Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21262

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21261 and SM_b21262 are separated by 1 nucleotidesSM_b21262 and SM_b21263 are separated by 80 nucleotides SM_b21261: SM_b21261 - mureinpeptideoligopeptide ABC transporter substrate-binding protein precursor, at 832,991 to 834,892 _b21261 SM_b21262: SM_b21262 - mureinpeptideoligopeptide ABC transporter permease, at 834,894 to 835,892 _b21262 SM_b21263: SM_b21263 - mureinpeptideoligopeptide ABC transporter permease, at 835,973 to 837,064 _b21263 Position (kb) 834 835 836Strain fitness (log2 ratio) -2 -1 0 1 2 3at 833.928 kb on - strand, within SM_b21261at 833.948 kb on + strand, within SM_b21261at 833.948 kb on + strand, within SM_b21261at 833.948 kb on + strand, within SM_b21261at 833.949 kb on - strand, within SM_b21261at 833.949 kb on - strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.950 kb on + strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.951 kb on - strand, within SM_b21261at 833.954 kb on + strand, within SM_b21261at 833.954 kb on + strand, within SM_b21261at 833.955 kb on - strand, within SM_b21261at 834.147 kb on - strand, within SM_b21261at 834.301 kb on + strand, within SM_b21261at 834.392 kb on + strand, within SM_b21261at 834.443 kb on - strand, within SM_b21261at 834.474 kb on + strand, within SM_b21261at 834.474 kb on + strand, within SM_b21261at 834.590 kb on + strand, within SM_b21261at 834.590 kb on + strand, within SM_b21261at 834.590 kb on + strand, within SM_b21261at 834.590 kb on + strand, within SM_b21261at 834.590 kb on + strand, within SM_b21261at 834.590 kb on + strand, within SM_b21261at 834.590 kb on + strand, within SM_b21261at 834.591 kb on - strand, within SM_b21261at 834.591 kb on - strand, within SM_b21261at 834.591 kb on - strandat 834.591 kb on - strand, within SM_b21261at 834.591 kb on - strand, within SM_b21261at 834.592 kb on + strand, within SM_b21261at 834.592 kb on + strand, within SM_b21261at 834.593 kb on - strand, within SM_b21261at 834.657 kb on + strand, within SM_b21261at 834.657 kb on + strand, within SM_b21261at 834.725 kb on + strandat 834.725 kb on + strandat 834.725 kb on + strandat 834.726 kb on - strandat 834.726 kb on - strandat 834.821 kb on + strandat 834.821 kb on + strandat 834.821 kb on + strandat 834.854 kb on + strandat 834.903 kb on + strandat 834.904 kb on - strandat 835.005 kb on + strand, within SM_b21262at 835.006 kb on - strand, within SM_b21262at 835.006 kb on - strand, within SM_b21262at 835.044 kb on - strand, within SM_b21262at 835.074 kb on + strand, within SM_b21262at 835.074 kb on + strand, within SM_b21262at 835.075 kb on - strand, within SM_b21262at 835.075 kb on - strand, within SM_b21262at 835.075 kb on - strand, within SM_b21262at 835.075 kb on - strand, within SM_b21262at 835.105 kb on - strand, within SM_b21262at 835.266 kb on + strand, within SM_b21262at 835.266 kb on + strand, within SM_b21262at 835.267 kb on - strand, within SM_b21262at 835.267 kb on - strand, within SM_b21262at 835.284 kb on + strand, within SM_b21262at 835.299 kb on + strand, within SM_b21262at 835.368 kb on + strand, within SM_b21262at 835.368 kb on + strand, within SM_b21262at 835.368 kb on + strand, within SM_b21262at 835.368 kb on + strand, within SM_b21262at 835.369 kb on - strand, within SM_b21262at 835.369 kb on - strand, within SM_b21262at 835.369 kb on - strand, within SM_b21262at 835.422 kb on + strand, within SM_b21262at 835.422 kb on + strand, within SM_b21262at 835.423 kb on - strand, within SM_b21262at 835.473 kb on - strand, within SM_b21262at 835.473 kb on - strand, within SM_b21262at 835.473 kb on - strand, within SM_b21262at 835.508 kb on + strand, within SM_b21262at 835.566 kb on + strand, within SM_b21262at 835.566 kb on + strand, within SM_b21262at 835.566 kb on + strand, within SM_b21262at 835.770 kb on + strand, within SM_b21262at 835.770 kb on + strand, within SM_b21262at 835.770 kb on + strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.932 kb on - strandat 835.958 kb on + strandat 836.085 kb on - strand, within SM_b21263at 836.085 kb on - strand, within SM_b21263at 836.120 kb on + strand, within SM_b21263at 836.154 kb on - strand, within SM_b21263at 836.154 kb on - strand, within SM_b21263at 836.154 kb on - strand, within SM_b21263at 836.269 kb on + strand, within SM_b21263at 836.270 kb on - strand, within SM_b21263at 836.645 kb on + strand, within SM_b21263at 836.646 kb on - strand, within SM_b21263at 836.656 kb on - strand, within SM_b21263at 836.667 kb on + strand, within SM_b21263at 836.738 kb on + strand, within SM_b21263at 836.738 kb on + strand, within SM_b21263at 836.738 kb on + strand, within SM_b21263

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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833,928 - SM_b21261 0.49 -0.2
833,948 + SM_b21261 0.50 -0.4
833,948 + SM_b21261 0.50 -0.3
833,948 + SM_b21261 0.50 -0.8
833,949 - SM_b21261 0.50 +0.9
833,949 - SM_b21261 0.50 -1.0
833,950 + SM_b21261 0.50 +1.7
833,950 + SM_b21261 0.50 -0.7
833,950 + SM_b21261 0.50 -0.9
833,950 + SM_b21261 0.50 +0.6
833,950 + SM_b21261 0.50 -1.1
833,950 + SM_b21261 0.50 -1.1
833,951 - SM_b21261 0.50 -0.2
833,951 - SM_b21261 0.50 -0.6
833,951 - SM_b21261 0.50 -0.9
833,951 - SM_b21261 0.50 -1.5
833,951 - SM_b21261 0.50 -0.5
833,951 - SM_b21261 0.50 -0.1
833,951 - SM_b21261 0.50 +0.1
833,951 - SM_b21261 0.50 -0.4
833,951 - SM_b21261 0.50 -0.9
833,954 + SM_b21261 0.51 -0.6
833,954 + SM_b21261 0.51 +0.1
833,955 - SM_b21261 0.51 -0.8
834,147 - SM_b21261 0.61 -0.3
834,301 + SM_b21261 0.69 -1.1
834,392 + SM_b21261 0.74 -0.7
834,443 - SM_b21261 0.76 -0.1
834,474 + SM_b21261 0.78 -0.0
834,474 + SM_b21261 0.78 -0.6
834,590 + SM_b21261 0.84 +0.2
834,590 + SM_b21261 0.84 +0.5
834,590 + SM_b21261 0.84 -0.4
834,590 + SM_b21261 0.84 -0.2
834,590 + SM_b21261 0.84 -0.5
834,590 + SM_b21261 0.84 -0.8
834,590 + SM_b21261 0.84 -0.5
834,591 - SM_b21261 0.84 -0.0
834,591 - SM_b21261 0.84 -1.2
834,591 - +0.9
834,591 - SM_b21261 0.84 +0.8
834,591 - SM_b21261 0.84 -0.5
834,592 + SM_b21261 0.84 -0.3
834,592 + SM_b21261 0.84 +1.0
834,593 - SM_b21261 0.84 +0.5
834,657 + SM_b21261 0.88 -0.3
834,657 + SM_b21261 0.88 -0.3
834,725 + +0.2
834,725 + -0.8
834,725 + -1.6
834,726 - +0.1
834,726 - +0.4
834,821 + +0.0
834,821 + -0.4
834,821 + -1.1
834,854 + -0.5
834,903 + -2.1
834,904 - +0.1
835,005 + SM_b21262 0.11 +0.6
835,006 - SM_b21262 0.11 -0.2
835,006 - SM_b21262 0.11 +0.2
835,044 - SM_b21262 0.15 -0.0
835,074 + SM_b21262 0.18 +0.3
835,074 + SM_b21262 0.18 +0.2
835,075 - SM_b21262 0.18 +0.5
835,075 - SM_b21262 0.18 +0.1
835,075 - SM_b21262 0.18 +0.5
835,075 - SM_b21262 0.18 +2.3
835,105 - SM_b21262 0.21 +0.5
835,266 + SM_b21262 0.37 +0.9
835,266 + SM_b21262 0.37 -0.1
835,267 - SM_b21262 0.37 +0.6
835,267 - SM_b21262 0.37 +0.6
835,284 + SM_b21262 0.39 -0.1
835,299 + SM_b21262 0.41 +0.2
835,368 + SM_b21262 0.47 +0.5
835,368 + SM_b21262 0.47 +0.3
835,368 + SM_b21262 0.47 +0.2
835,368 + SM_b21262 0.47 +0.5
835,369 - SM_b21262 0.48 +1.0
835,369 - SM_b21262 0.48 +0.3
835,369 - SM_b21262 0.48 +0.7
835,422 + SM_b21262 0.53 +0.2
835,422 + SM_b21262 0.53 +2.9
835,423 - SM_b21262 0.53 +0.5
835,473 - SM_b21262 0.58 +0.5
835,473 - SM_b21262 0.58 -0.2
835,473 - SM_b21262 0.58 +0.3
835,508 + SM_b21262 0.61 +0.1
835,566 + SM_b21262 0.67 +0.4
835,566 + SM_b21262 0.67 +0.2
835,566 + SM_b21262 0.67 +0.3
835,770 + SM_b21262 0.88 -0.0
835,770 + SM_b21262 0.88 +0.1
835,770 + SM_b21262 0.88 +0.5
835,771 - SM_b21262 0.88 +0.5
835,771 - SM_b21262 0.88 +0.4
835,771 - SM_b21262 0.88 +1.0
835,771 - SM_b21262 0.88 +0.2
835,771 - SM_b21262 0.88 -0.2
835,771 - SM_b21262 0.88 +0.7
835,771 - SM_b21262 0.88 +0.1
835,932 - +0.4
835,958 + +0.1
836,085 - SM_b21263 0.10 +1.1
836,085 - SM_b21263 0.10 +0.0
836,120 + SM_b21263 0.13 +0.5
836,154 - SM_b21263 0.17 +0.6
836,154 - SM_b21263 0.17 +0.3
836,154 - SM_b21263 0.17 +0.7
836,269 + SM_b21263 0.27 +0.5
836,270 - SM_b21263 0.27 +0.5
836,645 + SM_b21263 0.62 -0.4
836,646 - SM_b21263 0.62 +0.7
836,656 - SM_b21263 0.63 +0.1
836,667 + SM_b21263 0.64 +0.5
836,738 + SM_b21263 0.70 +1.0
836,738 + SM_b21263 0.70 +1.0
836,738 + SM_b21263 0.70 +0.1

Or see this region's nucleotide sequence