Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01005 and HSERO_RS01010 are separated by 6 nucleotides HSERO_RS01010 and HSERO_RS01015 are separated by 30 nucleotides
HSERO_RS01005: HSERO_RS01005 - hypothetical protein, at 215,926 to 216,300
_RS01005
HSERO_RS01010: HSERO_RS01010 - tail fiber protein, at 216,307 to 217,431
_RS01010
HSERO_RS01015: HSERO_RS01015 - hypothetical protein, at 217,462 to 218,649
_RS01015
Position (kb) 216
217
218 Strain fitness (log2 ratio) -1
0
1
2
3 at 215.408 kb on + strand at 215.518 kb on + strand at 215.549 kb on + strand at 215.726 kb on - strand at 215.750 kb on - strand at 215.795 kb on + strand at 215.939 kb on - strand at 215.943 kb on - strand at 215.963 kb on + strand at 216.043 kb on - strand, within HSERO_RS01005 at 216.304 kb on + strand at 216.305 kb on + strand at 216.412 kb on - strand at 216.413 kb on + strand at 216.597 kb on + strand, within HSERO_RS01010 at 216.605 kb on - strand, within HSERO_RS01010 at 216.656 kb on + strand, within HSERO_RS01010 at 216.674 kb on - strand, within HSERO_RS01010 at 216.690 kb on - strand, within HSERO_RS01010 at 216.719 kb on - strand, within HSERO_RS01010 at 216.789 kb on - strand, within HSERO_RS01010 at 216.800 kb on + strand, within HSERO_RS01010 at 216.818 kb on - strand, within HSERO_RS01010 at 216.954 kb on - strand, within HSERO_RS01010 at 217.059 kb on - strand, within HSERO_RS01010 at 217.208 kb on - strand, within HSERO_RS01010 at 217.234 kb on - strand, within HSERO_RS01010 at 217.324 kb on - strand at 217.450 kb on + strand at 217.481 kb on - strand at 217.518 kb on + strand at 217.564 kb on - strand at 217.625 kb on + strand, within HSERO_RS01015 at 217.736 kb on + strand at 217.831 kb on - strand, within HSERO_RS01015 at 217.836 kb on - strand, within HSERO_RS01015 at 217.941 kb on - strand, within HSERO_RS01015 at 217.974 kb on + strand, within HSERO_RS01015 at 218.115 kb on - strand, within HSERO_RS01015 at 218.130 kb on + strand, within HSERO_RS01015 at 218.198 kb on + strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.282 kb on + strand, within HSERO_RS01015 at 218.381 kb on + strand, within HSERO_RS01015
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 215,408 + +0.1 215,518 + -1.0 215,549 + +0.1 215,726 - +0.1 215,750 - +3.3 215,795 + +0.1 215,939 - +0.8 215,943 - +0.0 215,963 + -1.5 216,043 - HSERO_RS01005 0.31 -0.6 216,304 + +0.6 216,305 + -0.3 216,412 - -0.6 216,413 + -0.8 216,597 + HSERO_RS01010 0.26 +0.2 216,605 - HSERO_RS01010 0.26 +0.0 216,656 + HSERO_RS01010 0.31 +0.4 216,674 - HSERO_RS01010 0.33 +0.3 216,690 - HSERO_RS01010 0.34 +0.4 216,719 - HSERO_RS01010 0.37 -0.0 216,789 - HSERO_RS01010 0.43 +0.2 216,800 + HSERO_RS01010 0.44 -0.2 216,818 - HSERO_RS01010 0.45 -0.3 216,954 - HSERO_RS01010 0.58 +0.8 217,059 - HSERO_RS01010 0.67 +0.6 217,208 - HSERO_RS01010 0.80 +1.0 217,234 - HSERO_RS01010 0.82 +0.1 217,324 - -0.7 217,450 + -0.1 217,481 - -0.3 217,518 + +0.3 217,564 - -0.2 217,625 + HSERO_RS01015 0.14 +1.0 217,736 + +0.4 217,831 - HSERO_RS01015 0.31 -1.2 217,836 - HSERO_RS01015 0.31 +0.0 217,941 - HSERO_RS01015 0.40 -0.5 217,974 + HSERO_RS01015 0.43 -0.4 218,115 - HSERO_RS01015 0.55 +0.9 218,130 + HSERO_RS01015 0.56 +1.0 218,198 + HSERO_RS01015 0.62 +0.0 218,206 - HSERO_RS01015 0.63 -0.1 218,206 - HSERO_RS01015 0.63 -0.6 218,206 - HSERO_RS01015 0.63 +0.5 218,282 + HSERO_RS01015 0.69 +0.0 218,381 + HSERO_RS01015 0.77 +0.5
Or see this region's nucleotide sequence