Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21646

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21645 and SM_b21646 overlap by 4 nucleotidesSM_b21646 and SM_b21647 are separated by 117 nucleotides SM_b21645: SM_b21645 - ABC transporter for D-Raffinose, permease component 1 (from data), at 1,674,101 to 1,675,228 _b21645 SM_b21646: SM_b21646 - ABC transporter for D-Raffinose, permease component 2 (from data), at 1,675,225 to 1,676,238 _b21646 SM_b21647: SM_b21647 - ABC transporter for D-Raffinose, periplasmic substrate-binding protein (from data), at 1,676,356 to 1,678,437 _b21647 Position (kb) 1675 1676 1677Strain fitness (log2 ratio) -2 -1 0 1 2at 1674.377 kb on + strand, within SM_b21645at 1674.424 kb on - strand, within SM_b21645at 1674.424 kb on - strand, within SM_b21645at 1674.791 kb on - strand, within SM_b21645at 1674.846 kb on + strand, within SM_b21645at 1674.847 kb on - strand, within SM_b21645at 1674.891 kb on + strand, within SM_b21645at 1674.954 kb on + strand, within SM_b21645at 1674.955 kb on - strand, within SM_b21645at 1675.158 kb on + strandat 1675.159 kb on - strandat 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.233 kb on - strandat 1675.234 kb on + strandat 1675.235 kb on - strandat 1675.346 kb on + strand, within SM_b21646at 1675.346 kb on + strand, within SM_b21646at 1675.346 kb on + strand, within SM_b21646at 1675.346 kb on + strand, within SM_b21646at 1675.439 kb on + strand, within SM_b21646at 1675.440 kb on - strand, within SM_b21646at 1675.460 kb on + strand, within SM_b21646at 1675.460 kb on + strand, within SM_b21646at 1675.460 kb on + strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.550 kb on + strand, within SM_b21646at 1675.596 kb on + strand, within SM_b21646at 1675.597 kb on - strand, within SM_b21646at 1675.597 kb on - strand, within SM_b21646at 1675.597 kb on - strand, within SM_b21646at 1675.601 kb on + strand, within SM_b21646at 1675.750 kb on - strand, within SM_b21646at 1675.750 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.804 kb on + strand, within SM_b21646at 1675.835 kb on + strand, within SM_b21646at 1675.897 kb on + strand, within SM_b21646at 1675.898 kb on - strand, within SM_b21646at 1675.962 kb on - strand, within SM_b21646at 1675.964 kb on + strand, within SM_b21646at 1676.037 kb on + strand, within SM_b21646at 1676.060 kb on + strand, within SM_b21646at 1676.061 kb on - strand, within SM_b21646at 1676.138 kb on + strandat 1676.138 kb on + strandat 1676.139 kb on - strandat 1676.213 kb on - strandat 1676.415 kb on - strandat 1676.757 kb on + strand, within SM_b21647at 1676.758 kb on - strand, within SM_b21647at 1676.758 kb on - strand, within SM_b21647at 1676.823 kb on - strand, within SM_b21647at 1676.931 kb on - strand, within SM_b21647at 1677.071 kb on + strand, within SM_b21647at 1677.072 kb on - strand, within SM_b21647at 1677.074 kb on + strand, within SM_b21647at 1677.074 kb on + strand, within SM_b21647at 1677.075 kb on - strand, within SM_b21647at 1677.075 kb on - strand, within SM_b21647at 1677.075 kb on - strand, within SM_b21647at 1677.096 kb on - strand, within SM_b21647at 1677.096 kb on - strand, within SM_b21647at 1677.129 kb on - strand, within SM_b21647

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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1,674,377 + SM_b21645 0.24 -0.5
1,674,424 - SM_b21645 0.29 +0.1
1,674,424 - SM_b21645 0.29 -0.9
1,674,791 - SM_b21645 0.61 -0.6
1,674,846 + SM_b21645 0.66 +0.4
1,674,847 - SM_b21645 0.66 -0.9
1,674,891 + SM_b21645 0.70 -2.2
1,674,954 + SM_b21645 0.76 -0.3
1,674,955 - SM_b21645 0.76 -0.2
1,675,158 + -0.7
1,675,159 - -0.5
1,675,232 + -1.3
1,675,232 + -0.4
1,675,232 + +1.4
1,675,233 - -0.1
1,675,234 + -0.1
1,675,235 - +0.0
1,675,346 + SM_b21646 0.12 -0.4
1,675,346 + SM_b21646 0.12 -0.2
1,675,346 + SM_b21646 0.12 +0.4
1,675,346 + SM_b21646 0.12 +0.6
1,675,439 + SM_b21646 0.21 -0.0
1,675,440 - SM_b21646 0.21 +0.4
1,675,460 + SM_b21646 0.23 -0.2
1,675,460 + SM_b21646 0.23 +0.3
1,675,460 + SM_b21646 0.23 -0.9
1,675,461 - SM_b21646 0.23 -0.4
1,675,461 - SM_b21646 0.23 -0.1
1,675,461 - SM_b21646 0.23 -0.3
1,675,461 - SM_b21646 0.23 -0.4
1,675,550 + SM_b21646 0.32 -0.6
1,675,596 + SM_b21646 0.37 -1.3
1,675,597 - SM_b21646 0.37 -1.0
1,675,597 - SM_b21646 0.37 +0.9
1,675,597 - SM_b21646 0.37 -0.9
1,675,601 + SM_b21646 0.37 -0.8
1,675,750 - SM_b21646 0.52 -0.5
1,675,750 - SM_b21646 0.52 -1.0
1,675,752 - SM_b21646 0.52 -0.3
1,675,752 - SM_b21646 0.52 +0.4
1,675,752 - SM_b21646 0.52 +2.0
1,675,752 - SM_b21646 0.52 -0.6
1,675,804 + SM_b21646 0.57 -0.4
1,675,835 + SM_b21646 0.60 +1.6
1,675,897 + SM_b21646 0.66 -0.1
1,675,898 - SM_b21646 0.66 -0.8
1,675,962 - SM_b21646 0.73 +0.0
1,675,964 + SM_b21646 0.73 -0.4
1,676,037 + SM_b21646 0.80 -0.6
1,676,060 + SM_b21646 0.82 -0.2
1,676,061 - SM_b21646 0.82 -0.6
1,676,138 + -0.2
1,676,138 + +0.4
1,676,139 - -1.2
1,676,213 - +0.0
1,676,415 - -0.2
1,676,757 + SM_b21647 0.19 -0.1
1,676,758 - SM_b21647 0.19 -0.1
1,676,758 - SM_b21647 0.19 -0.9
1,676,823 - SM_b21647 0.22 -0.7
1,676,931 - SM_b21647 0.28 +0.2
1,677,071 + SM_b21647 0.34 +0.2
1,677,072 - SM_b21647 0.34 +0.0
1,677,074 + SM_b21647 0.34 -1.3
1,677,074 + SM_b21647 0.34 -0.3
1,677,075 - SM_b21647 0.35 -0.0
1,677,075 - SM_b21647 0.35 -0.1
1,677,075 - SM_b21647 0.35 +0.6
1,677,096 - SM_b21647 0.36 -0.1
1,677,096 - SM_b21647 0.36 +2.4
1,677,129 - SM_b21647 0.37 -0.4

Or see this region's nucleotide sequence