Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03358

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03355 and CCNA_03356 are separated by 69 nucleotidesCCNA_03356 and CCNA_03357 are separated by 3 nucleotidesCCNA_03357 and CCNA_03358 are separated by 215 nucleotidesCCNA_03358 and CCNA_03359 are separated by 178 nucleotides CCNA_03355: CCNA_03355 - acylamino-acid-releasing enzyme, at 3,533,132 to 3,535,117 _03355 CCNA_03356: CCNA_03356 - cell division protein ZapA, at 3,535,187 to 3,535,513 _03356 CCNA_03357: CCNA_03357 - hypothetical protein, at 3,535,517 to 3,535,900 _03357 CCNA_03358: CCNA_03358 - glyceraldehyde 3-phosphate dehydrogenase, at 3,536,116 to 3,537,123 _03358 CCNA_03359: CCNA_03359 - phosphoglycerate kinase, at 3,537,302 to 3,538,492 _03359 Position (kb) 3536 3537 3538Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3535.120 kb on - strandat 3535.120 kb on - strandat 3535.169 kb on - strandat 3535.239 kb on - strand, within CCNA_03356at 3535.268 kb on - strand, within CCNA_03356at 3535.290 kb on + strand, within CCNA_03356at 3535.290 kb on + strand, within CCNA_03356at 3535.292 kb on - strand, within CCNA_03356at 3535.298 kb on - strand, within CCNA_03356at 3535.308 kb on - strand, within CCNA_03356at 3535.320 kb on + strand, within CCNA_03356at 3535.328 kb on - strand, within CCNA_03356at 3535.342 kb on + strand, within CCNA_03356at 3535.347 kb on - strand, within CCNA_03356at 3535.353 kb on + strand, within CCNA_03356at 3535.371 kb on + strand, within CCNA_03356at 3535.387 kb on + strand, within CCNA_03356at 3535.395 kb on - strand, within CCNA_03356at 3535.436 kb on + strand, within CCNA_03356at 3535.441 kb on + strand, within CCNA_03356at 3535.441 kb on + strand, within CCNA_03356at 3535.444 kb on - strand, within CCNA_03356at 3535.449 kb on - strand, within CCNA_03356at 3535.455 kb on - strand, within CCNA_03356at 3535.481 kb on - strandat 3535.493 kb on - strandat 3535.510 kb on - strandat 3535.510 kb on - strandat 3535.515 kb on + strandat 3535.515 kb on + strandat 3535.523 kb on - strandat 3535.523 kb on - strandat 3535.523 kb on - strandat 3535.533 kb on - strandat 3535.559 kb on - strand, within CCNA_03357at 3535.580 kb on - strand, within CCNA_03357at 3535.600 kb on - strand, within CCNA_03357at 3535.600 kb on - strand, within CCNA_03357at 3535.600 kb on - strand, within CCNA_03357at 3535.600 kb on - strand, within CCNA_03357at 3535.628 kb on - strand, within CCNA_03357at 3535.642 kb on - strand, within CCNA_03357at 3535.658 kb on + strand, within CCNA_03357at 3535.686 kb on + strand, within CCNA_03357at 3535.694 kb on - strand, within CCNA_03357at 3535.700 kb on + strand, within CCNA_03357at 3535.708 kb on - strand, within CCNA_03357at 3535.727 kb on - strand, within CCNA_03357at 3535.740 kb on - strand, within CCNA_03357at 3535.740 kb on - strand, within CCNA_03357at 3535.754 kb on + strand, within CCNA_03357at 3535.754 kb on + strand, within CCNA_03357at 3535.826 kb on - strand, within CCNA_03357at 3535.828 kb on + strand, within CCNA_03357at 3535.834 kb on - strand, within CCNA_03357at 3535.836 kb on - strand, within CCNA_03357at 3535.836 kb on - strand, within CCNA_03357at 3535.857 kb on - strand, within CCNA_03357at 3535.870 kb on + strandat 3535.871 kb on + strandat 3535.872 kb on - strandat 3535.872 kb on - strandat 3535.872 kb on - strandat 3535.879 kb on - strandat 3535.879 kb on - strandat 3535.879 kb on - strandat 3535.879 kb on - strandat 3535.879 kb on - strandat 3535.884 kb on - strandat 3535.942 kb on + strandat 3535.942 kb on + strandat 3535.942 kb on + strandat 3535.942 kb on + strandat 3535.942 kb on + strandat 3535.942 kb on + strandat 3535.943 kb on + strandat 3535.943 kb on + strandat 3535.950 kb on - strandat 3535.950 kb on - strandat 3535.950 kb on - strandat 3535.950 kb on - strandat 3535.950 kb on - strandat 3535.950 kb on - strandat 3535.950 kb on - strandat 3535.950 kb on - strandat 3535.950 kb on - strandat 3535.950 kb on - strandat 3535.951 kb on - strandat 3535.951 kb on - strandat 3535.951 kb on - strandat 3535.978 kb on + strandat 3535.983 kb on + strandat 3535.983 kb on + strandat 3535.983 kb on + strandat 3535.991 kb on - strandat 3535.991 kb on - strandat 3536.001 kb on - strandat 3536.030 kb on - strandat 3536.058 kb on + strandat 3536.066 kb on - strandat 3536.099 kb on + strandat 3537.117 kb on + strandat 3537.120 kb on + strandat 3537.130 kb on + strandat 3537.130 kb on + strandat 3537.138 kb on - strandat 3537.138 kb on - strandat 3537.209 kb on + strandat 3537.209 kb on + strandat 3537.209 kb on + strandat 3537.209 kb on + strandat 3537.211 kb on - strandat 3537.213 kb on - strandat 3537.215 kb on + strandat 3537.217 kb on - strandat 3537.217 kb on - strandat 3537.217 kb on - strandat 3537.223 kb on - strandat 3537.223 kb on - strandat 3537.228 kb on - strandat 3537.233 kb on + strandat 3537.235 kb on + strandat 3537.241 kb on + strandat 3537.257 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,535,120 - +0.5
3,535,120 - +0.8
3,535,169 - +1.2
3,535,239 - CCNA_03356 0.16 +1.4
3,535,268 - CCNA_03356 0.25 +1.0
3,535,290 + CCNA_03356 0.31 -0.4
3,535,290 + CCNA_03356 0.31 +0.1
3,535,292 - CCNA_03356 0.32 -1.1
3,535,298 - CCNA_03356 0.34 +1.2
3,535,308 - CCNA_03356 0.37 +1.6
3,535,320 + CCNA_03356 0.41 +0.8
3,535,328 - CCNA_03356 0.43 +0.3
3,535,342 + CCNA_03356 0.47 +0.1
3,535,347 - CCNA_03356 0.49 +0.9
3,535,353 + CCNA_03356 0.51 +2.0
3,535,371 + CCNA_03356 0.56 -0.7
3,535,387 + CCNA_03356 0.61 -2.1
3,535,395 - CCNA_03356 0.64 +1.7
3,535,436 + CCNA_03356 0.76 -0.9
3,535,441 + CCNA_03356 0.78 -0.4
3,535,441 + CCNA_03356 0.78 -1.0
3,535,444 - CCNA_03356 0.79 -0.4
3,535,449 - CCNA_03356 0.80 +1.0
3,535,455 - CCNA_03356 0.82 +0.2
3,535,481 - +1.5
3,535,493 - +1.3
3,535,510 - +1.2
3,535,510 - +1.3
3,535,515 + -1.2
3,535,515 + -1.7
3,535,523 - +1.7
3,535,523 - +1.0
3,535,523 - +1.6
3,535,533 - +1.5
3,535,559 - CCNA_03357 0.11 +2.6
3,535,580 - CCNA_03357 0.16 +1.3
3,535,600 - CCNA_03357 0.22 +2.2
3,535,600 - CCNA_03357 0.22 +1.8
3,535,600 - CCNA_03357 0.22 +1.3
3,535,600 - CCNA_03357 0.22 +0.8
3,535,628 - CCNA_03357 0.29 +1.6
3,535,642 - CCNA_03357 0.33 +1.1
3,535,658 + CCNA_03357 0.37 -1.8
3,535,686 + CCNA_03357 0.44 -0.8
3,535,694 - CCNA_03357 0.46 +1.2
3,535,700 + CCNA_03357 0.48 +0.3
3,535,708 - CCNA_03357 0.50 +1.9
3,535,727 - CCNA_03357 0.55 +1.5
3,535,740 - CCNA_03357 0.58 +0.5
3,535,740 - CCNA_03357 0.58 +0.9
3,535,754 + CCNA_03357 0.62 -3.0
3,535,754 + CCNA_03357 0.62 -0.5
3,535,826 - CCNA_03357 0.80 +0.4
3,535,828 + CCNA_03357 0.81 -3.0
3,535,834 - CCNA_03357 0.83 +0.5
3,535,836 - CCNA_03357 0.83 +1.5
3,535,836 - CCNA_03357 0.83 +0.4
3,535,857 - CCNA_03357 0.89 +0.8
3,535,870 + -0.7
3,535,871 + -0.3
3,535,872 - +0.5
3,535,872 - +2.0
3,535,872 - +1.1
3,535,879 - +1.0
3,535,879 - +0.8
3,535,879 - -0.0
3,535,879 - +0.9
3,535,879 - +1.0
3,535,884 - +0.8
3,535,942 + -0.3
3,535,942 + -1.3
3,535,942 + -2.5
3,535,942 + +0.3
3,535,942 + -1.9
3,535,942 + -0.5
3,535,943 + +0.7
3,535,943 + -0.8
3,535,950 - +0.9
3,535,950 - +0.6
3,535,950 - -0.0
3,535,950 - +1.5
3,535,950 - -0.5
3,535,950 - +0.3
3,535,950 - -0.3
3,535,950 - -0.3
3,535,950 - +0.5
3,535,950 - +0.1
3,535,951 - +0.4
3,535,951 - +0.3
3,535,951 - +1.1
3,535,978 + -1.2
3,535,983 + -1.0
3,535,983 + +0.1
3,535,983 + -1.8
3,535,991 - +1.0
3,535,991 - -0.5
3,536,001 - -1.2
3,536,030 - -1.5
3,536,058 + -0.6
3,536,066 - -0.2
3,536,099 + +0.1
3,537,117 + +1.4
3,537,120 + +1.3
3,537,130 + +0.7
3,537,130 + +0.0
3,537,138 - -1.9
3,537,138 - -2.2
3,537,209 + -1.3
3,537,209 + +0.3
3,537,209 + +1.4
3,537,209 + +1.7
3,537,211 - -1.8
3,537,213 - -1.7
3,537,215 + -0.2
3,537,217 - -1.4
3,537,217 - -0.1
3,537,217 - -0.5
3,537,223 - -0.6
3,537,223 - -1.1
3,537,228 - -1.6
3,537,233 + +1.2
3,537,235 + +0.5
3,537,241 + +1.3
3,537,257 + -2.7

Or see this region's nucleotide sequence