Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20246

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20245 and SM_b20246 are separated by 333 nucleotidesSM_b20246 and SM_b20247 are separated by 4 nucleotides SM_b20245: SM_b20245 - UDP-glucose 4-epimerase, at 249,858 to 250,964 _b20245 SM_b20246: SM_b20246 - oxidoreductase, at 251,298 to 252,290 _b20246 SM_b20247: SM_b20247 - oxidoreductase, at 252,295 to 253,308 _b20247 Position (kb) 251 252 253Strain fitness (log2 ratio) -1 0 1 2at 250.305 kb on - strand, within SM_b20245at 250.307 kb on - strand, within SM_b20245at 250.307 kb on - strand, within SM_b20245at 250.389 kb on + strand, within SM_b20245at 250.389 kb on + strand, within SM_b20245at 250.391 kb on + strand, within SM_b20245at 250.391 kb on + strand, within SM_b20245at 250.392 kb on - strand, within SM_b20245at 250.414 kb on + strand, within SM_b20245at 250.415 kb on - strand, within SM_b20245at 250.415 kb on - strand, within SM_b20245at 250.430 kb on - strand, within SM_b20245at 250.571 kb on + strand, within SM_b20245at 250.571 kb on + strand, within SM_b20245at 250.571 kb on + strand, within SM_b20245at 250.572 kb on - strand, within SM_b20245at 250.580 kb on - strand, within SM_b20245at 250.580 kb on - strand, within SM_b20245at 250.580 kb on - strand, within SM_b20245at 250.794 kb on + strand, within SM_b20245at 250.794 kb on + strand, within SM_b20245at 250.794 kb on + strand, within SM_b20245at 250.795 kb on - strand, within SM_b20245at 250.888 kb on + strandat 250.888 kb on + strandat 250.888 kb on + strandat 250.888 kb on + strandat 250.889 kb on - strandat 250.889 kb on - strandat 250.889 kb on - strandat 250.889 kb on - strandat 250.953 kb on + strandat 250.953 kb on + strandat 250.964 kb on + strandat 250.964 kb on + strandat 250.965 kb on - strandat 250.994 kb on - strandat 251.102 kb on - strandat 251.312 kb on - strandat 251.312 kb on - strandat 251.371 kb on + strandat 251.452 kb on + strand, within SM_b20246at 251.592 kb on + strand, within SM_b20246at 251.593 kb on - strand, within SM_b20246at 251.601 kb on + strand, within SM_b20246at 251.602 kb on - strand, within SM_b20246at 251.813 kb on - strand, within SM_b20246at 252.236 kb on + strandat 252.697 kb on + strand, within SM_b20247at 252.698 kb on - strand, within SM_b20247at 252.787 kb on + strand, within SM_b20247at 252.879 kb on - strand, within SM_b20247at 252.879 kb on - strand, within SM_b20247at 252.879 kb on - strand, within SM_b20247at 252.973 kb on + strand, within SM_b20247at 253.075 kb on + strand, within SM_b20247at 253.075 kb on + strand, within SM_b20247at 253.076 kb on - strand, within SM_b20247at 253.101 kb on + strand, within SM_b20247at 253.121 kb on - strand, within SM_b20247

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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250,305 - SM_b20245 0.40 +1.3
250,307 - SM_b20245 0.41 +0.2
250,307 - SM_b20245 0.41 +2.3
250,389 + SM_b20245 0.48 +0.1
250,389 + SM_b20245 0.48 -0.5
250,391 + SM_b20245 0.48 -0.4
250,391 + SM_b20245 0.48 +0.3
250,392 - SM_b20245 0.48 -0.3
250,414 + SM_b20245 0.50 +0.1
250,415 - SM_b20245 0.50 -0.2
250,415 - SM_b20245 0.50 -0.3
250,430 - SM_b20245 0.52 -0.3
250,571 + SM_b20245 0.64 -0.0
250,571 + SM_b20245 0.64 -0.3
250,571 + SM_b20245 0.64 -0.3
250,572 - SM_b20245 0.64 -1.4
250,580 - SM_b20245 0.65 -0.2
250,580 - SM_b20245 0.65 -0.8
250,580 - SM_b20245 0.65 +0.2
250,794 + SM_b20245 0.85 -0.1
250,794 + SM_b20245 0.85 +0.5
250,794 + SM_b20245 0.85 -0.3
250,795 - SM_b20245 0.85 -0.0
250,888 + -0.0
250,888 + -0.1
250,888 + -1.0
250,888 + +0.9
250,889 - -0.7
250,889 - +0.9
250,889 - -0.0
250,889 - -0.5
250,953 + -0.3
250,953 + -0.3
250,964 + +1.3
250,964 + +0.5
250,965 - -0.3
250,994 - -0.5
251,102 - -0.8
251,312 - +0.3
251,312 - -0.5
251,371 + +2.0
251,452 + SM_b20246 0.16 -1.0
251,592 + SM_b20246 0.30 +0.5
251,593 - SM_b20246 0.30 -0.1
251,601 + SM_b20246 0.31 +0.5
251,602 - SM_b20246 0.31 +1.1
251,813 - SM_b20246 0.52 -0.6
252,236 + -0.1
252,697 + SM_b20247 0.40 -0.1
252,698 - SM_b20247 0.40 +0.4
252,787 + SM_b20247 0.49 -0.6
252,879 - SM_b20247 0.58 -0.4
252,879 - SM_b20247 0.58 -0.3
252,879 - SM_b20247 0.58 -0.1
252,973 + SM_b20247 0.67 +0.4
253,075 + SM_b20247 0.77 -0.3
253,075 + SM_b20247 0.77 -0.3
253,076 - SM_b20247 0.77 +1.6
253,101 + SM_b20247 0.79 -0.5
253,121 - SM_b20247 0.81 -0.1

Or see this region's nucleotide sequence