Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02373

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02371 and CCNA_02372 are separated by 26 nucleotidesCCNA_02372 and CCNA_02373 overlap by 29 nucleotidesCCNA_02373 and CCNA_02374 overlap by 7 nucleotidesCCNA_02374 and CCNA_02375 are separated by 58 nucleotidesCCNA_02375 and CCNA_02376 overlap by 12 nucleotidesCCNA_02376 and CCNA_02377 overlap by 4 nucleotides CCNA_02371: CCNA_02371 - tryptophan halogenase superfamily protein, at 2,517,092 to 2,518,606 _02371 CCNA_02372: CCNA_02372 - hypothetical protein, at 2,518,633 to 2,518,776 _02372 CCNA_02373: CCNA_02373 - transposase, at 2,518,748 to 2,519,674 _02373 CCNA_02374: CCNA_02374 - transposase, at 2,519,668 to 2,519,934 _02374 CCNA_02375: CCNA_02375 - hypothetical protein, at 2,519,993 to 2,520,256 _02375 CCNA_02376: CCNA_02376 - hypothetical protein, at 2,520,245 to 2,520,523 _02376 CCNA_02377: CCNA_02377 - hypothetical protein, at 2,520,520 to 2,521,242 _02377 Position (kb) 2518 2519 2520Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2517.750 kb on + strand, within CCNA_02371at 2517.750 kb on + strand, within CCNA_02371at 2517.773 kb on + strand, within CCNA_02371at 2517.773 kb on + strand, within CCNA_02371at 2517.773 kb on + strand, within CCNA_02371at 2517.773 kb on + strand, within CCNA_02371at 2517.773 kb on + strand, within CCNA_02371at 2517.781 kb on - strand, within CCNA_02371at 2517.781 kb on - strand, within CCNA_02371at 2517.781 kb on - strand, within CCNA_02371at 2517.781 kb on - strand, within CCNA_02371at 2517.820 kb on - strand, within CCNA_02371at 2517.833 kb on + strand, within CCNA_02371at 2517.856 kb on + strand, within CCNA_02371at 2517.856 kb on + strand, within CCNA_02371at 2517.863 kb on + strand, within CCNA_02371at 2517.863 kb on + strand, within CCNA_02371at 2517.863 kb on + strand, within CCNA_02371at 2517.863 kb on + strand, within CCNA_02371at 2517.863 kb on + strand, within CCNA_02371at 2517.871 kb on - strand, within CCNA_02371at 2517.871 kb on - strand, within CCNA_02371at 2517.889 kb on - strand, within CCNA_02371at 2517.914 kb on + strand, within CCNA_02371at 2517.914 kb on - strand, within CCNA_02371at 2517.949 kb on - strand, within CCNA_02371at 2518.024 kb on - strand, within CCNA_02371at 2518.028 kb on - strand, within CCNA_02371at 2518.031 kb on - strand, within CCNA_02371at 2518.060 kb on + strand, within CCNA_02371at 2518.091 kb on - strand, within CCNA_02371at 2518.137 kb on - strand, within CCNA_02371at 2518.142 kb on - strand, within CCNA_02371at 2518.143 kb on + strand, within CCNA_02371at 2518.147 kb on - strand, within CCNA_02371at 2518.148 kb on + strand, within CCNA_02371at 2518.148 kb on + strand, within CCNA_02371at 2518.156 kb on - strand, within CCNA_02371at 2518.185 kb on + strand, within CCNA_02371at 2518.193 kb on - strand, within CCNA_02371at 2518.226 kb on + strand, within CCNA_02371at 2518.226 kb on + strand, within CCNA_02371at 2518.234 kb on - strand, within CCNA_02371at 2518.234 kb on - strand, within CCNA_02371at 2518.234 kb on - strand, within CCNA_02371at 2518.238 kb on + strand, within CCNA_02371at 2518.264 kb on + strand, within CCNA_02371at 2518.267 kb on + strand, within CCNA_02371at 2518.275 kb on - strand, within CCNA_02371at 2518.343 kb on - strand, within CCNA_02371at 2518.343 kb on - strand, within CCNA_02371at 2518.343 kb on - strand, within CCNA_02371at 2518.359 kb on + strand, within CCNA_02371at 2518.377 kb on + strand, within CCNA_02371at 2518.399 kb on + strand, within CCNA_02371at 2518.425 kb on - strand, within CCNA_02371at 2518.434 kb on + strand, within CCNA_02371at 2518.434 kb on + strand, within CCNA_02371at 2518.448 kb on - strand, within CCNA_02371at 2518.502 kb on + strandat 2518.531 kb on - strandat 2518.555 kb on - strandat 2518.595 kb on + strandat 2518.595 kb on + strandat 2518.600 kb on + strandat 2518.603 kb on - strandat 2518.605 kb on + strandat 2518.608 kb on - strandat 2518.641 kb on + strandat 2518.650 kb on - strand, within CCNA_02372at 2518.678 kb on + strandat 2518.685 kb on + strand, within CCNA_02372at 2518.702 kb on + strand, within CCNA_02372at 2518.703 kb on - strand, within CCNA_02372at 2518.768 kb on - strandat 2518.768 kb on - strandat 2519.999 kb on + strandat 2519.999 kb on + strandat 2520.068 kb on + strand, within CCNA_02375at 2520.076 kb on - strand, within CCNA_02375at 2520.076 kb on - strand, within CCNA_02375at 2520.092 kb on + strand, within CCNA_02375at 2520.109 kb on - strand, within CCNA_02375at 2520.137 kb on + strand, within CCNA_02375at 2520.137 kb on + strand, within CCNA_02375at 2520.182 kb on - strand, within CCNA_02375at 2520.184 kb on - strand, within CCNA_02375at 2520.209 kb on - strand, within CCNA_02375at 2520.221 kb on - strand, within CCNA_02375at 2520.223 kb on + strand, within CCNA_02375at 2520.251 kb on + strandat 2520.251 kb on + strandat 2520.259 kb on - strandat 2520.393 kb on + strand, within CCNA_02376at 2520.414 kb on + strand, within CCNA_02376at 2520.481 kb on - strand, within CCNA_02376at 2520.491 kb on - strand, within CCNA_02376at 2520.525 kb on - strandat 2520.549 kb on + strandat 2520.583 kb on - strandat 2520.595 kb on + strand, within CCNA_02377at 2520.602 kb on - strand, within CCNA_02377at 2520.603 kb on - strand, within CCNA_02377at 2520.603 kb on - strand, within CCNA_02377at 2520.615 kb on + strand, within CCNA_02377at 2520.659 kb on - strand, within CCNA_02377

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,517,750 + CCNA_02371 0.43 -0.9
2,517,750 + CCNA_02371 0.43 -0.5
2,517,773 + CCNA_02371 0.45 -1.4
2,517,773 + CCNA_02371 0.45 +0.9
2,517,773 + CCNA_02371 0.45 -1.7
2,517,773 + CCNA_02371 0.45 -0.9
2,517,773 + CCNA_02371 0.45 -1.4
2,517,781 - CCNA_02371 0.45 +0.3
2,517,781 - CCNA_02371 0.45 +0.9
2,517,781 - CCNA_02371 0.45 -1.0
2,517,781 - CCNA_02371 0.45 -2.0
2,517,820 - CCNA_02371 0.48 -0.2
2,517,833 + CCNA_02371 0.49 -0.3
2,517,856 + CCNA_02371 0.50 +0.9
2,517,856 + CCNA_02371 0.50 +2.5
2,517,863 + CCNA_02371 0.51 -1.4
2,517,863 + CCNA_02371 0.51 -1.2
2,517,863 + CCNA_02371 0.51 -0.7
2,517,863 + CCNA_02371 0.51 -3.1
2,517,863 + CCNA_02371 0.51 +0.9
2,517,871 - CCNA_02371 0.51 +1.2
2,517,871 - CCNA_02371 0.51 -1.5
2,517,889 - CCNA_02371 0.53 -2.2
2,517,914 + CCNA_02371 0.54 -1.1
2,517,914 - CCNA_02371 0.54 +1.1
2,517,949 - CCNA_02371 0.57 +0.5
2,518,024 - CCNA_02371 0.62 -0.5
2,518,028 - CCNA_02371 0.62 +0.1
2,518,031 - CCNA_02371 0.62 -0.9
2,518,060 + CCNA_02371 0.64 -1.3
2,518,091 - CCNA_02371 0.66 +1.8
2,518,137 - CCNA_02371 0.69 -1.7
2,518,142 - CCNA_02371 0.69 -1.4
2,518,143 + CCNA_02371 0.69 +0.5
2,518,147 - CCNA_02371 0.70 -0.9
2,518,148 + CCNA_02371 0.70 -1.8
2,518,148 + CCNA_02371 0.70 -0.4
2,518,156 - CCNA_02371 0.70 -1.6
2,518,185 + CCNA_02371 0.72 +1.5
2,518,193 - CCNA_02371 0.73 -2.4
2,518,226 + CCNA_02371 0.75 +0.4
2,518,226 + CCNA_02371 0.75 +0.6
2,518,234 - CCNA_02371 0.75 +0.3
2,518,234 - CCNA_02371 0.75 -1.3
2,518,234 - CCNA_02371 0.75 -0.6
2,518,238 + CCNA_02371 0.76 -1.4
2,518,264 + CCNA_02371 0.77 -1.6
2,518,267 + CCNA_02371 0.78 +0.4
2,518,275 - CCNA_02371 0.78 -2.4
2,518,343 - CCNA_02371 0.83 -1.4
2,518,343 - CCNA_02371 0.83 -2.1
2,518,343 - CCNA_02371 0.83 -0.0
2,518,359 + CCNA_02371 0.84 +0.0
2,518,377 + CCNA_02371 0.85 +0.7
2,518,399 + CCNA_02371 0.86 -1.5
2,518,425 - CCNA_02371 0.88 -2.6
2,518,434 + CCNA_02371 0.89 +0.4
2,518,434 + CCNA_02371 0.89 +0.1
2,518,448 - CCNA_02371 0.90 -0.3
2,518,502 + +0.4
2,518,531 - -0.9
2,518,555 - -0.2
2,518,595 + +1.1
2,518,595 + +0.2
2,518,600 + -0.1
2,518,603 - -0.9
2,518,605 + -1.5
2,518,608 - +1.4
2,518,641 + -0.1
2,518,650 - CCNA_02372 0.12 +0.8
2,518,678 + -0.3
2,518,685 + CCNA_02372 0.36 -2.4
2,518,702 + CCNA_02372 0.48 -1.1
2,518,703 - CCNA_02372 0.49 -0.3
2,518,768 - -0.7
2,518,768 - +1.2
2,519,999 + -2.7
2,519,999 + -1.9
2,520,068 + CCNA_02375 0.28 -0.9
2,520,076 - CCNA_02375 0.31 -1.2
2,520,076 - CCNA_02375 0.31 -0.9
2,520,092 + CCNA_02375 0.38 -1.0
2,520,109 - CCNA_02375 0.44 +0.4
2,520,137 + CCNA_02375 0.55 -2.9
2,520,137 + CCNA_02375 0.55 +1.7
2,520,182 - CCNA_02375 0.72 +0.2
2,520,184 - CCNA_02375 0.72 +0.4
2,520,209 - CCNA_02375 0.82 +1.8
2,520,221 - CCNA_02375 0.86 +0.6
2,520,223 + CCNA_02375 0.87 -0.9
2,520,251 + -2.4
2,520,251 + -0.8
2,520,259 - +0.3
2,520,393 + CCNA_02376 0.53 -0.2
2,520,414 + CCNA_02376 0.61 +1.0
2,520,481 - CCNA_02376 0.85 +0.3
2,520,491 - CCNA_02376 0.88 +0.3
2,520,525 - +1.1
2,520,549 + -2.8
2,520,583 - +1.1
2,520,595 + CCNA_02377 0.10 -1.5
2,520,602 - CCNA_02377 0.11 -0.0
2,520,603 - CCNA_02377 0.11 +1.0
2,520,603 - CCNA_02377 0.11 +3.3
2,520,615 + CCNA_02377 0.13 -2.1
2,520,659 - CCNA_02377 0.19 -0.4

Or see this region's nucleotide sequence