Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4479 and Psyr_4480 are separated by 318 nucleotides Psyr_4480 and Psyr_4481 are separated by 10 nucleotides Psyr_4481 and Psyr_4482 are separated by 1 nucleotides
Psyr_4479: Psyr_4479 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 5,340,942 to 5,341,790
_4479
Psyr_4480: Psyr_4480 - outer membrane transport energization protein TonB, at 5,342,109 to 5,342,918
_4480
Psyr_4481: Psyr_4481 - outer membrane transport energization protein ExbB, at 5,342,929 to 5,343,621
_4481
Psyr_4482: Psyr_4482 - outer membrane transport energization protein ExbD, at 5,343,623 to 5,344,027
_4482
Position (kb) 5342
5343 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5341.155 kb on - strand, within Psyr_4479 at 5341.155 kb on - strand, within Psyr_4479 at 5341.263 kb on - strand, within Psyr_4479 at 5341.382 kb on - strand, within Psyr_4479 at 5341.552 kb on + strand, within Psyr_4479 at 5341.552 kb on + strand, within Psyr_4479 at 5341.553 kb on - strand, within Psyr_4479 at 5341.553 kb on - strand, within Psyr_4479 at 5341.563 kb on + strand, within Psyr_4479 at 5341.563 kb on + strand, within Psyr_4479 at 5341.564 kb on - strand, within Psyr_4479 at 5341.564 kb on - strand, within Psyr_4479 at 5341.779 kb on + strand at 5341.780 kb on - strand at 5341.878 kb on + strand at 5341.878 kb on + strand at 5341.879 kb on - strand at 5341.879 kb on - strand at 5341.879 kb on - strand at 5341.880 kb on + strand at 5341.880 kb on + strand at 5341.880 kb on + strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.909 kb on + strand at 5341.909 kb on + strand at 5341.909 kb on + strand at 5341.909 kb on + strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.933 kb on + strand at 5341.977 kb on - strand at 5342.032 kb on - strand at 5342.034 kb on + strand at 5342.122 kb on + strand at 5342.122 kb on + strand at 5342.123 kb on - strand at 5342.152 kb on + strand at 5342.181 kb on - strand at 5342.685 kb on + strand, within Psyr_4480 at 5342.760 kb on - strand, within Psyr_4480 at 5342.843 kb on + strand at 5342.843 kb on + strand at 5342.843 kb on + strand at 5342.843 kb on + strand at 5342.844 kb on - strand at 5342.844 kb on - strand at 5342.941 kb on + strand at 5342.942 kb on - strand at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.062 kb on - strand, within Psyr_4481 at 5343.472 kb on + strand, within Psyr_4481 at 5343.472 kb on + strand, within Psyr_4481 at 5343.473 kb on - strand, within Psyr_4481 at 5343.473 kb on - strand, within Psyr_4481
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 5,341,155 - Psyr_4479 0.25 -0.5 5,341,155 - Psyr_4479 0.25 -0.5 5,341,263 - Psyr_4479 0.38 +0.0 5,341,382 - Psyr_4479 0.52 +1.9 5,341,552 + Psyr_4479 0.72 +0.3 5,341,552 + Psyr_4479 0.72 -1.1 5,341,553 - Psyr_4479 0.72 -0.4 5,341,553 - Psyr_4479 0.72 -1.4 5,341,563 + Psyr_4479 0.73 +0.9 5,341,563 + Psyr_4479 0.73 -0.5 5,341,564 - Psyr_4479 0.73 -0.9 5,341,564 - Psyr_4479 0.73 -2.5 5,341,779 + -0.5 5,341,780 - +0.3 5,341,878 + -0.9 5,341,878 + -0.7 5,341,879 - -1.1 5,341,879 - -0.4 5,341,879 - -0.9 5,341,880 + +0.2 5,341,880 + -0.4 5,341,880 + +0.1 5,341,881 - +0.5 5,341,881 - -0.8 5,341,881 - -1.7 5,341,881 - +0.4 5,341,909 + +0.0 5,341,909 + +1.2 5,341,909 + -0.4 5,341,909 + +0.2 5,341,910 - -0.7 5,341,910 - +0.0 5,341,910 - +0.1 5,341,910 - +1.7 5,341,910 - +0.5 5,341,933 + +1.3 5,341,977 - -0.5 5,342,032 - +0.1 5,342,034 + +1.7 5,342,122 + +1.5 5,342,122 + +0.9 5,342,123 - -0.2 5,342,152 + +1.6 5,342,181 - -0.1 5,342,685 + Psyr_4480 0.71 -1.5 5,342,760 - Psyr_4480 0.80 -0.3 5,342,843 + -0.9 5,342,843 + -0.1 5,342,843 + +0.1 5,342,843 + -0.4 5,342,844 - +0.6 5,342,844 - +1.1 5,342,941 + +0.7 5,342,942 - +0.3 5,343,009 - Psyr_4481 0.12 -1.1 5,343,009 - Psyr_4481 0.12 +2.3 5,343,009 - Psyr_4481 0.12 -0.4 5,343,009 - Psyr_4481 0.12 +0.3 5,343,009 - Psyr_4481 0.12 -0.4 5,343,062 - Psyr_4481 0.19 +0.3 5,343,472 + Psyr_4481 0.78 +1.3 5,343,472 + Psyr_4481 0.78 -0.4 5,343,473 - Psyr_4481 0.78 -0.7 5,343,473 - Psyr_4481 0.78 +0.2
Or see this region's nucleotide sequence