat 1186.841 kb on + strandat 1186.841 kb on + strandat 1186.842 kb on - strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.947 kb on + strandat 1186.948 kb on - strandat 1186.948 kb on - strandat 1186.948 kb on - strandat 1186.948 kb on - strandat 1186.948 kb on - strandat 1186.948 kb on - strandat 1186.972 kb on + strandat 1186.972 kb on + strandat 1186.972 kb on + strandat 1186.972 kb on + strandat 1186.972 kb on + strandat 1186.972 kb on + strandat 1186.973 kb on - strandat 1186.973 kb on - strandat 1186.973 kb on - strandat 1186.973 kb on - strandat 1186.973 kb on - strandat 1186.973 kb on - strandat 1186.973 kb on - strandat 1186.973 kb on - strandat 1186.973 kb on - strandat 1187.315 kb on + strand, within LRK54_RS05495at 1187.315 kb on + strand, within LRK54_RS05495at 1187.316 kb on - strand, within LRK54_RS05495at 1187.316 kb on - strand, within LRK54_RS05495at 1187.316 kb on - strand, within LRK54_RS05495at 1187.358 kb on - strand, within LRK54_RS05495at 1187.358 kb on - strand, within LRK54_RS05495at 1187.449 kb on - strand, within LRK54_RS05495at 1187.449 kb on - strand, within LRK54_RS05495at 1187.449 kb on - strand, within LRK54_RS05495at 1187.449 kb on - strand, within LRK54_RS05495at 1187.479 kb on + strand, within LRK54_RS05495at 1187.479 kb on + strand, within LRK54_RS05495at 1187.479 kb on + strand, within LRK54_RS05495at 1187.479 kb on + strand, within LRK54_RS05495at 1187.479 kb on + strand, within LRK54_RS05495at 1187.479 kb on + strand, within LRK54_RS05495at 1187.480 kb on - strand, within LRK54_RS05495at 1187.480 kb on - strand, within LRK54_RS05495at 1187.480 kb on - strand, within LRK54_RS05495at 1187.480 kb on - strand, within LRK54_RS05495at 1187.481 kb on - strand, within LRK54_RS05495at 1187.508 kb on - strandat 1187.508 kb on - strandat 1187.540 kb on + strandat 1187.540 kb on + strandat 1187.541 kb on - strandat 1187.664 kb on - strand, within LRK54_RS05500at 1187.726 kb on - strand, within LRK54_RS05500at 1188.149 kb on + strandat 1188.149 kb on + strandat 1188.149 kb on + strandat 1188.150 kb on - strandat 1188.150 kb on - strandat 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.302 kb on + strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.303 kb on - strand, within LRK54_RS05505at 1188.389 kb on + strand, within LRK54_RS05505at 1188.389 kb on + strand, within LRK54_RS05505at 1188.389 kb on + strand, within LRK54_RS05505at 1188.389 kb on + strand, within LRK54_RS05505at 1188.390 kb on - strand, within LRK54_RS05505at 1188.390 kb on - strand, within LRK54_RS05505at 1188.390 kb on - strand, within LRK54_RS05505at 1188.390 kb on - strand, within LRK54_RS05505at 1188.390 kb on - strand, within LRK54_RS05505at 1188.390 kb on - strand, within LRK54_RS05505at 1188.547 kb on - strandat 1188.561 kb on + strandat 1188.561 kb on + strandat 1188.562 kb on - strandat 1188.562 kb on - strandat 1188.562 kb on - strandat 1188.645 kb on + strandat 1188.645 kb on + strandat 1188.645 kb on + strandat 1188.646 kb on - strandat 1188.646 kb on - strandat 1188.716 kb on + strand, within LRK54_RS05510at 1188.716 kb on + strand, within LRK54_RS05510at 1188.716 kb on + strand, within LRK54_RS05510at 1188.716 kb on + strand, within LRK54_RS05510at 1188.716 kb on + strand, within LRK54_RS05510at 1188.717 kb on - strand, within LRK54_RS05510at 1188.717 kb on - strand, within LRK54_RS05510

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,186,561 + -0.1
1,186,561 + -0.9
1,186,561 + -0.4
1,186,561 + -1.6
1,186,562 - -0.8
1,186,568 + -1.8
1,186,568 + -0.8
1,186,568 + +1.3
1,186,568 + -1.2
1,186,568 + +0.1
1,186,568 + -1.3
1,186,568 + -0.7
1,186,568 + -0.9
1,186,568 + +1.3
1,186,568 + -0.5
1,186,568 + -0.4
1,186,568 + -0.3
1,186,568 + -0.2
1,186,568 + -2.6
1,186,568 + -0.8
1,186,568 + -1.7
1,186,568 + +1.3
1,186,568 + -0.3
1,186,568 + -1.0
1,186,568 + -0.7
1,186,568 + -1.7
1,186,568 + -1.8
1,186,568 + -1.8
1,186,568 + -1.0
1,186,568 + -1.0
1,186,568 + -0.9
1,186,568 + -0.5
1,186,568 + +0.6
1,186,568 + -2.3
1,186,568 + -2.0
1,186,568 + -0.8
1,186,568 + -1.6
1,186,568 + -0.7
1,186,568 + -0.8
1,186,568 + -0.5
1,186,568 + -1.0
1,186,568 + -2.5
1,186,568 + +0.1
1,186,568 + -0.1
1,186,568 + -0.8
1,186,568 + -0.5
1,186,568 + -2.2
1,186,568 + -0.9
1,186,568 + -0.6
1,186,568 + +2.3
1,186,568 + -0.8
1,186,568 + +0.4
1,186,568 + -1.4
1,186,568 + -0.2
1,186,568 + -1.5
1,186,569 - +0.6
1,186,569 - -0.3
1,186,569 - -0.9
1,186,569 - -1.3
1,186,569 - -0.4
1,186,569 - -0.1
1,186,569 - -0.2
1,186,569 - -1.0
1,186,569 - -1.3
1,186,569 - -0.4
1,186,569 - +1.9
1,186,569 - +0.4
1,186,569 - -0.2
1,186,569 - +0.1
1,186,569 - -1.4
1,186,569 - -0.7
1,186,569 - -0.6
1,186,569 - -0.7
1,186,569 - +0.2
1,186,569 - -0.8
1,186,569 - -0.3
1,186,569 - -0.5
1,186,569 - +0.2
1,186,569 - +0.6
1,186,569 - -0.7
1,186,569 - -0.7
1,186,569 - -1.2
1,186,569 - -0.1
1,186,569 - +0.1
1,186,569 - -0.4
1,186,569 - -2.6
1,186,569 - +0.9
1,186,569 - -0.7
1,186,569 - +1.2
1,186,569 - +0.4
1,186,569 - -0.4
1,186,569 - -0.9
1,186,569 - -0.5
1,186,569 - -0.4
1,186,569 - -0.8
1,186,569 - -0.6
1,186,569 - +1.0
1,186,569 - -1.6
1,186,569 - -1.7
1,186,569 - -0.4
1,186,569 - -2.5
1,186,569 - -0.9
1,186,569 - -0.8
1,186,569 - -0.6
1,186,569 - +0.2
1,186,569 - -1.7
1,186,569 - -0.5
1,186,569 - +0.1
1,186,569 - +0.5
1,186,572 + -1.7
1,186,572 + -0.5
1,186,572 + -1.0
1,186,572 + -0.2
1,186,572 + -2.5
1,186,572 + -1.3
1,186,572 + -1.0
1,186,572 + -0.8
1,186,572 + -0.5
1,186,572 + -0.6
1,186,572 + -2.1
1,186,573 - -1.0
1,186,573 - -0.6
1,186,573 - -0.9
1,186,573 - -0.4
1,186,573 - -0.2
1,186,573 - -0.6
1,186,573 - -1.2
1,186,573 - -0.2
1,186,573 - -0.6
1,186,573 - -0.4
1,186,573 - +0.4
1,186,611 - +0.1
1,186,611 - +0.2
1,186,611 - -0.7
1,186,686 + -1.0
1,186,686 + -0.4
1,186,686 + -0.6
1,186,686 + -0.7
1,186,686 + +0.3
1,186,686 + -0.5
1,186,686 + -1.1
1,186,687 - -0.3
1,186,687 - -0.0
1,186,687 - -0.2
1,186,687 - +0.4
1,186,687 - -0.6
1,186,687 - -0.4
1,186,687 - -0.9
1,186,687 - +0.5
1,186,687 - +0.2
1,186,687 - -0.3
1,186,841 + -0.5
1,186,841 + -0.6
1,186,841 + +0.1
1,186,841 + +0.1
1,186,842 - -2.0
1,186,947 + +0.1
1,186,947 + -0.1
1,186,947 + +2.1
1,186,947 + -1.7
1,186,947 + -1.8
1,186,947 + -1.9
1,186,947 + -1.6
1,186,947 + -0.9
1,186,947 + -1.6
1,186,947 + -2.5
1,186,947 + -2.3
1,186,947 + -1.7
1,186,948 - -1.4
1,186,948 - -0.1
1,186,948 - -1.1
1,186,948 - +1.3
1,186,948 - -1.1
1,186,948 - -0.3
1,186,972 + -0.6
1,186,972 + -0.1
1,186,972 + -1.6
1,186,972 + -0.3
1,186,972 + -1.4
1,186,972 + -0.5
1,186,973 - -0.8
1,186,973 - -2.0
1,186,973 - -1.3
1,186,973 - -0.1
1,186,973 - -1.2
1,186,973 - -1.3
1,186,973 - -1.1
1,186,973 - -1.0
1,186,973 - -1.2
1,187,315 + LRK54_RS05495 0.15 -0.7
1,187,315 + LRK54_RS05495 0.15 -1.2
1,187,316 - LRK54_RS05495 0.16 -0.7
1,187,316 - LRK54_RS05495 0.16 -2.0
1,187,316 - LRK54_RS05495 0.16 +0.3
1,187,358 - LRK54_RS05495 0.34 -2.4
1,187,358 - LRK54_RS05495 0.34 -1.7
1,187,449 - LRK54_RS05495 0.74 -1.2
1,187,449 - LRK54_RS05495 0.74 -0.2
1,187,449 - LRK54_RS05495 0.74 +0.5
1,187,449 - LRK54_RS05495 0.74 -1.8
1,187,479 + LRK54_RS05495 0.87 -2.9
1,187,479 + LRK54_RS05495 0.87 -1.2
1,187,479 + LRK54_RS05495 0.87 -2.4
1,187,479 + LRK54_RS05495 0.87 -1.1
1,187,479 + LRK54_RS05495 0.87 -0.6
1,187,479 + LRK54_RS05495 0.87 -1.2
1,187,480 - LRK54_RS05495 0.88 -2.2
1,187,480 - LRK54_RS05495 0.88 -0.8
1,187,480 - LRK54_RS05495 0.88 -2.9
1,187,480 - LRK54_RS05495 0.88 -1.6
1,187,481 - LRK54_RS05495 0.88 -1.7
1,187,508 - -3.2
1,187,508 - -1.7
1,187,540 + -2.0
1,187,540 + -2.3
1,187,541 - -0.7
1,187,664 - LRK54_RS05500 0.25 +0.5
1,187,726 - LRK54_RS05500 0.39 +0.2
1,188,149 + -0.7
1,188,149 + +0.5
1,188,149 + -1.0
1,188,150 - -0.4
1,188,150 - +0.7
1,188,302 + LRK54_RS05505 0.46 -0.3
1,188,302 + LRK54_RS05505 0.46 +0.1
1,188,302 + LRK54_RS05505 0.46 -0.8
1,188,302 + LRK54_RS05505 0.46 -0.7
1,188,302 + LRK54_RS05505 0.46 -0.4
1,188,302 + LRK54_RS05505 0.46 -0.1
1,188,302 + LRK54_RS05505 0.46 +1.0
1,188,302 + LRK54_RS05505 0.46 -1.8
1,188,302 + LRK54_RS05505 0.46 +0.0
1,188,302 + LRK54_RS05505 0.46 -0.5
1,188,302 + LRK54_RS05505 0.46 +0.0
1,188,302 + LRK54_RS05505 0.46 -1.0
1,188,302 + LRK54_RS05505 0.46 +0.0
1,188,302 + LRK54_RS05505 0.46 +0.2
1,188,302 + LRK54_RS05505 0.46 -1.5
1,188,302 + LRK54_RS05505 0.46 -0.5
1,188,302 + LRK54_RS05505 0.46 -0.5
1,188,302 + LRK54_RS05505 0.46 -1.0
1,188,303 - LRK54_RS05505 0.47 -0.3
1,188,303 - LRK54_RS05505 0.47 -0.3
1,188,303 - LRK54_RS05505 0.47 +0.0
1,188,303 - LRK54_RS05505 0.47 +1.2
1,188,303 - LRK54_RS05505 0.47 -0.1
1,188,303 - LRK54_RS05505 0.47 -0.3
1,188,303 - LRK54_RS05505 0.47 -0.8
1,188,303 - LRK54_RS05505 0.47 -0.5
1,188,303 - LRK54_RS05505 0.47 -0.2
1,188,303 - LRK54_RS05505 0.47 +0.2
1,188,303 - LRK54_RS05505 0.47 -0.0
1,188,303 - LRK54_RS05505 0.47 +0.3
1,188,303 - LRK54_RS05505 0.47 -1.7
1,188,303 - LRK54_RS05505 0.47 -0.2
1,188,303 - LRK54_RS05505 0.47 +0.8
1,188,303 - LRK54_RS05505 0.47 +1.0
1,188,303 - LRK54_RS05505 0.47 +0.7
1,188,303 - LRK54_RS05505 0.47 -0.6
1,188,389 + LRK54_RS05505 0.68 -0.2
1,188,389 + LRK54_RS05505 0.68 -0.2
1,188,389 + LRK54_RS05505 0.68 -1.1
1,188,389 + LRK54_RS05505 0.68 -0.7
1,188,390 - LRK54_RS05505 0.69 -0.4
1,188,390 - LRK54_RS05505 0.69 -1.0
1,188,390 - LRK54_RS05505 0.69 -0.0
1,188,390 - LRK54_RS05505 0.69 -0.0
1,188,390 - LRK54_RS05505 0.69 -0.5
1,188,390 - LRK54_RS05505 0.69 +0.2
1,188,547 - -0.3
1,188,561 + -1.0
1,188,561 + -0.4
1,188,562 - +0.1
1,188,562 - -0.3
1,188,562 - -1.0
1,188,645 + -2.6
1,188,645 + -0.2
1,188,645 + -1.1
1,188,646 - +0.4
1,188,646 - +0.2
1,188,716 + LRK54_RS05510 0.10 -0.3
1,188,716 + LRK54_RS05510 0.10 +0.7
1,188,716 + LRK54_RS05510 0.10 -0.7
1,188,716 + LRK54_RS05510 0.10 -0.7
1,188,716 + LRK54_RS05510 0.10 -0.3
1,188,717 - LRK54_RS05510 0.10 +1.0
1,188,717 - LRK54_RS05510 0.10 +0.1

Or see this region's nucleotide sequence