Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03355 and CCNA_03356 are separated by 69 nucleotides CCNA_03356 and CCNA_03357 are separated by 3 nucleotides CCNA_03357 and CCNA_03358 are separated by 215 nucleotides CCNA_03358 and CCNA_03359 are separated by 178 nucleotides
CCNA_03355: CCNA_03355 - acylamino-acid-releasing enzyme, at 3,533,132 to 3,535,117
_03355
CCNA_03356: CCNA_03356 - cell division protein ZapA, at 3,535,187 to 3,535,513
_03356
CCNA_03357: CCNA_03357 - hypothetical protein, at 3,535,517 to 3,535,900
_03357
CCNA_03358: CCNA_03358 - glyceraldehyde 3-phosphate dehydrogenase, at 3,536,116 to 3,537,123
_03358
CCNA_03359: CCNA_03359 - phosphoglycerate kinase, at 3,537,302 to 3,538,492
_03359
Position (kb)
3536
3537
3538 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3535.120 kb on - strand at 3535.120 kb on - strand at 3535.169 kb on - strand at 3535.239 kb on - strand, within CCNA_03356 at 3535.268 kb on - strand, within CCNA_03356 at 3535.290 kb on + strand, within CCNA_03356 at 3535.290 kb on + strand, within CCNA_03356 at 3535.292 kb on - strand, within CCNA_03356 at 3535.298 kb on - strand, within CCNA_03356 at 3535.308 kb on - strand, within CCNA_03356 at 3535.320 kb on + strand, within CCNA_03356 at 3535.328 kb on - strand, within CCNA_03356 at 3535.342 kb on + strand, within CCNA_03356 at 3535.347 kb on - strand, within CCNA_03356 at 3535.353 kb on + strand, within CCNA_03356 at 3535.371 kb on + strand, within CCNA_03356 at 3535.387 kb on + strand, within CCNA_03356 at 3535.395 kb on - strand, within CCNA_03356 at 3535.436 kb on + strand, within CCNA_03356 at 3535.441 kb on + strand, within CCNA_03356 at 3535.441 kb on + strand, within CCNA_03356 at 3535.444 kb on - strand, within CCNA_03356 at 3535.449 kb on - strand, within CCNA_03356 at 3535.455 kb on - strand, within CCNA_03356 at 3535.481 kb on - strand at 3535.493 kb on - strand at 3535.510 kb on - strand at 3535.510 kb on - strand at 3535.515 kb on + strand at 3535.515 kb on + strand at 3535.523 kb on - strand at 3535.523 kb on - strand at 3535.523 kb on - strand at 3535.533 kb on - strand at 3535.559 kb on - strand, within CCNA_03357 at 3535.580 kb on - strand, within CCNA_03357 at 3535.600 kb on - strand, within CCNA_03357 at 3535.600 kb on - strand, within CCNA_03357 at 3535.600 kb on - strand, within CCNA_03357 at 3535.600 kb on - strand, within CCNA_03357 at 3535.628 kb on - strand, within CCNA_03357 at 3535.642 kb on - strand, within CCNA_03357 at 3535.658 kb on + strand, within CCNA_03357 at 3535.686 kb on + strand, within CCNA_03357 at 3535.694 kb on - strand, within CCNA_03357 at 3535.700 kb on + strand, within CCNA_03357 at 3535.708 kb on - strand, within CCNA_03357 at 3535.727 kb on - strand, within CCNA_03357 at 3535.740 kb on - strand, within CCNA_03357 at 3535.740 kb on - strand, within CCNA_03357 at 3535.754 kb on + strand, within CCNA_03357 at 3535.754 kb on + strand, within CCNA_03357 at 3535.826 kb on - strand, within CCNA_03357 at 3535.828 kb on + strand, within CCNA_03357 at 3535.834 kb on - strand, within CCNA_03357 at 3535.836 kb on - strand, within CCNA_03357 at 3535.836 kb on - strand, within CCNA_03357 at 3535.857 kb on - strand, within CCNA_03357 at 3535.870 kb on + strand at 3535.871 kb on + strand at 3535.872 kb on - strand at 3535.872 kb on - strand at 3535.872 kb on - strand at 3535.879 kb on - strand at 3535.879 kb on - strand at 3535.879 kb on - strand at 3535.879 kb on - strand at 3535.879 kb on - strand at 3535.884 kb on - strand at 3535.942 kb on + strand at 3535.942 kb on + strand at 3535.942 kb on + strand at 3535.942 kb on + strand at 3535.942 kb on + strand at 3535.942 kb on + strand at 3535.943 kb on + strand at 3535.943 kb on + strand at 3535.950 kb on - strand at 3535.950 kb on - strand at 3535.950 kb on - strand at 3535.950 kb on - strand at 3535.950 kb on - strand at 3535.950 kb on - strand at 3535.950 kb on - strand at 3535.950 kb on - strand at 3535.950 kb on - strand at 3535.950 kb on - strand at 3535.951 kb on - strand at 3535.951 kb on - strand at 3535.951 kb on - strand at 3535.978 kb on + strand at 3535.983 kb on + strand at 3535.983 kb on + strand at 3535.983 kb on + strand at 3535.991 kb on - strand at 3535.991 kb on - strand at 3536.001 kb on - strand at 3536.030 kb on - strand at 3536.058 kb on + strand at 3536.066 kb on - strand at 3536.099 kb on + strand at 3537.117 kb on + strand at 3537.120 kb on + strand at 3537.130 kb on + strand at 3537.130 kb on + strand at 3537.138 kb on - strand at 3537.138 kb on - strand at 3537.209 kb on + strand at 3537.209 kb on + strand at 3537.209 kb on + strand at 3537.209 kb on + strand at 3537.211 kb on - strand at 3537.213 kb on - strand at 3537.215 kb on + strand at 3537.217 kb on - strand at 3537.217 kb on - strand at 3537.217 kb on - strand at 3537.223 kb on - strand at 3537.223 kb on - strand at 3537.228 kb on - strand at 3537.233 kb on + strand at 3537.235 kb on + strand at 3537.241 kb on + strand at 3537.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 3,535,120 - +0.5 3,535,120 - +0.8 3,535,169 - +1.2 3,535,239 - CCNA_03356 0.16 +1.4 3,535,268 - CCNA_03356 0.25 +1.0 3,535,290 + CCNA_03356 0.31 -0.4 3,535,290 + CCNA_03356 0.31 +0.1 3,535,292 - CCNA_03356 0.32 -1.1 3,535,298 - CCNA_03356 0.34 +1.2 3,535,308 - CCNA_03356 0.37 +1.6 3,535,320 + CCNA_03356 0.41 +0.8 3,535,328 - CCNA_03356 0.43 +0.3 3,535,342 + CCNA_03356 0.47 +0.1 3,535,347 - CCNA_03356 0.49 +0.9 3,535,353 + CCNA_03356 0.51 +2.0 3,535,371 + CCNA_03356 0.56 -0.7 3,535,387 + CCNA_03356 0.61 -2.1 3,535,395 - CCNA_03356 0.64 +1.7 3,535,436 + CCNA_03356 0.76 -0.9 3,535,441 + CCNA_03356 0.78 -0.4 3,535,441 + CCNA_03356 0.78 -1.0 3,535,444 - CCNA_03356 0.79 -0.4 3,535,449 - CCNA_03356 0.80 +1.0 3,535,455 - CCNA_03356 0.82 +0.2 3,535,481 - +1.5 3,535,493 - +1.3 3,535,510 - +1.2 3,535,510 - +1.3 3,535,515 + -1.2 3,535,515 + -1.7 3,535,523 - +1.7 3,535,523 - +1.0 3,535,523 - +1.6 3,535,533 - +1.5 3,535,559 - CCNA_03357 0.11 +2.6 3,535,580 - CCNA_03357 0.16 +1.3 3,535,600 - CCNA_03357 0.22 +2.2 3,535,600 - CCNA_03357 0.22 +1.8 3,535,600 - CCNA_03357 0.22 +1.3 3,535,600 - CCNA_03357 0.22 +0.8 3,535,628 - CCNA_03357 0.29 +1.6 3,535,642 - CCNA_03357 0.33 +1.1 3,535,658 + CCNA_03357 0.37 -1.8 3,535,686 + CCNA_03357 0.44 -0.8 3,535,694 - CCNA_03357 0.46 +1.2 3,535,700 + CCNA_03357 0.48 +0.3 3,535,708 - CCNA_03357 0.50 +1.9 3,535,727 - CCNA_03357 0.55 +1.5 3,535,740 - CCNA_03357 0.58 +0.5 3,535,740 - CCNA_03357 0.58 +0.9 3,535,754 + CCNA_03357 0.62 -3.0 3,535,754 + CCNA_03357 0.62 -0.5 3,535,826 - CCNA_03357 0.80 +0.4 3,535,828 + CCNA_03357 0.81 -3.0 3,535,834 - CCNA_03357 0.83 +0.5 3,535,836 - CCNA_03357 0.83 +1.5 3,535,836 - CCNA_03357 0.83 +0.4 3,535,857 - CCNA_03357 0.89 +0.8 3,535,870 + -0.7 3,535,871 + -0.3 3,535,872 - +0.5 3,535,872 - +2.0 3,535,872 - +1.1 3,535,879 - +1.0 3,535,879 - +0.8 3,535,879 - -0.0 3,535,879 - +0.9 3,535,879 - +1.0 3,535,884 - +0.8 3,535,942 + -0.3 3,535,942 + -1.3 3,535,942 + -2.5 3,535,942 + +0.3 3,535,942 + -1.9 3,535,942 + -0.5 3,535,943 + +0.7 3,535,943 + -0.8 3,535,950 - +0.9 3,535,950 - +0.6 3,535,950 - -0.0 3,535,950 - +1.5 3,535,950 - -0.5 3,535,950 - +0.3 3,535,950 - -0.3 3,535,950 - -0.3 3,535,950 - +0.5 3,535,950 - +0.1 3,535,951 - +0.4 3,535,951 - +0.3 3,535,951 - +1.1 3,535,978 + -1.2 3,535,983 + -1.0 3,535,983 + +0.1 3,535,983 + -1.8 3,535,991 - +1.0 3,535,991 - -0.5 3,536,001 - -1.2 3,536,030 - -1.5 3,536,058 + -0.6 3,536,066 - -0.2 3,536,099 + +0.1 3,537,117 + +1.4 3,537,120 + +1.3 3,537,130 + +0.7 3,537,130 + +0.0 3,537,138 - -1.9 3,537,138 - -2.2 3,537,209 + -1.3 3,537,209 + +0.3 3,537,209 + +1.4 3,537,209 + +1.7 3,537,211 - -1.8 3,537,213 - -1.7 3,537,215 + -0.2 3,537,217 - -1.4 3,537,217 - -0.1 3,537,217 - -0.5 3,537,223 - -0.6 3,537,223 - -1.1 3,537,228 - -1.6 3,537,233 + +1.2 3,537,235 + +0.5 3,537,241 + +1.3 3,537,257 + -2.7
Or see this region's nucleotide sequence