Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0137 and SMa0139 are separated by 75 nucleotides SMa0139 and SMa0142 are separated by 446 nucleotides SMa0142 and SMa0143 are separated by 142 nucleotides SMa0143 and SMa0144 overlap by 4 nucleotides
SMa0137: SMa0137 - Diguanylate cyclase/phosphodiesterase, at 74,378 to 76,579
SMa0137
SMa0139: SMa0139 - hypothetical protein, at 76,655 to 76,975
SMa0139
SMa0142: SMa0142 - protease, at 77,422 to 78,822
SMa0142
SMa0143: SMa0143 - RNA polymerase ECF sigma factor, at 78,965 to 79,507
SMa0143
SMa0144: SMa0144 - hypothetical protein, at 79,504 to 80,289
SMa0144
Position (kb)
77
78
79 Strain fitness (log2 ratio)
-2
-1
0
1 at 76.543 kb on + strand at 76.544 kb on - strand at 76.544 kb on - strand at 76.565 kb on - strand at 77.055 kb on - strand at 77.082 kb on + strand at 77.082 kb on + strand at 77.082 kb on + strand at 77.088 kb on - strand at 77.103 kb on + strand at 77.104 kb on - strand at 77.209 kb on - strand at 77.254 kb on + strand at 77.255 kb on - strand at 77.258 kb on + strand at 77.258 kb on + strand at 77.258 kb on + strand at 77.259 kb on - strand at 77.259 kb on - strand at 77.331 kb on - strand at 77.418 kb on + strand at 77.418 kb on + strand at 77.419 kb on - strand at 77.419 kb on - strand at 77.682 kb on + strand, within SMa0142 at 77.709 kb on - strand, within SMa0142 at 77.815 kb on + strand, within SMa0142 at 77.815 kb on + strand, within SMa0142 at 77.816 kb on - strand, within SMa0142 at 77.893 kb on - strand, within SMa0142 at 78.124 kb on + strand, within SMa0142 at 78.124 kb on + strand, within SMa0142 at 78.124 kb on + strand, within SMa0142 at 78.124 kb on + strand, within SMa0142 at 78.124 kb on + strand, within SMa0142 at 78.125 kb on - strand, within SMa0142 at 78.125 kb on - strand, within SMa0142 at 78.515 kb on - strand, within SMa0142 at 78.766 kb on + strand at 78.863 kb on - strand at 78.891 kb on - strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.897 kb on - strand at 78.897 kb on - strand at 78.928 kb on + strand at 78.928 kb on + strand at 78.929 kb on - strand at 79.146 kb on + strand, within SMa0143 at 79.216 kb on + strand, within SMa0143 at 79.359 kb on + strand, within SMa0143 at 79.359 kb on + strand, within SMa0143 at 79.360 kb on - strand, within SMa0143 at 79.360 kb on - strand, within SMa0143 at 79.360 kb on - strand, within SMa0143 at 79.360 kb on - strand, within SMa0143 at 79.360 kb on - strand, within SMa0143 at 79.458 kb on + strand at 79.532 kb on + strand at 79.583 kb on + strand, within SMa0144
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 76,543 + -0.1 76,544 - +0.1 76,544 - -0.1 76,565 - -0.3 77,055 - -0.0 77,082 + -0.5 77,082 + -1.1 77,082 + +0.2 77,088 - -0.8 77,103 + -0.2 77,104 - +0.1 77,209 - +0.1 77,254 + +0.0 77,255 - -0.7 77,258 + -0.3 77,258 + +0.1 77,258 + -0.6 77,259 - -0.4 77,259 - +0.1 77,331 - +0.3 77,418 + +0.5 77,418 + +0.3 77,419 - -0.4 77,419 - +0.6 77,682 + SMa0142 0.19 -1.2 77,709 - SMa0142 0.20 -0.5 77,815 + SMa0142 0.28 -0.4 77,815 + SMa0142 0.28 -0.2 77,816 - SMa0142 0.28 -2.1 77,893 - SMa0142 0.34 +0.4 78,124 + SMa0142 0.50 +0.1 78,124 + SMa0142 0.50 -0.0 78,124 + SMa0142 0.50 +0.1 78,124 + SMa0142 0.50 -0.6 78,124 + SMa0142 0.50 -1.3 78,125 - SMa0142 0.50 -2.0 78,125 - SMa0142 0.50 -2.2 78,515 - SMa0142 0.78 -0.2 78,766 + -0.9 78,863 - +0.6 78,891 - -0.6 78,896 + -0.1 78,896 + -0.7 78,897 - -0.4 78,897 - -0.1 78,928 + +0.1 78,928 + +0.8 78,929 - +0.2 79,146 + SMa0143 0.33 -0.6 79,216 + SMa0143 0.46 -0.4 79,359 + SMa0143 0.73 -0.3 79,359 + SMa0143 0.73 -1.0 79,360 - SMa0143 0.73 +0.3 79,360 - SMa0143 0.73 +0.5 79,360 - SMa0143 0.73 -0.2 79,360 - SMa0143 0.73 -1.0 79,360 - SMa0143 0.73 +0.2 79,458 + +0.2 79,532 + -1.3 79,583 + SMa0144 0.10 -1.2
Or see this region's nucleotide sequence