Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03359

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03358 and CCNA_03359 are separated by 178 nucleotidesCCNA_03359 and CCNA_03360 are separated by 166 nucleotides CCNA_03358: CCNA_03358 - glyceraldehyde 3-phosphate dehydrogenase, at 3,536,116 to 3,537,123 _03358 CCNA_03359: CCNA_03359 - phosphoglycerate kinase, at 3,537,302 to 3,538,492 _03359 CCNA_03360: CCNA_03360 - tagatose-1,6-bisphosphate aldolase, at 3,538,659 to 3,539,750 _03360 Position (kb) 3537 3538 3539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3537.117 kb on + strandat 3537.120 kb on + strandat 3537.130 kb on + strandat 3537.130 kb on + strandat 3537.138 kb on - strandat 3537.138 kb on - strandat 3537.209 kb on + strandat 3537.209 kb on + strandat 3537.209 kb on + strandat 3537.209 kb on + strandat 3537.211 kb on - strandat 3537.213 kb on - strandat 3537.215 kb on + strandat 3537.217 kb on - strandat 3537.217 kb on - strandat 3537.217 kb on - strandat 3537.223 kb on - strandat 3537.223 kb on - strandat 3537.228 kb on - strandat 3537.233 kb on + strandat 3537.235 kb on + strandat 3537.241 kb on + strandat 3537.257 kb on + strandat 3538.446 kb on + strandat 3538.500 kb on - strandat 3538.514 kb on + strandat 3538.514 kb on + strandat 3538.522 kb on - strandat 3538.547 kb on + strandat 3538.562 kb on + strandat 3538.576 kb on + strandat 3538.586 kb on - strandat 3538.601 kb on - strandat 3538.601 kb on - strandat 3538.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,537,117 + +1.4
3,537,120 + +1.3
3,537,130 + +0.7
3,537,130 + +0.0
3,537,138 - -1.9
3,537,138 - -2.2
3,537,209 + -1.3
3,537,209 + +0.3
3,537,209 + +1.4
3,537,209 + +1.7
3,537,211 - -1.8
3,537,213 - -1.7
3,537,215 + -0.2
3,537,217 - -1.4
3,537,217 - -0.1
3,537,217 - -0.5
3,537,223 - -0.6
3,537,223 - -1.1
3,537,228 - -1.6
3,537,233 + +1.2
3,537,235 + +0.5
3,537,241 + +1.3
3,537,257 + -2.7
3,538,446 + -1.0
3,538,500 - -1.4
3,538,514 + +1.9
3,538,514 + +1.1
3,538,522 - -3.0
3,538,547 + +1.4
3,538,562 + +0.9
3,538,576 + +1.8
3,538,586 - -2.6
3,538,601 - -0.8
3,538,601 - -0.9
3,538,624 + +1.5

Or see this region's nucleotide sequence