Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4595 and Psyr_4596 are separated by 18 nucleotides Psyr_4596 and Psyr_4597 overlap by 4 nucleotides Psyr_4597 and Psyr_4598 are separated by 45 nucleotides Psyr_4598 and Psyr_4599 overlap by 20 nucleotides
Psyr_4595: Psyr_4595 - Bacteriophage Mu tail sheath, at 5,455,327 to 5,456,823
_4595
Psyr_4596: Psyr_4596 - conserved hypothetical protein, at 5,456,842 to 5,457,030
_4596
Psyr_4597: Psyr_4597 - conserved hypothetical protein, at 5,457,027 to 5,457,617
_4597
Psyr_4598: Psyr_4598 - lipoprotein, putative, at 5,457,663 to 5,458,001
_4598
Psyr_4599: Psyr_4599 - conserved hypothetical protein, at 5,457,982 to 5,458,371
_4599
Position (kb) 5456
5457
5458 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5456.048 kb on + strand, within Psyr_4595 at 5456.048 kb on + strand, within Psyr_4595 at 5456.048 kb on + strand, within Psyr_4595 at 5456.048 kb on + strand, within Psyr_4595 at 5456.049 kb on - strand, within Psyr_4595 at 5456.049 kb on - strand, within Psyr_4595 at 5456.222 kb on - strand, within Psyr_4595 at 5456.465 kb on + strand, within Psyr_4595 at 5456.465 kb on + strand, within Psyr_4595 at 5456.465 kb on + strand, within Psyr_4595 at 5456.465 kb on + strand, within Psyr_4595 at 5456.465 kb on + strand, within Psyr_4595 at 5456.466 kb on - strand, within Psyr_4595 at 5456.466 kb on - strand, within Psyr_4595 at 5456.466 kb on - strand, within Psyr_4595 at 5456.466 kb on - strand, within Psyr_4595 at 5456.466 kb on - strand, within Psyr_4595 at 5456.466 kb on - strand, within Psyr_4595 at 5456.509 kb on - strand, within Psyr_4595 at 5456.597 kb on + strand, within Psyr_4595 at 5456.597 kb on + strand, within Psyr_4595 at 5456.597 kb on + strand, within Psyr_4595 at 5456.597 kb on + strand, within Psyr_4595 at 5456.597 kb on + strand, within Psyr_4595 at 5456.597 kb on + strand, within Psyr_4595 at 5456.597 kb on + strand, within Psyr_4595 at 5456.597 kb on + strand, within Psyr_4595 at 5456.597 kb on + strand, within Psyr_4595 at 5456.597 kb on + strand, within Psyr_4595 at 5456.598 kb on - strand, within Psyr_4595 at 5456.598 kb on - strand, within Psyr_4595 at 5456.598 kb on - strand, within Psyr_4595 at 5456.598 kb on - strand, within Psyr_4595 at 5456.598 kb on - strand, within Psyr_4595 at 5456.598 kb on - strand, within Psyr_4595 at 5456.598 kb on - strand, within Psyr_4595 at 5456.598 kb on - strand, within Psyr_4595 at 5456.598 kb on - strand, within Psyr_4595 at 5456.844 kb on - strand at 5456.886 kb on + strand, within Psyr_4596 at 5456.887 kb on - strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.011 kb on - strand, within Psyr_4596 at 5457.160 kb on + strand, within Psyr_4597 at 5457.160 kb on + strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.238 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.493 kb on + strand, within Psyr_4597 at 5457.672 kb on + strand at 5457.833 kb on - strand, within Psyr_4598 at 5457.833 kb on - strand, within Psyr_4598 at 5457.863 kb on + strand, within Psyr_4598 at 5457.863 kb on + strand, within Psyr_4598 at 5457.863 kb on + strand, within Psyr_4598 at 5457.864 kb on - strand, within Psyr_4598 at 5457.864 kb on - strand, within Psyr_4598
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 5,456,048 + Psyr_4595 0.48 -1.1 5,456,048 + Psyr_4595 0.48 +1.2 5,456,048 + Psyr_4595 0.48 -0.8 5,456,048 + Psyr_4595 0.48 +0.6 5,456,049 - Psyr_4595 0.48 +0.6 5,456,049 - Psyr_4595 0.48 +1.4 5,456,222 - Psyr_4595 0.60 +0.3 5,456,465 + Psyr_4595 0.76 -0.5 5,456,465 + Psyr_4595 0.76 +0.6 5,456,465 + Psyr_4595 0.76 -0.5 5,456,465 + Psyr_4595 0.76 -0.6 5,456,465 + Psyr_4595 0.76 -1.6 5,456,466 - Psyr_4595 0.76 -0.1 5,456,466 - Psyr_4595 0.76 -0.8 5,456,466 - Psyr_4595 0.76 +0.3 5,456,466 - Psyr_4595 0.76 +1.1 5,456,466 - Psyr_4595 0.76 -0.8 5,456,466 - Psyr_4595 0.76 -0.5 5,456,509 - Psyr_4595 0.79 -0.2 5,456,597 + Psyr_4595 0.85 +1.1 5,456,597 + Psyr_4595 0.85 -1.1 5,456,597 + Psyr_4595 0.85 +1.5 5,456,597 + Psyr_4595 0.85 +0.8 5,456,597 + Psyr_4595 0.85 -0.6 5,456,597 + Psyr_4595 0.85 +0.4 5,456,597 + Psyr_4595 0.85 +1.1 5,456,597 + Psyr_4595 0.85 -1.1 5,456,597 + Psyr_4595 0.85 +0.4 5,456,597 + Psyr_4595 0.85 -0.5 5,456,598 - Psyr_4595 0.85 +1.2 5,456,598 - Psyr_4595 0.85 +0.7 5,456,598 - Psyr_4595 0.85 +0.6 5,456,598 - Psyr_4595 0.85 -1.9 5,456,598 - Psyr_4595 0.85 +0.5 5,456,598 - Psyr_4595 0.85 +0.9 5,456,598 - Psyr_4595 0.85 -0.6 5,456,598 - Psyr_4595 0.85 -0.4 5,456,598 - Psyr_4595 0.85 -0.1 5,456,844 - -1.1 5,456,886 + Psyr_4596 0.23 +0.2 5,456,887 - Psyr_4596 0.24 +0.5 5,457,010 + Psyr_4596 0.89 -0.9 5,457,010 + Psyr_4596 0.89 +0.6 5,457,010 + Psyr_4596 0.89 +0.1 5,457,010 + Psyr_4596 0.89 -1.6 5,457,011 - Psyr_4596 0.89 -1.4 5,457,160 + Psyr_4597 0.23 -0.6 5,457,160 + Psyr_4597 0.23 -0.3 5,457,161 - Psyr_4597 0.23 +1.5 5,457,161 - Psyr_4597 0.23 +0.9 5,457,161 - Psyr_4597 0.23 -1.0 5,457,161 - Psyr_4597 0.23 +1.2 5,457,161 - Psyr_4597 0.23 -1.2 5,457,238 + Psyr_4597 0.36 -0.5 5,457,283 + Psyr_4597 0.43 +1.3 5,457,283 + Psyr_4597 0.43 +2.5 5,457,283 + Psyr_4597 0.43 -0.4 5,457,283 + Psyr_4597 0.43 +0.6 5,457,493 + Psyr_4597 0.79 -0.5 5,457,672 + +0.1 5,457,833 - Psyr_4598 0.50 -0.7 5,457,833 - Psyr_4598 0.50 +1.0 5,457,863 + Psyr_4598 0.59 +0.7 5,457,863 + Psyr_4598 0.59 -1.6 5,457,863 + Psyr_4598 0.59 -1.0 5,457,864 - Psyr_4598 0.59 +0.0 5,457,864 - Psyr_4598 0.59 -0.5
Or see this region's nucleotide sequence