Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4692 and Psyr_4693 overlap by 4 nucleotides Psyr_4693 and Psyr_4694 overlap by 4 nucleotides Psyr_4694 and Psyr_4695 overlap by 1 nucleotides
Psyr_4692: Psyr_4692 - ABC transporter, at 5,560,754 to 5,561,785
_4692
Psyr_4693: Psyr_4693 - Binding-protein-dependent transport systems inner membrane component, at 5,561,782 to 5,562,576
_4693
Psyr_4694: Psyr_4694 - Binding-protein-dependent transport systems inner membrane component, at 5,562,573 to 5,563,442
_4694
Psyr_4695: Psyr_4695 - extracellular solute-binding protein, family 1, at 5,563,442 to 5,564,443
_4695
Position (kb) 5561
5562
5563 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5560.819 kb on - strand at 5560.972 kb on - strand, within Psyr_4692 at 5560.972 kb on - strand, within Psyr_4692 at 5560.986 kb on - strand, within Psyr_4692 at 5561.112 kb on + strand, within Psyr_4692 at 5561.113 kb on - strand, within Psyr_4692 at 5561.113 kb on - strand, within Psyr_4692 at 5561.446 kb on + strand, within Psyr_4692 at 5561.446 kb on + strand, within Psyr_4692 at 5561.491 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.720 kb on + strand at 5561.720 kb on + strand at 5561.721 kb on - strand at 5561.870 kb on + strand, within Psyr_4693 at 5561.870 kb on + strand, within Psyr_4693 at 5561.870 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.031 kb on - strand, within Psyr_4693 at 5562.218 kb on + strand, within Psyr_4693 at 5562.326 kb on + strand, within Psyr_4693 at 5562.408 kb on - strand, within Psyr_4693 at 5562.468 kb on - strand, within Psyr_4693 at 5562.593 kb on + strand at 5562.602 kb on + strand at 5562.602 kb on + strand at 5562.603 kb on - strand at 5562.682 kb on + strand, within Psyr_4694 at 5562.700 kb on + strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.943 kb on + strand, within Psyr_4694 at 5562.943 kb on + strand, within Psyr_4694 at 5562.943 kb on + strand, within Psyr_4694 at 5562.943 kb on + strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5563.231 kb on + strand, within Psyr_4694 at 5563.231 kb on + strand, within Psyr_4694 at 5563.232 kb on - strand, within Psyr_4694 at 5563.232 kb on - strand, within Psyr_4694 at 5563.281 kb on - strand, within Psyr_4694 at 5563.338 kb on + strand, within Psyr_4694 at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.461 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 5,560,819 - +1.3 5,560,972 - Psyr_4692 0.21 +1.5 5,560,972 - Psyr_4692 0.21 +0.8 5,560,986 - Psyr_4692 0.22 -0.4 5,561,112 + Psyr_4692 0.35 -0.0 5,561,113 - Psyr_4692 0.35 +0.2 5,561,113 - Psyr_4692 0.35 +0.5 5,561,446 + Psyr_4692 0.67 -0.5 5,561,446 + Psyr_4692 0.67 -0.2 5,561,491 + Psyr_4692 0.71 +0.6 5,561,526 + Psyr_4692 0.75 +0.2 5,561,526 + Psyr_4692 0.75 +1.0 5,561,526 + Psyr_4692 0.75 -0.3 5,561,527 - Psyr_4692 0.75 -0.4 5,561,527 - Psyr_4692 0.75 +0.7 5,561,527 - Psyr_4692 0.75 -0.7 5,561,720 + -0.3 5,561,720 + -0.5 5,561,721 - +0.7 5,561,870 + Psyr_4693 0.11 -1.6 5,561,870 + Psyr_4693 0.11 +1.0 5,561,870 + Psyr_4693 0.11 -0.7 5,561,903 + Psyr_4693 0.15 -0.8 5,561,903 + Psyr_4693 0.15 -1.2 5,561,903 + Psyr_4693 0.15 -0.1 5,561,903 + Psyr_4693 0.15 +0.1 5,562,030 + Psyr_4693 0.31 -0.2 5,562,030 + Psyr_4693 0.31 +1.0 5,562,030 + Psyr_4693 0.31 -2.5 5,562,031 - Psyr_4693 0.31 -1.0 5,562,218 + Psyr_4693 0.55 +0.3 5,562,326 + Psyr_4693 0.68 -0.7 5,562,408 - Psyr_4693 0.79 -1.0 5,562,468 - Psyr_4693 0.86 -0.9 5,562,593 + -0.1 5,562,602 + -0.7 5,562,602 + +0.2 5,562,603 - +1.4 5,562,682 + Psyr_4694 0.13 -0.0 5,562,700 + Psyr_4694 0.15 +0.1 5,562,701 - Psyr_4694 0.15 +0.2 5,562,701 - Psyr_4694 0.15 +1.0 5,562,701 - Psyr_4694 0.15 +0.3 5,562,701 - Psyr_4694 0.15 -0.5 5,562,701 - Psyr_4694 0.15 +0.7 5,562,701 - Psyr_4694 0.15 +0.4 5,562,943 + Psyr_4694 0.43 +0.1 5,562,943 + Psyr_4694 0.43 -0.9 5,562,943 + Psyr_4694 0.43 +3.0 5,562,943 + Psyr_4694 0.43 -0.5 5,562,944 - Psyr_4694 0.43 -0.3 5,562,944 - Psyr_4694 0.43 +1.0 5,562,944 - Psyr_4694 0.43 +0.1 5,562,944 - Psyr_4694 0.43 +0.6 5,562,944 - Psyr_4694 0.43 -0.3 5,562,944 - Psyr_4694 0.43 -0.0 5,562,944 - Psyr_4694 0.43 -0.3 5,562,944 - Psyr_4694 0.43 +0.0 5,563,231 + Psyr_4694 0.76 +0.7 5,563,231 + Psyr_4694 0.76 +0.2 5,563,232 - Psyr_4694 0.76 -1.8 5,563,232 - Psyr_4694 0.76 -0.1 5,563,281 - Psyr_4694 0.81 -0.7 5,563,338 + Psyr_4694 0.88 -0.6 5,563,443 + -1.1 5,563,443 + -0.1 5,563,443 + +1.6 5,563,443 + -0.6 5,563,443 + +0.4 5,563,443 + -0.6 5,563,443 + +1.7 5,563,444 - -1.3 5,563,444 - +1.1 5,563,444 - -0.2 5,563,444 - -1.6 5,563,444 - +0.4 5,563,444 - +2.0 5,563,444 - +1.0 5,563,444 - +0.6 5,563,461 + -0.9
Or see this region's nucleotide sequence