Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03690 and LRK54_RS03695 are separated by 51 nucleotides LRK54_RS03695 and LRK54_RS03700 are separated by 49 nucleotides LRK54_RS03700 and LRK54_RS03705 are separated by 52 nucleotides LRK54_RS03705 and LRK54_RS03710 overlap by 4 nucleotides
LRK54_RS03690: LRK54_RS03690 - ribose-phosphate diphosphokinase, at 782,391 to 783,332
_RS03690
LRK54_RS03695: LRK54_RS03695 - tRNA-Gln, at 783,384 to 783,460
_RS03695
LRK54_RS03700: LRK54_RS03700 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 783,510 to 784,892
_RS03700
LRK54_RS03705: LRK54_RS03705 - lipoprotein insertase outer membrane protein LolB, at 784,945 to 785,553
_RS03705
LRK54_RS03710: LRK54_RS03710 - tetratricopeptide repeat protein, at 785,550 to 787,238
_RS03710
Position (kb) 783
784
785 Strain fitness (log2 ratio) -2
-1
0
1
2 at 783.354 kb on - strand at 783.354 kb on - strand at 783.358 kb on - strand at 783.358 kb on - strand at 783.358 kb on - strand at 783.358 kb on - strand at 783.358 kb on - strand at 783.358 kb on - strand at 783.358 kb on - strand at 783.358 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.466 kb on - strand at 783.468 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.474 kb on - strand at 783.498 kb on - strand at 783.498 kb on - strand at 783.498 kb on - strand at 783.498 kb on - strand at 783.498 kb on - strand at 784.502 kb on - strand, within LRK54_RS03700 at 784.502 kb on - strand, within LRK54_RS03700 at 784.622 kb on - strand, within LRK54_RS03700 at 784.622 kb on - strand, within LRK54_RS03700 at 784.622 kb on - strand, within LRK54_RS03700 at 784.622 kb on - strand, within LRK54_RS03700 at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.939 kb on - strand at 785.756 kb on - strand, within LRK54_RS03710 at 785.756 kb on - strand, within LRK54_RS03710 at 785.756 kb on - strand, within LRK54_RS03710 at 785.756 kb on - strand, within LRK54_RS03710 at 785.869 kb on + strand, within LRK54_RS03710 at 785.870 kb on - strand, within LRK54_RS03710 at 785.870 kb on - strand, within LRK54_RS03710 at 785.870 kb on - strand, within LRK54_RS03710
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 783,354 - +0.2 783,354 - +1.9 783,358 - +0.1 783,358 - +0.8 783,358 - +0.3 783,358 - +0.7 783,358 - -0.5 783,358 - -0.3 783,358 - +1.2 783,358 - -0.4 783,466 - -0.2 783,466 - +0.9 783,466 - -0.6 783,466 - +0.4 783,466 - +0.8 783,466 - -0.7 783,466 - -0.5 783,466 - -0.9 783,466 - +0.1 783,466 - +0.2 783,466 - -0.5 783,466 - +0.2 783,466 - +0.1 783,466 - +0.6 783,466 - -0.2 783,466 - -0.4 783,466 - -0.3 783,466 - -0.2 783,466 - -0.1 783,466 - -0.2 783,466 - -0.4 783,466 - +1.9 783,466 - -0.6 783,466 - -0.2 783,466 - -0.3 783,466 - -0.1 783,466 - +0.1 783,466 - -1.1 783,466 - +0.5 783,466 - -0.6 783,466 - +0.1 783,466 - -0.5 783,466 - -1.4 783,466 - +0.8 783,466 - +0.7 783,466 - -0.4 783,466 - -1.6 783,466 - -0.8 783,466 - +1.2 783,466 - +2.1 783,466 - +0.8 783,466 - -0.6 783,466 - +0.3 783,466 - -0.2 783,466 - -0.3 783,466 - +1.1 783,466 - +0.9 783,466 - +0.8 783,466 - -0.1 783,466 - +0.4 783,466 - -0.2 783,466 - +0.9 783,466 - -0.2 783,466 - -0.8 783,466 - -0.6 783,466 - -0.4 783,466 - +0.3 783,466 - +0.2 783,466 - +1.3 783,466 - +1.2 783,466 - +0.2 783,466 - +0.3 783,466 - +0.9 783,466 - -0.1 783,466 - -1.4 783,466 - -0.2 783,466 - -0.3 783,466 - -1.1 783,468 - -0.2 783,474 - +1.3 783,474 - -0.4 783,474 - -0.2 783,474 - -0.4 783,474 - -0.1 783,474 - +0.1 783,474 - -0.6 783,474 - +1.4 783,474 - +0.2 783,474 - +0.8 783,474 - +0.8 783,474 - +0.0 783,474 - +0.4 783,474 - -0.9 783,474 - +1.2 783,474 - -1.1 783,474 - +1.2 783,474 - -0.0 783,474 - +0.4 783,474 - -0.7 783,474 - -0.0 783,474 - +0.3 783,474 - -0.5 783,474 - -1.1 783,474 - +0.4 783,474 - -0.7 783,474 - -1.6 783,474 - -0.2 783,474 - -0.3 783,474 - -1.3 783,474 - -1.5 783,474 - +0.6 783,474 - +0.1 783,474 - -0.2 783,474 - -1.5 783,474 - -0.5 783,498 - -0.1 783,498 - +0.3 783,498 - -0.1 783,498 - +0.0 783,498 - -0.7 784,502 - LRK54_RS03700 0.72 +0.5 784,502 - LRK54_RS03700 0.72 +0.3 784,622 - LRK54_RS03700 0.80 +0.3 784,622 - LRK54_RS03700 0.80 +0.2 784,622 - LRK54_RS03700 0.80 +0.2 784,622 - LRK54_RS03700 0.80 +0.4 784,786 + +0.3 784,786 + +0.3 784,786 + -0.6 784,786 + +0.8 784,786 + -1.3 784,786 + -0.6 784,786 + -0.7 784,786 + -1.4 784,787 - +0.5 784,787 - -0.2 784,787 - -0.1 784,787 - -0.5 784,787 - +0.3 784,787 - -0.1 784,787 - -0.4 784,787 - -1.4 784,787 - +0.2 784,787 - -0.3 784,787 - +0.1 784,939 - +0.6 785,756 - LRK54_RS03710 0.12 -0.8 785,756 - LRK54_RS03710 0.12 -1.9 785,756 - LRK54_RS03710 0.12 -2.4 785,756 - LRK54_RS03710 0.12 -1.9 785,869 + LRK54_RS03710 0.19 -1.4 785,870 - LRK54_RS03710 0.19 -2.3 785,870 - LRK54_RS03710 0.19 -2.2 785,870 - LRK54_RS03710 0.19 -1.8
Or see this region's nucleotide sequence