Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23015 and HSERO_RS23020 are separated by 83 nucleotides HSERO_RS23020 and HSERO_RS23025 are separated by 51 nucleotides HSERO_RS23025 and HSERO_RS23030 are separated by 58 nucleotides HSERO_RS23030 and HSERO_RS23035 overlap by 4 nucleotides
HSERO_RS23015: HSERO_RS23015 - GntR family transcriptional regulator, at 5,280,182 to 5,280,904
_RS23015
HSERO_RS23020: HSERO_RS23020 - amino acid ABC transporter, at 5,280,988 to 5,281,791
_RS23020
HSERO_RS23025: HSERO_RS23025 - phosphate ABC transporter ATP-binding protein, at 5,281,843 to 5,282,562
_RS23025
HSERO_RS23030: HSERO_RS23030 - amino acid ABC transporter permease, at 5,282,621 to 5,283,274
_RS23030
HSERO_RS23035: HSERO_RS23035 - ABC transporter permease, at 5,283,271 to 5,284,104
_RS23035
Position (kb) 5281
5282
5283 Strain fitness (log2 ratio) -2
-1
0
1 at 5281.003 kb on - strand at 5281.005 kb on - strand at 5281.054 kb on - strand at 5281.054 kb on - strand at 5281.137 kb on + strand, within HSERO_RS23020 at 5281.320 kb on + strand, within HSERO_RS23020 at 5281.373 kb on + strand, within HSERO_RS23020 at 5281.381 kb on - strand, within HSERO_RS23020 at 5281.444 kb on + strand, within HSERO_RS23020 at 5281.573 kb on - strand, within HSERO_RS23020 at 5281.614 kb on + strand, within HSERO_RS23020 at 5281.824 kb on + strand at 5281.945 kb on - strand, within HSERO_RS23025 at 5282.008 kb on - strand, within HSERO_RS23025 at 5282.079 kb on - strand, within HSERO_RS23025 at 5282.144 kb on - strand, within HSERO_RS23025 at 5282.147 kb on + strand, within HSERO_RS23025 at 5282.147 kb on + strand, within HSERO_RS23025 at 5282.155 kb on - strand, within HSERO_RS23025 at 5282.176 kb on - strand, within HSERO_RS23025 at 5282.200 kb on - strand, within HSERO_RS23025 at 5282.234 kb on - strand, within HSERO_RS23025 at 5282.236 kb on + strand, within HSERO_RS23025 at 5282.292 kb on - strand, within HSERO_RS23025 at 5282.303 kb on - strand, within HSERO_RS23025 at 5282.349 kb on + strand, within HSERO_RS23025 at 5282.352 kb on - strand, within HSERO_RS23025 at 5282.385 kb on + strand, within HSERO_RS23025 at 5282.416 kb on - strand, within HSERO_RS23025 at 5282.431 kb on - strand, within HSERO_RS23025 at 5282.431 kb on - strand, within HSERO_RS23025 at 5282.446 kb on + strand, within HSERO_RS23025 at 5282.634 kb on + strand at 5282.674 kb on + strand at 5282.676 kb on + strand at 5282.676 kb on + strand at 5282.684 kb on - strand at 5282.684 kb on - strand at 5282.692 kb on + strand, within HSERO_RS23030 at 5282.755 kb on + strand, within HSERO_RS23030 at 5282.913 kb on + strand, within HSERO_RS23030 at 5282.936 kb on + strand, within HSERO_RS23030 at 5283.041 kb on - strand, within HSERO_RS23030 at 5283.084 kb on + strand, within HSERO_RS23030 at 5283.356 kb on - strand, within HSERO_RS23035 at 5283.399 kb on + strand, within HSERO_RS23035 at 5283.433 kb on + strand, within HSERO_RS23035 at 5283.451 kb on + strand, within HSERO_RS23035 at 5283.511 kb on + strand, within HSERO_RS23035
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 5,281,003 - +0.0 5,281,005 - +0.7 5,281,054 - -2.1 5,281,054 - -0.2 5,281,137 + HSERO_RS23020 0.19 +0.3 5,281,320 + HSERO_RS23020 0.41 -2.3 5,281,373 + HSERO_RS23020 0.48 +0.1 5,281,381 - HSERO_RS23020 0.49 +0.1 5,281,444 + HSERO_RS23020 0.57 -0.1 5,281,573 - HSERO_RS23020 0.73 -0.1 5,281,614 + HSERO_RS23020 0.78 -0.7 5,281,824 + -0.1 5,281,945 - HSERO_RS23025 0.14 +0.9 5,282,008 - HSERO_RS23025 0.23 -0.3 5,282,079 - HSERO_RS23025 0.33 -1.2 5,282,144 - HSERO_RS23025 0.42 -1.3 5,282,147 + HSERO_RS23025 0.42 -0.2 5,282,147 + HSERO_RS23025 0.42 -0.9 5,282,155 - HSERO_RS23025 0.43 -0.8 5,282,176 - HSERO_RS23025 0.46 -0.4 5,282,200 - HSERO_RS23025 0.50 +1.1 5,282,234 - HSERO_RS23025 0.54 -1.0 5,282,236 + HSERO_RS23025 0.55 +0.2 5,282,292 - HSERO_RS23025 0.62 -0.2 5,282,303 - HSERO_RS23025 0.64 -1.2 5,282,349 + HSERO_RS23025 0.70 +0.0 5,282,352 - HSERO_RS23025 0.71 -0.6 5,282,385 + HSERO_RS23025 0.75 +0.2 5,282,416 - HSERO_RS23025 0.80 +0.8 5,282,431 - HSERO_RS23025 0.82 +0.5 5,282,431 - HSERO_RS23025 0.82 -1.1 5,282,446 + HSERO_RS23025 0.84 +0.1 5,282,634 + +0.9 5,282,674 + -0.3 5,282,676 + -0.2 5,282,676 + -0.1 5,282,684 - -2.3 5,282,684 - +0.1 5,282,692 + HSERO_RS23030 0.11 +0.3 5,282,755 + HSERO_RS23030 0.20 +0.3 5,282,913 + HSERO_RS23030 0.45 -0.0 5,282,936 + HSERO_RS23030 0.48 +0.1 5,283,041 - HSERO_RS23030 0.64 -0.3 5,283,084 + HSERO_RS23030 0.71 -0.1 5,283,356 - HSERO_RS23035 0.10 -0.6 5,283,399 + HSERO_RS23035 0.15 -0.2 5,283,433 + HSERO_RS23035 0.19 -0.0 5,283,451 + HSERO_RS23035 0.22 +0.3 5,283,511 + HSERO_RS23035 0.29 -0.4
Or see this region's nucleotide sequence