Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33920 and BPHYT_RS33925 are separated by 91 nucleotides BPHYT_RS33925 and BPHYT_RS33930 are separated by 1 nucleotides BPHYT_RS33930 and BPHYT_RS33935 are separated by 24 nucleotides
BPHYT_RS33920: BPHYT_RS33920 - type II citrate synthase, at 3,202,393 to 3,203,694
_RS33920
BPHYT_RS33925: BPHYT_RS33925 - hypothetical protein, at 3,203,786 to 3,204,058
_RS33925
BPHYT_RS33930: BPHYT_RS33930 - succinate dehydrogenase iron-sulfur subunit, at 3,204,060 to 3,204,764
_RS33930
BPHYT_RS33935: BPHYT_RS33935 - succinate dehydrogenase flavoprotein subunit, at 3,204,789 to 3,206,564
_RS33935
Position (kb)
3203
3204
3205 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3202.915 kb on - strand, within BPHYT_RS33920 at 3203.054 kb on + strand, within BPHYT_RS33920 at 3203.055 kb on - strand, within BPHYT_RS33920 at 3203.147 kb on + strand, within BPHYT_RS33920 at 3203.147 kb on + strand, within BPHYT_RS33920 at 3203.147 kb on + strand, within BPHYT_RS33920 at 3203.148 kb on - strand, within BPHYT_RS33920 at 3203.153 kb on + strand, within BPHYT_RS33920 at 3203.154 kb on - strand, within BPHYT_RS33920 at 3203.154 kb on - strand, within BPHYT_RS33920 at 3203.154 kb on - strand, within BPHYT_RS33920 at 3203.246 kb on + strand, within BPHYT_RS33920 at 3203.555 kb on + strand, within BPHYT_RS33920 at 3203.556 kb on - strand, within BPHYT_RS33920 at 3203.579 kb on + strand at 3203.695 kb on - strand at 3203.714 kb on + strand at 3203.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,202,915 - BPHYT_RS33920 0.40 -3.6 3,203,054 + BPHYT_RS33920 0.51 -3.9 3,203,055 - BPHYT_RS33920 0.51 -2.8 3,203,147 + BPHYT_RS33920 0.58 -2.0 3,203,147 + BPHYT_RS33920 0.58 -1.0 3,203,147 + BPHYT_RS33920 0.58 -3.2 3,203,148 - BPHYT_RS33920 0.58 -2.8 3,203,153 + BPHYT_RS33920 0.58 -3.5 3,203,154 - BPHYT_RS33920 0.58 -5.0 3,203,154 - BPHYT_RS33920 0.58 -2.9 3,203,154 - BPHYT_RS33920 0.58 -2.0 3,203,246 + BPHYT_RS33920 0.66 -4.6 3,203,555 + BPHYT_RS33920 0.89 -3.8 3,203,556 - BPHYT_RS33920 0.89 -2.4 3,203,579 + -3.6 3,203,695 - -3.6 3,203,714 + -4.1 3,203,715 - +0.1
Or see this region's nucleotide sequence