Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07760

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07755 and BPHYT_RS07760 are separated by 300 nucleotidesBPHYT_RS07760 and BPHYT_RS07765 are separated by 199 nucleotidesBPHYT_RS07765 and BPHYT_RS07770 are separated by 118 nucleotides BPHYT_RS07755: BPHYT_RS07755 - diguanylate cyclase, at 1,764,633 to 1,766,447 _RS07755 BPHYT_RS07760: BPHYT_RS07760 - diguanylate phosphodiesterase, at 1,766,748 to 1,768,085 _RS07760 BPHYT_RS07765: BPHYT_RS07765 - peroxiredoxin, at 1,768,285 to 1,768,848 _RS07765 BPHYT_RS07770: BPHYT_RS07770 - hypothetical protein, at 1,768,967 to 1,769,431 _RS07770 Position (kb) 1766 1767 1768 1769Strain fitness (log2 ratio) -1 0 1at 1765.837 kb on + strand, within BPHYT_RS07755at 1766.260 kb on + strand, within BPHYT_RS07755at 1766.260 kb on + strand, within BPHYT_RS07755at 1766.260 kb on + strand, within BPHYT_RS07755at 1766.260 kb on + strand, within BPHYT_RS07755at 1766.260 kb on + strand, within BPHYT_RS07755at 1766.261 kb on - strand, within BPHYT_RS07755at 1766.261 kb on - strand, within BPHYT_RS07755at 1766.261 kb on - strand, within BPHYT_RS07755at 1766.451 kb on + strandat 1766.467 kb on + strandat 1766.468 kb on - strandat 1766.521 kb on + strandat 1766.548 kb on - strandat 1766.645 kb on - strandat 1766.672 kb on + strandat 1766.719 kb on - strandat 1766.847 kb on + strandat 1766.925 kb on - strand, within BPHYT_RS07760at 1766.929 kb on - strand, within BPHYT_RS07760at 1767.661 kb on - strand, within BPHYT_RS07760at 1768.172 kb on + strandat 1768.172 kb on + strandat 1768.172 kb on + strandat 1768.172 kb on + strandat 1768.173 kb on - strandat 1768.173 kb on - strandat 1768.173 kb on - strandat 1768.173 kb on - strandat 1768.173 kb on - strandat 1768.429 kb on + strand, within BPHYT_RS07765at 1768.430 kb on - strand, within BPHYT_RS07765at 1768.431 kb on + strand, within BPHYT_RS07765at 1768.432 kb on - strand, within BPHYT_RS07765at 1768.432 kb on - strand, within BPHYT_RS07765at 1768.435 kb on + strand, within BPHYT_RS07765at 1768.436 kb on - strand, within BPHYT_RS07765at 1768.436 kb on - strand, within BPHYT_RS07765at 1768.478 kb on - strand, within BPHYT_RS07765at 1768.478 kb on - strand, within BPHYT_RS07765at 1768.498 kb on - strand, within BPHYT_RS07765at 1768.549 kb on + strand, within BPHYT_RS07765at 1768.558 kb on + strand, within BPHYT_RS07765at 1768.694 kb on + strand, within BPHYT_RS07765at 1768.760 kb on - strand, within BPHYT_RS07765at 1768.800 kb on + strandat 1768.875 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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1,765,837 + BPHYT_RS07755 0.66 -0.2
1,766,260 + BPHYT_RS07755 0.90 +0.1
1,766,260 + BPHYT_RS07755 0.90 +1.2
1,766,260 + BPHYT_RS07755 0.90 -0.1
1,766,260 + BPHYT_RS07755 0.90 -0.3
1,766,260 + BPHYT_RS07755 0.90 +0.5
1,766,261 - BPHYT_RS07755 0.90 +0.2
1,766,261 - BPHYT_RS07755 0.90 +0.1
1,766,261 - BPHYT_RS07755 0.90 -0.1
1,766,451 + -0.4
1,766,467 + -1.4
1,766,468 - +0.1
1,766,521 + -0.1
1,766,548 - -0.1
1,766,645 - +0.3
1,766,672 + -0.1
1,766,719 - +0.1
1,766,847 + -0.4
1,766,925 - BPHYT_RS07760 0.13 -0.4
1,766,929 - BPHYT_RS07760 0.14 -0.6
1,767,661 - BPHYT_RS07760 0.68 -1.0
1,768,172 + +0.4
1,768,172 + +1.3
1,768,172 + +0.0
1,768,172 + +0.7
1,768,173 - -0.2
1,768,173 - -0.1
1,768,173 - -0.4
1,768,173 - -0.3
1,768,173 - -0.1
1,768,429 + BPHYT_RS07765 0.26 -0.9
1,768,430 - BPHYT_RS07765 0.26 +0.0
1,768,431 + BPHYT_RS07765 0.26 +0.1
1,768,432 - BPHYT_RS07765 0.26 -0.2
1,768,432 - BPHYT_RS07765 0.26 -1.2
1,768,435 + BPHYT_RS07765 0.27 +0.2
1,768,436 - BPHYT_RS07765 0.27 -0.1
1,768,436 - BPHYT_RS07765 0.27 -0.1
1,768,478 - BPHYT_RS07765 0.34 -0.4
1,768,478 - BPHYT_RS07765 0.34 -0.4
1,768,498 - BPHYT_RS07765 0.38 +0.6
1,768,549 + BPHYT_RS07765 0.47 +1.3
1,768,558 + BPHYT_RS07765 0.48 +0.2
1,768,694 + BPHYT_RS07765 0.73 -0.2
1,768,760 - BPHYT_RS07765 0.84 -0.2
1,768,800 + -0.1
1,768,875 - -0.2

Or see this region's nucleotide sequence