Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02585

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02575 and LRK54_RS02580 are separated by 30 nucleotidesLRK54_RS02580 and LRK54_RS02585 overlap by 4 nucleotidesLRK54_RS02585 and LRK54_RS02590 are separated by 84 nucleotidesLRK54_RS02590 and LRK54_RS02595 are separated by 188 nucleotides LRK54_RS02575: LRK54_RS02575 - aldehyde dehydrogenase, at 554,711 to 556,198 _RS02575 LRK54_RS02580: LRK54_RS02580 - carbonate dehydratase, at 556,229 to 556,894 _RS02580 LRK54_RS02585: LRK54_RS02585 - Rid family hydrolase, at 556,891 to 557,322 _RS02585 LRK54_RS02590: LRK54_RS02590 - hypothetical protein, at 557,407 to 557,664 _RS02590 LRK54_RS02595: LRK54_RS02595 - N-formylglutamate deformylase, at 557,853 to 558,632 _RS02595 Position (kb) 556 557 558Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 556.172 kb on + strandat 556.172 kb on + strandat 556.173 kb on - strandat 556.173 kb on - strandat 556.173 kb on - strandat 556.173 kb on - strandat 556.173 kb on - strandat 556.197 kb on - strandat 557.060 kb on - strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.203 kb on + strand, within LRK54_RS02585at 557.203 kb on + strand, within LRK54_RS02585at 557.203 kb on + strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.213 kb on - strand, within LRK54_RS02585at 557.213 kb on - strand, within LRK54_RS02585at 557.213 kb on - strand, within LRK54_RS02585at 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.398 kb on - strandat 557.398 kb on - strandat 557.398 kb on - strandat 557.398 kb on - strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.656 kb on - strandat 557.690 kb on + strandat 557.690 kb on + strandat 557.690 kb on + strandat 557.690 kb on + strandat 557.690 kb on + strandat 557.690 kb on + strandat 557.691 kb on - strandat 557.691 kb on - strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.760 kb on - strandat 557.760 kb on - strandat 557.760 kb on - strandat 557.920 kb on + strandat 557.920 kb on + strandat 557.921 kb on - strandat 557.921 kb on - strandat 557.921 kb on - strandat 557.932 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.944 kb on + strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 557.945 kb on - strand, within LRK54_RS02595at 558.002 kb on - strand, within LRK54_RS02595at 558.016 kb on + strand, within LRK54_RS02595at 558.016 kb on + strand, within LRK54_RS02595at 558.016 kb on + strand, within LRK54_RS02595at 558.016 kb on + strand, within LRK54_RS02595at 558.016 kb on + strand, within LRK54_RS02595at 558.016 kb on + strand, within LRK54_RS02595at 558.016 kb on + strand, within LRK54_RS02595at 558.017 kb on - strand, within LRK54_RS02595at 558.017 kb on - strand, within LRK54_RS02595at 558.017 kb on - strand, within LRK54_RS02595at 558.017 kb on - strand, within LRK54_RS02595at 558.017 kb on - strand, within LRK54_RS02595at 558.017 kb on - strand, within LRK54_RS02595at 558.017 kb on - strand, within LRK54_RS02595at 558.017 kb on - strand, within LRK54_RS02595at 558.017 kb on - strand, within LRK54_RS02595at 558.017 kb on - strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.259 kb on + strand, within LRK54_RS02595at 558.260 kb on - strand, within LRK54_RS02595at 558.260 kb on - strand, within LRK54_RS02595at 558.260 kb on - strand, within LRK54_RS02595at 558.260 kb on - strand, within LRK54_RS02595at 558.279 kb on + strand, within LRK54_RS02595at 558.279 kb on + strand, within LRK54_RS02595at 558.279 kb on + strand, within LRK54_RS02595at 558.279 kb on + strand, within LRK54_RS02595at 558.279 kb on + strand, within LRK54_RS02595at 558.279 kb on + strand, within LRK54_RS02595at 558.280 kb on - strand, within LRK54_RS02595at 558.280 kb on - strand, within LRK54_RS02595

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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556,172 + +0.1
556,172 + -1.1
556,173 - -0.3
556,173 - -0.2
556,173 - +0.7
556,173 - +1.2
556,173 - +0.1
556,197 - +0.4
557,060 - LRK54_RS02585 0.39 +0.6
557,191 + LRK54_RS02585 0.69 -0.2
557,191 + LRK54_RS02585 0.69 +0.3
557,191 + LRK54_RS02585 0.69 +0.7
557,191 + LRK54_RS02585 0.69 +1.2
557,191 + LRK54_RS02585 0.69 +1.0
557,191 + LRK54_RS02585 0.69 -0.1
557,191 + LRK54_RS02585 0.69 +0.1
557,192 - LRK54_RS02585 0.70 -0.8
557,192 - LRK54_RS02585 0.70 +2.5
557,192 - LRK54_RS02585 0.70 -0.2
557,192 - LRK54_RS02585 0.70 -1.3
557,192 - LRK54_RS02585 0.70 -0.4
557,192 - LRK54_RS02585 0.70 +0.5
557,192 - LRK54_RS02585 0.70 +0.8
557,192 - LRK54_RS02585 0.70 +0.5
557,192 - LRK54_RS02585 0.70 +0.3
557,192 - LRK54_RS02585 0.70 +0.0
557,203 + LRK54_RS02585 0.72 +0.4
557,203 + LRK54_RS02585 0.72 +0.1
557,203 + LRK54_RS02585 0.72 -0.1
557,204 - LRK54_RS02585 0.72 +0.2
557,204 - LRK54_RS02585 0.72 -0.4
557,204 - LRK54_RS02585 0.72 +0.3
557,204 - LRK54_RS02585 0.72 +1.0
557,204 - LRK54_RS02585 0.72 +0.5
557,204 - LRK54_RS02585 0.72 -1.9
557,212 + LRK54_RS02585 0.74 +0.2
557,212 + LRK54_RS02585 0.74 +0.3
557,212 + LRK54_RS02585 0.74 +1.9
557,212 + LRK54_RS02585 0.74 +0.2
557,212 + LRK54_RS02585 0.74 +0.8
557,212 + LRK54_RS02585 0.74 -0.1
557,212 + LRK54_RS02585 0.74 -0.1
557,213 - LRK54_RS02585 0.75 +0.1
557,213 - LRK54_RS02585 0.75 +0.3
557,213 - LRK54_RS02585 0.75 -0.4
557,397 + -0.4
557,397 + +0.8
557,397 + +0.0
557,397 + -0.6
557,397 + +0.5
557,397 + +0.4
557,397 + +0.4
557,398 - +0.0
557,398 - +0.1
557,398 - +0.0
557,398 - -0.0
557,655 + -0.1
557,655 + -0.3
557,655 + +0.5
557,655 + -0.1
557,655 + -1.0
557,655 + +0.8
557,655 + -0.2
557,655 + -0.6
557,655 + -0.2
557,656 - +0.3
557,690 + -0.7
557,690 + -0.2
557,690 + -0.6
557,690 + -0.6
557,690 + -0.3
557,690 + -0.3
557,691 - +0.3
557,691 - -0.4
557,759 + +0.2
557,759 + -0.4
557,759 + +1.5
557,759 + +1.0
557,759 + -0.3
557,759 + +1.8
557,759 + -0.2
557,759 + +0.2
557,760 - -1.0
557,760 - -0.0
557,760 - -0.4
557,920 + +0.3
557,920 + -0.3
557,921 - -0.5
557,921 - -1.1
557,921 - +2.1
557,932 + LRK54_RS02595 0.10 -0.6
557,944 + LRK54_RS02595 0.12 +0.1
557,944 + LRK54_RS02595 0.12 -0.1
557,944 + LRK54_RS02595 0.12 -0.5
557,944 + LRK54_RS02595 0.12 -0.4
557,944 + LRK54_RS02595 0.12 +1.1
557,944 + LRK54_RS02595 0.12 +1.1
557,944 + LRK54_RS02595 0.12 +1.6
557,944 + LRK54_RS02595 0.12 -0.5
557,944 + LRK54_RS02595 0.12 -0.2
557,944 + LRK54_RS02595 0.12 +0.4
557,944 + LRK54_RS02595 0.12 -0.3
557,944 + LRK54_RS02595 0.12 +0.4
557,944 + LRK54_RS02595 0.12 +0.6
557,944 + LRK54_RS02595 0.12 +0.0
557,944 + LRK54_RS02595 0.12 -0.0
557,944 + LRK54_RS02595 0.12 +0.2
557,944 + LRK54_RS02595 0.12 -0.3
557,944 + LRK54_RS02595 0.12 -0.3
557,944 + LRK54_RS02595 0.12 -0.3
557,944 + LRK54_RS02595 0.12 -0.2
557,944 + LRK54_RS02595 0.12 -0.5
557,944 + LRK54_RS02595 0.12 -0.3
557,944 + LRK54_RS02595 0.12 -0.6
557,944 + LRK54_RS02595 0.12 +0.1
557,944 + LRK54_RS02595 0.12 -1.1
557,944 + LRK54_RS02595 0.12 -0.2
557,944 + LRK54_RS02595 0.12 -0.4
557,944 + LRK54_RS02595 0.12 +1.1
557,944 + LRK54_RS02595 0.12 -0.9
557,944 + LRK54_RS02595 0.12 +0.5
557,944 + LRK54_RS02595 0.12 +0.4
557,944 + LRK54_RS02595 0.12 -1.1
557,944 + LRK54_RS02595 0.12 -0.5
557,944 + LRK54_RS02595 0.12 -0.7
557,944 + LRK54_RS02595 0.12 -3.1
557,945 - LRK54_RS02595 0.12 +0.7
557,945 - LRK54_RS02595 0.12 +0.0
557,945 - LRK54_RS02595 0.12 -1.1
557,945 - LRK54_RS02595 0.12 +0.2
557,945 - LRK54_RS02595 0.12 -0.4
557,945 - LRK54_RS02595 0.12 -0.9
557,945 - LRK54_RS02595 0.12 -1.0
557,945 - LRK54_RS02595 0.12 +0.7
557,945 - LRK54_RS02595 0.12 -0.4
557,945 - LRK54_RS02595 0.12 -0.1
557,945 - LRK54_RS02595 0.12 +0.8
557,945 - LRK54_RS02595 0.12 +1.9
557,945 - LRK54_RS02595 0.12 -0.1
557,945 - LRK54_RS02595 0.12 -0.4
557,945 - LRK54_RS02595 0.12 -0.2
557,945 - LRK54_RS02595 0.12 -0.2
557,945 - LRK54_RS02595 0.12 +0.6
557,945 - LRK54_RS02595 0.12 +0.5
557,945 - LRK54_RS02595 0.12 -1.0
557,945 - LRK54_RS02595 0.12 +0.1
557,945 - LRK54_RS02595 0.12 +0.0
557,945 - LRK54_RS02595 0.12 +0.7
557,945 - LRK54_RS02595 0.12 +0.0
557,945 - LRK54_RS02595 0.12 -0.1
557,945 - LRK54_RS02595 0.12 +0.1
557,945 - LRK54_RS02595 0.12 +1.3
557,945 - LRK54_RS02595 0.12 -1.1
557,945 - LRK54_RS02595 0.12 +0.6
557,945 - LRK54_RS02595 0.12 +0.5
557,945 - LRK54_RS02595 0.12 +0.1
557,945 - LRK54_RS02595 0.12 +0.2
557,945 - LRK54_RS02595 0.12 -1.2
557,945 - LRK54_RS02595 0.12 -0.2
558,002 - LRK54_RS02595 0.19 +2.5
558,016 + LRK54_RS02595 0.21 -0.6
558,016 + LRK54_RS02595 0.21 +0.2
558,016 + LRK54_RS02595 0.21 +0.4
558,016 + LRK54_RS02595 0.21 +0.4
558,016 + LRK54_RS02595 0.21 +0.5
558,016 + LRK54_RS02595 0.21 +0.9
558,016 + LRK54_RS02595 0.21 -0.0
558,017 - LRK54_RS02595 0.21 +1.0
558,017 - LRK54_RS02595 0.21 +0.1
558,017 - LRK54_RS02595 0.21 +0.5
558,017 - LRK54_RS02595 0.21 +1.6
558,017 - LRK54_RS02595 0.21 +0.2
558,017 - LRK54_RS02595 0.21 -0.0
558,017 - LRK54_RS02595 0.21 +0.3
558,017 - LRK54_RS02595 0.21 +0.0
558,017 - LRK54_RS02595 0.21 +1.1
558,017 - LRK54_RS02595 0.21 +0.8
558,259 + LRK54_RS02595 0.52 -1.8
558,259 + LRK54_RS02595 0.52 +0.5
558,259 + LRK54_RS02595 0.52 -0.0
558,259 + LRK54_RS02595 0.52 -0.4
558,259 + LRK54_RS02595 0.52 +0.0
558,259 + LRK54_RS02595 0.52 +0.0
558,259 + LRK54_RS02595 0.52 +0.3
558,259 + LRK54_RS02595 0.52 +0.5
558,259 + LRK54_RS02595 0.52 +1.4
558,259 + LRK54_RS02595 0.52 +0.3
558,259 + LRK54_RS02595 0.52 -1.1
558,260 - LRK54_RS02595 0.52 +1.2
558,260 - LRK54_RS02595 0.52 +0.5
558,260 - LRK54_RS02595 0.52 -0.4
558,260 - LRK54_RS02595 0.52 -0.2
558,279 + LRK54_RS02595 0.55 -0.1
558,279 + LRK54_RS02595 0.55 +0.7
558,279 + LRK54_RS02595 0.55 +0.6
558,279 + LRK54_RS02595 0.55 -0.6
558,279 + LRK54_RS02595 0.55 -0.2
558,279 + LRK54_RS02595 0.55 +0.6
558,280 - LRK54_RS02595 0.55 -0.1
558,280 - LRK54_RS02595 0.55 +0.4

Or see this region's nucleotide sequence