Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07755 and BPHYT_RS07760 are separated by 300 nucleotides BPHYT_RS07760 and BPHYT_RS07765 are separated by 199 nucleotides BPHYT_RS07765 and BPHYT_RS07770 are separated by 118 nucleotides
BPHYT_RS07755: BPHYT_RS07755 - diguanylate cyclase, at 1,764,633 to 1,766,447
_RS07755
BPHYT_RS07760: BPHYT_RS07760 - diguanylate phosphodiesterase, at 1,766,748 to 1,768,085
_RS07760
BPHYT_RS07765: BPHYT_RS07765 - peroxiredoxin, at 1,768,285 to 1,768,848
_RS07765
BPHYT_RS07770: BPHYT_RS07770 - hypothetical protein, at 1,768,967 to 1,769,431
_RS07770
Position (kb)
1766
1767
1768
1769 Strain fitness (log2 ratio)
-1
0
1 at 1765.837 kb on + strand, within BPHYT_RS07755 at 1766.260 kb on + strand, within BPHYT_RS07755 at 1766.260 kb on + strand, within BPHYT_RS07755 at 1766.260 kb on + strand, within BPHYT_RS07755 at 1766.260 kb on + strand, within BPHYT_RS07755 at 1766.260 kb on + strand, within BPHYT_RS07755 at 1766.261 kb on - strand, within BPHYT_RS07755 at 1766.261 kb on - strand, within BPHYT_RS07755 at 1766.261 kb on - strand, within BPHYT_RS07755 at 1766.451 kb on + strand at 1766.467 kb on + strand at 1766.468 kb on - strand at 1766.521 kb on + strand at 1766.548 kb on - strand at 1766.645 kb on - strand at 1766.672 kb on + strand at 1766.719 kb on - strand at 1766.847 kb on + strand at 1766.925 kb on - strand, within BPHYT_RS07760 at 1766.929 kb on - strand, within BPHYT_RS07760 at 1767.661 kb on - strand, within BPHYT_RS07760 at 1768.172 kb on + strand at 1768.172 kb on + strand at 1768.172 kb on + strand at 1768.172 kb on + strand at 1768.173 kb on - strand at 1768.173 kb on - strand at 1768.173 kb on - strand at 1768.173 kb on - strand at 1768.173 kb on - strand at 1768.429 kb on + strand, within BPHYT_RS07765 at 1768.430 kb on - strand, within BPHYT_RS07765 at 1768.431 kb on + strand, within BPHYT_RS07765 at 1768.432 kb on - strand, within BPHYT_RS07765 at 1768.432 kb on - strand, within BPHYT_RS07765 at 1768.435 kb on + strand, within BPHYT_RS07765 at 1768.436 kb on - strand, within BPHYT_RS07765 at 1768.436 kb on - strand, within BPHYT_RS07765 at 1768.478 kb on - strand, within BPHYT_RS07765 at 1768.478 kb on - strand, within BPHYT_RS07765 at 1768.498 kb on - strand, within BPHYT_RS07765 at 1768.549 kb on + strand, within BPHYT_RS07765 at 1768.558 kb on + strand, within BPHYT_RS07765 at 1768.694 kb on + strand, within BPHYT_RS07765 at 1768.760 kb on - strand, within BPHYT_RS07765 at 1768.800 kb on + strand at 1768.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 1,765,837 + BPHYT_RS07755 0.66 -0.2 1,766,260 + BPHYT_RS07755 0.90 +0.1 1,766,260 + BPHYT_RS07755 0.90 +1.2 1,766,260 + BPHYT_RS07755 0.90 -0.1 1,766,260 + BPHYT_RS07755 0.90 -0.3 1,766,260 + BPHYT_RS07755 0.90 +0.5 1,766,261 - BPHYT_RS07755 0.90 +0.2 1,766,261 - BPHYT_RS07755 0.90 +0.1 1,766,261 - BPHYT_RS07755 0.90 -0.1 1,766,451 + -0.4 1,766,467 + -1.4 1,766,468 - +0.1 1,766,521 + -0.1 1,766,548 - -0.1 1,766,645 - +0.3 1,766,672 + -0.1 1,766,719 - +0.1 1,766,847 + -0.4 1,766,925 - BPHYT_RS07760 0.13 -0.4 1,766,929 - BPHYT_RS07760 0.14 -0.6 1,767,661 - BPHYT_RS07760 0.68 -1.0 1,768,172 + +0.4 1,768,172 + +1.3 1,768,172 + +0.0 1,768,172 + +0.7 1,768,173 - -0.2 1,768,173 - -0.1 1,768,173 - -0.4 1,768,173 - -0.3 1,768,173 - -0.1 1,768,429 + BPHYT_RS07765 0.26 -0.9 1,768,430 - BPHYT_RS07765 0.26 +0.0 1,768,431 + BPHYT_RS07765 0.26 +0.1 1,768,432 - BPHYT_RS07765 0.26 -0.2 1,768,432 - BPHYT_RS07765 0.26 -1.2 1,768,435 + BPHYT_RS07765 0.27 +0.2 1,768,436 - BPHYT_RS07765 0.27 -0.1 1,768,436 - BPHYT_RS07765 0.27 -0.1 1,768,478 - BPHYT_RS07765 0.34 -0.4 1,768,478 - BPHYT_RS07765 0.34 -0.4 1,768,498 - BPHYT_RS07765 0.38 +0.6 1,768,549 + BPHYT_RS07765 0.47 +1.3 1,768,558 + BPHYT_RS07765 0.48 +0.2 1,768,694 + BPHYT_RS07765 0.73 -0.2 1,768,760 - BPHYT_RS07765 0.84 -0.2 1,768,800 + -0.1 1,768,875 - -0.2
Or see this region's nucleotide sequence