Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20587 and SM_b20588 are separated by 13 nucleotides SM_b20588 and SM_b20589 overlap by 1 nucleotides SM_b20589 and SM_b20590 are separated by 182 nucleotides SM_b20590 and SM_b20591 are separated by 61 nucleotides SM_b20591 and SM_b20592 are separated by 25 nucleotides
SM_b20587: SM_b20587 - CoA-transferase subunit A protein, at 1,602,338 to 1,603,198
_b20587
SM_b20588: SM_b20588 - CoA-transferase subunit B protein, at 1,603,212 to 1,603,997
_b20588
SM_b20589: SM_b20589 - beta-ketoadipyl CoA thiolase, at 1,603,997 to 1,605,199
_b20589
SM_b20590: SM_b20590 - acylphosphatase, at 1,605,382 to 1,605,705
_b20590
SM_b20591: SM_b20591 - hypothetical protein, at 1,605,767 to 1,606,063
_b20591
SM_b20592: SM_b20592 - RNA polymerase sigma factor, at 1,606,089 to 1,606,772
_b20592
Position (kb)
1603
1604
1605
1606 Strain fitness (log2 ratio)
-1
0
1 at 1603.034 kb on + strand, within SM_b20587 at 1603.035 kb on - strand, within SM_b20587 at 1603.046 kb on + strand, within SM_b20587 at 1603.046 kb on + strand, within SM_b20587 at 1603.047 kb on - strand, within SM_b20587 at 1603.049 kb on + strand, within SM_b20587 at 1603.050 kb on - strand, within SM_b20587 at 1603.070 kb on + strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.359 kb on + strand, within SM_b20588 at 1603.359 kb on + strand, within SM_b20588 at 1603.360 kb on - strand, within SM_b20588 at 1603.423 kb on + strand, within SM_b20588 at 1603.424 kb on - strand, within SM_b20588 at 1603.424 kb on - strand, within SM_b20588 at 1603.424 kb on - strand, within SM_b20588 at 1603.424 kb on - strand, within SM_b20588 at 1603.424 kb on - strand, within SM_b20588 at 1603.470 kb on + strand, within SM_b20588 at 1603.545 kb on - strand, within SM_b20588 at 1603.563 kb on + strand, within SM_b20588 at 1603.564 kb on - strand, within SM_b20588 at 1604.009 kb on + strand at 1604.011 kb on + strand at 1604.011 kb on + strand at 1604.011 kb on + strand at 1604.012 kb on - strand at 1604.012 kb on - strand at 1604.012 kb on - strand at 1604.021 kb on + strand at 1604.021 kb on + strand at 1604.023 kb on + strand at 1604.023 kb on + strand at 1604.024 kb on - strand at 1604.468 kb on + strand, within SM_b20589 at 1604.469 kb on - strand, within SM_b20589 at 1604.516 kb on + strand, within SM_b20589 at 1604.516 kb on + strand, within SM_b20589 at 1604.517 kb on - strand, within SM_b20589 at 1605.244 kb on + strand at 1605.245 kb on - strand at 1605.245 kb on - strand at 1605.245 kb on - strand at 1605.245 kb on - strand at 1605.393 kb on + strand at 1605.765 kb on + strand at 1605.765 kb on + strand at 1605.819 kb on - strand, within SM_b20591 at 1605.819 kb on - strand at 1605.821 kb on + strand, within SM_b20591 at 1605.821 kb on + strand, within SM_b20591 at 1605.822 kb on - strand, within SM_b20591 at 1605.823 kb on + strand, within SM_b20591 at 1605.823 kb on + strand at 1605.824 kb on - strand, within SM_b20591 at 1605.824 kb on - strand, within SM_b20591 at 1605.991 kb on + strand, within SM_b20591 at 1605.991 kb on + strand, within SM_b20591 at 1605.992 kb on - strand, within SM_b20591 at 1606.010 kb on - strand, within SM_b20591 at 1606.035 kb on - strand at 1606.035 kb on - strand at 1606.056 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 1,603,034 + SM_b20587 0.81 -0.3 1,603,035 - SM_b20587 0.81 +0.4 1,603,046 + SM_b20587 0.82 +0.4 1,603,046 + SM_b20587 0.82 -0.2 1,603,047 - SM_b20587 0.82 +0.2 1,603,049 + SM_b20587 0.83 -0.0 1,603,050 - SM_b20587 0.83 -0.2 1,603,070 + SM_b20587 0.85 -1.0 1,603,071 - SM_b20587 0.85 -0.3 1,603,071 - SM_b20587 0.85 -0.5 1,603,071 - SM_b20587 0.85 -0.1 1,603,071 - SM_b20587 0.85 +0.9 1,603,359 + SM_b20588 0.19 -0.3 1,603,359 + SM_b20588 0.19 +1.7 1,603,360 - SM_b20588 0.19 -0.1 1,603,423 + SM_b20588 0.27 +1.5 1,603,424 - SM_b20588 0.27 +0.5 1,603,424 - SM_b20588 0.27 -1.3 1,603,424 - SM_b20588 0.27 -0.0 1,603,424 - SM_b20588 0.27 -0.2 1,603,424 - SM_b20588 0.27 -0.6 1,603,470 + SM_b20588 0.33 -0.2 1,603,545 - SM_b20588 0.42 -0.2 1,603,563 + SM_b20588 0.45 +1.3 1,603,564 - SM_b20588 0.45 -1.1 1,604,009 + +0.1 1,604,011 + +0.0 1,604,011 + -0.4 1,604,011 + +0.6 1,604,012 - +0.4 1,604,012 - -0.7 1,604,012 - -0.4 1,604,021 + -0.1 1,604,021 + +1.6 1,604,023 + -1.3 1,604,023 + -0.5 1,604,024 - -0.5 1,604,468 + SM_b20589 0.39 -0.6 1,604,469 - SM_b20589 0.39 +0.1 1,604,516 + SM_b20589 0.43 -0.2 1,604,516 + SM_b20589 0.43 -0.4 1,604,517 - SM_b20589 0.43 -0.7 1,605,244 + +0.1 1,605,245 - -1.4 1,605,245 - +0.4 1,605,245 - -0.4 1,605,245 - +0.3 1,605,393 + +0.6 1,605,765 + -0.8 1,605,765 + +0.0 1,605,819 - SM_b20591 0.18 +0.2 1,605,819 - +0.7 1,605,821 + SM_b20591 0.18 -0.2 1,605,821 + SM_b20591 0.18 -0.2 1,605,822 - SM_b20591 0.19 -0.4 1,605,823 + SM_b20591 0.19 +0.1 1,605,823 + +0.0 1,605,824 - SM_b20591 0.19 +0.0 1,605,824 - SM_b20591 0.19 -0.0 1,605,991 + SM_b20591 0.75 +0.6 1,605,991 + SM_b20591 0.75 -0.0 1,605,992 - SM_b20591 0.76 -0.3 1,606,010 - SM_b20591 0.82 -0.2 1,606,035 - +0.3 1,606,035 - +0.0 1,606,056 + -0.5
Or see this region's nucleotide sequence