Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4296 and Psyr_4297 are separated by 248 nucleotides Psyr_4297 and Psyr_4298 are separated by 62 nucleotides
Psyr_4296: Psyr_4296 - HI0933-like protein, at 5,122,313 to 5,123,587
_4296
Psyr_4297: Psyr_4297 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 5,123,836 to 5,125,164
_4297
Psyr_4298: Psyr_4298 - Protein of unknown function DUF6, at 5,125,227 to 5,126,141
_4298
Position (kb) 5123
5124
5125
5126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5123.102 kb on + strand, within Psyr_4296 at 5123.102 kb on + strand, within Psyr_4296 at 5123.102 kb on + strand, within Psyr_4296 at 5123.102 kb on + strand, within Psyr_4296 at 5123.102 kb on + strand, within Psyr_4296 at 5123.102 kb on + strand, within Psyr_4296 at 5123.102 kb on + strand, within Psyr_4296 at 5123.102 kb on + strand, within Psyr_4296 at 5123.102 kb on + strand, within Psyr_4296 at 5123.102 kb on + strand, within Psyr_4296 at 5123.103 kb on - strand, within Psyr_4296 at 5123.103 kb on - strand, within Psyr_4296 at 5123.103 kb on - strand, within Psyr_4296 at 5123.103 kb on - strand, within Psyr_4296 at 5123.252 kb on - strand, within Psyr_4296 at 5123.370 kb on + strand, within Psyr_4296 at 5123.371 kb on - strand, within Psyr_4296 at 5123.371 kb on - strand, within Psyr_4296 at 5123.466 kb on + strand at 5123.513 kb on + strand at 5123.620 kb on + strand at 5123.621 kb on - strand at 5123.621 kb on - strand at 5123.622 kb on + strand at 5123.622 kb on + strand at 5123.623 kb on - strand at 5123.623 kb on - strand at 5123.624 kb on + strand at 5123.624 kb on + strand at 5123.624 kb on + strand at 5123.624 kb on + strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.625 kb on - strand at 5123.657 kb on + strand at 5123.658 kb on - strand at 5123.793 kb on + strand at 5123.793 kb on + strand at 5123.793 kb on + strand at 5123.794 kb on - strand at 5123.794 kb on - strand at 5123.794 kb on - strand at 5123.794 kb on - strand at 5123.794 kb on - strand at 5123.795 kb on + strand at 5123.795 kb on + strand at 5123.876 kb on - strand at 5123.876 kb on - strand at 5123.880 kb on + strand at 5123.881 kb on - strand at 5123.881 kb on - strand at 5123.881 kb on - strand at 5124.182 kb on + strand, within Psyr_4297 at 5124.182 kb on + strand, within Psyr_4297 at 5124.182 kb on + strand, within Psyr_4297 at 5124.182 kb on + strand, within Psyr_4297 at 5124.182 kb on + strand, within Psyr_4297 at 5124.182 kb on + strand, within Psyr_4297 at 5124.183 kb on - strand, within Psyr_4297 at 5124.183 kb on - strand, within Psyr_4297 at 5124.183 kb on - strand, within Psyr_4297 at 5124.183 kb on - strand, within Psyr_4297 at 5124.183 kb on - strand, within Psyr_4297 at 5124.183 kb on - strand, within Psyr_4297 at 5124.183 kb on - strand, within Psyr_4297 at 5124.183 kb on - strand, within Psyr_4297 at 5124.183 kb on - strand, within Psyr_4297 at 5124.647 kb on + strand, within Psyr_4297 at 5124.647 kb on + strand, within Psyr_4297 at 5124.647 kb on + strand, within Psyr_4297 at 5124.647 kb on + strand, within Psyr_4297 at 5124.647 kb on + strand, within Psyr_4297 at 5124.648 kb on - strand, within Psyr_4297 at 5124.648 kb on - strand, within Psyr_4297 at 5124.688 kb on - strand, within Psyr_4297 at 5124.688 kb on - strand, within Psyr_4297 at 5124.688 kb on - strand, within Psyr_4297 at 5124.848 kb on + strand, within Psyr_4297 at 5124.848 kb on + strand, within Psyr_4297 at 5124.849 kb on - strand, within Psyr_4297 at 5124.876 kb on - strand, within Psyr_4297 at 5125.084 kb on + strand at 5125.084 kb on + strand at 5125.170 kb on + strand at 5125.170 kb on + strand at 5125.205 kb on + strand at 5125.396 kb on + strand, within Psyr_4298 at 5125.396 kb on + strand, within Psyr_4298 at 5125.397 kb on - strand, within Psyr_4298 at 5125.402 kb on + strand, within Psyr_4298 at 5125.403 kb on - strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.467 kb on - strand, within Psyr_4298 at 5125.486 kb on + strand, within Psyr_4298 at 5125.486 kb on + strand, within Psyr_4298 at 5125.486 kb on + strand, within Psyr_4298 at 5125.487 kb on - strand, within Psyr_4298 at 5125.487 kb on - strand, within Psyr_4298 at 5125.520 kb on + strand, within Psyr_4298 at 5125.687 kb on + strand, within Psyr_4298 at 5125.687 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.982 kb on - strand, within Psyr_4298 at 5125.982 kb on - strand, within Psyr_4298 at 5125.982 kb on - strand, within Psyr_4298 at 5125.982 kb on - strand, within Psyr_4298 at 5125.982 kb on - strand, within Psyr_4298 at 5126.065 kb on + strand at 5126.065 kb on + strand at 5126.065 kb on + strand at 5126.065 kb on + strand at 5126.065 kb on + strand at 5126.066 kb on - strand at 5126.066 kb on - strand at 5126.066 kb on - strand at 5126.069 kb on + strand at 5126.070 kb on - strand at 5126.087 kb on - strand at 5126.087 kb on - strand at 5126.146 kb on - strand at 5126.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 5,123,102 + Psyr_4296 0.62 +0.3 5,123,102 + Psyr_4296 0.62 -0.7 5,123,102 + Psyr_4296 0.62 -2.7 5,123,102 + Psyr_4296 0.62 -0.4 5,123,102 + Psyr_4296 0.62 -1.4 5,123,102 + Psyr_4296 0.62 +0.3 5,123,102 + Psyr_4296 0.62 -0.6 5,123,102 + Psyr_4296 0.62 +0.7 5,123,102 + Psyr_4296 0.62 -0.0 5,123,102 + Psyr_4296 0.62 -0.9 5,123,103 - Psyr_4296 0.62 -0.4 5,123,103 - Psyr_4296 0.62 +0.5 5,123,103 - Psyr_4296 0.62 -0.0 5,123,103 - Psyr_4296 0.62 -1.0 5,123,252 - Psyr_4296 0.74 -1.6 5,123,370 + Psyr_4296 0.83 -0.1 5,123,371 - Psyr_4296 0.83 -0.0 5,123,371 - Psyr_4296 0.83 +0.2 5,123,466 + -0.7 5,123,513 + +1.2 5,123,620 + +0.1 5,123,621 - +1.6 5,123,621 - +0.2 5,123,622 + -0.4 5,123,622 + -0.4 5,123,623 - -3.1 5,123,623 - +0.0 5,123,624 + -1.2 5,123,624 + +0.8 5,123,624 + +1.4 5,123,624 + +0.6 5,123,625 - -0.0 5,123,625 - +0.6 5,123,625 - -0.6 5,123,625 - -0.0 5,123,625 - +0.2 5,123,625 - +0.4 5,123,625 - +2.0 5,123,625 - -0.0 5,123,625 - +1.6 5,123,625 - -0.3 5,123,625 - -0.2 5,123,625 - +0.4 5,123,657 + -0.2 5,123,658 - +0.6 5,123,793 + -0.3 5,123,793 + +0.9 5,123,793 + -0.2 5,123,794 - -0.2 5,123,794 - +2.0 5,123,794 - +0.6 5,123,794 - +1.0 5,123,794 - -1.4 5,123,795 + +1.1 5,123,795 + +0.6 5,123,876 - -2.1 5,123,876 - +0.3 5,123,880 + -1.5 5,123,881 - +0.3 5,123,881 - -2.4 5,123,881 - +1.2 5,124,182 + Psyr_4297 0.26 -1.3 5,124,182 + Psyr_4297 0.26 +0.2 5,124,182 + Psyr_4297 0.26 -0.4 5,124,182 + Psyr_4297 0.26 -0.6 5,124,182 + Psyr_4297 0.26 +0.7 5,124,182 + Psyr_4297 0.26 +1.4 5,124,183 - Psyr_4297 0.26 -0.6 5,124,183 - Psyr_4297 0.26 +0.6 5,124,183 - Psyr_4297 0.26 +0.1 5,124,183 - Psyr_4297 0.26 -0.3 5,124,183 - Psyr_4297 0.26 -1.6 5,124,183 - Psyr_4297 0.26 -0.4 5,124,183 - Psyr_4297 0.26 -1.8 5,124,183 - Psyr_4297 0.26 -1.4 5,124,183 - Psyr_4297 0.26 -0.0 5,124,647 + Psyr_4297 0.61 -1.0 5,124,647 + Psyr_4297 0.61 -0.6 5,124,647 + Psyr_4297 0.61 +0.6 5,124,647 + Psyr_4297 0.61 -1.1 5,124,647 + Psyr_4297 0.61 -1.5 5,124,648 - Psyr_4297 0.61 -0.7 5,124,648 - Psyr_4297 0.61 -1.6 5,124,688 - Psyr_4297 0.64 -0.6 5,124,688 - Psyr_4297 0.64 -1.4 5,124,688 - Psyr_4297 0.64 +0.5 5,124,848 + Psyr_4297 0.76 -0.2 5,124,848 + Psyr_4297 0.76 +2.0 5,124,849 - Psyr_4297 0.76 -1.0 5,124,876 - Psyr_4297 0.78 -0.3 5,125,084 + -0.2 5,125,084 + -0.0 5,125,170 + -2.0 5,125,170 + -0.7 5,125,205 + +0.1 5,125,396 + Psyr_4298 0.18 +1.6 5,125,396 + Psyr_4298 0.18 -1.4 5,125,397 - Psyr_4298 0.19 -1.3 5,125,402 + Psyr_4298 0.19 +1.3 5,125,403 - Psyr_4298 0.19 +1.0 5,125,441 + Psyr_4298 0.23 +0.3 5,125,441 + Psyr_4298 0.23 +2.0 5,125,441 + Psyr_4298 0.23 +0.3 5,125,441 + Psyr_4298 0.23 +0.6 5,125,441 + Psyr_4298 0.23 +1.3 5,125,441 + Psyr_4298 0.23 -1.0 5,125,441 + Psyr_4298 0.23 -0.7 5,125,441 + Psyr_4298 0.23 +0.6 5,125,441 + Psyr_4298 0.23 +1.7 5,125,441 + Psyr_4298 0.23 -0.3 5,125,441 + Psyr_4298 0.23 -0.3 5,125,442 - Psyr_4298 0.23 +0.3 5,125,442 - Psyr_4298 0.23 +1.0 5,125,442 - Psyr_4298 0.23 +0.5 5,125,442 - Psyr_4298 0.23 -0.4 5,125,442 - Psyr_4298 0.23 -0.8 5,125,442 - Psyr_4298 0.23 +0.2 5,125,445 + Psyr_4298 0.24 -0.3 5,125,445 + Psyr_4298 0.24 -0.5 5,125,445 + Psyr_4298 0.24 -0.7 5,125,445 + Psyr_4298 0.24 -0.0 5,125,445 + Psyr_4298 0.24 +0.6 5,125,445 + Psyr_4298 0.24 -0.0 5,125,445 + Psyr_4298 0.24 +0.1 5,125,445 + Psyr_4298 0.24 +1.2 5,125,445 + Psyr_4298 0.24 -0.0 5,125,445 + Psyr_4298 0.24 -0.8 5,125,445 + Psyr_4298 0.24 +0.7 5,125,445 + Psyr_4298 0.24 +1.0 5,125,445 + Psyr_4298 0.24 -0.6 5,125,445 + Psyr_4298 0.24 +1.0 5,125,445 + Psyr_4298 0.24 -0.6 5,125,445 + Psyr_4298 0.24 +0.1 5,125,445 + Psyr_4298 0.24 +0.2 5,125,445 + Psyr_4298 0.24 -0.3 5,125,445 + Psyr_4298 0.24 +0.6 5,125,445 + Psyr_4298 0.24 -0.3 5,125,445 + Psyr_4298 0.24 +0.6 5,125,445 + Psyr_4298 0.24 -0.3 5,125,445 + Psyr_4298 0.24 +0.4 5,125,446 - Psyr_4298 0.24 +0.4 5,125,446 - Psyr_4298 0.24 -0.4 5,125,446 - Psyr_4298 0.24 -2.0 5,125,446 - Psyr_4298 0.24 +1.0 5,125,446 - Psyr_4298 0.24 -0.5 5,125,446 - Psyr_4298 0.24 +0.6 5,125,446 - Psyr_4298 0.24 -0.0 5,125,446 - Psyr_4298 0.24 -0.4 5,125,446 - Psyr_4298 0.24 +0.6 5,125,446 - Psyr_4298 0.24 -0.7 5,125,446 - Psyr_4298 0.24 +0.5 5,125,446 - Psyr_4298 0.24 -0.4 5,125,446 - Psyr_4298 0.24 -0.1 5,125,446 - Psyr_4298 0.24 +1.0 5,125,446 - Psyr_4298 0.24 -0.0 5,125,446 - Psyr_4298 0.24 -0.2 5,125,446 - Psyr_4298 0.24 -2.1 5,125,446 - Psyr_4298 0.24 +0.7 5,125,446 - Psyr_4298 0.24 +1.7 5,125,446 - Psyr_4298 0.24 +1.5 5,125,446 - Psyr_4298 0.24 +1.3 5,125,446 - Psyr_4298 0.24 +0.3 5,125,446 - Psyr_4298 0.24 +0.4 5,125,446 - Psyr_4298 0.24 +0.6 5,125,446 - Psyr_4298 0.24 +1.4 5,125,446 - Psyr_4298 0.24 -0.7 5,125,447 + Psyr_4298 0.24 +2.8 5,125,447 + Psyr_4298 0.24 +2.0 5,125,447 + Psyr_4298 0.24 +0.7 5,125,447 + Psyr_4298 0.24 +0.0 5,125,447 + Psyr_4298 0.24 +0.7 5,125,447 + Psyr_4298 0.24 +0.6 5,125,448 - Psyr_4298 0.24 -0.3 5,125,448 - Psyr_4298 0.24 -2.0 5,125,448 - Psyr_4298 0.24 -1.0 5,125,448 - Psyr_4298 0.24 +2.0 5,125,448 - Psyr_4298 0.24 -0.4 5,125,448 - Psyr_4298 0.24 +0.4 5,125,467 - Psyr_4298 0.26 +0.3 5,125,486 + Psyr_4298 0.28 -0.2 5,125,486 + Psyr_4298 0.28 +0.2 5,125,486 + Psyr_4298 0.28 +0.4 5,125,487 - Psyr_4298 0.28 +0.9 5,125,487 - Psyr_4298 0.28 -1.0 5,125,520 + Psyr_4298 0.32 +0.8 5,125,687 + Psyr_4298 0.50 -0.1 5,125,687 + Psyr_4298 0.50 -1.6 5,125,981 + Psyr_4298 0.82 +0.4 5,125,981 + Psyr_4298 0.82 +0.4 5,125,981 + Psyr_4298 0.82 -1.2 5,125,981 + Psyr_4298 0.82 +0.8 5,125,981 + Psyr_4298 0.82 -0.3 5,125,981 + Psyr_4298 0.82 +0.4 5,125,981 + Psyr_4298 0.82 -1.0 5,125,982 - Psyr_4298 0.83 -0.2 5,125,982 - Psyr_4298 0.83 +1.7 5,125,982 - Psyr_4298 0.83 -0.8 5,125,982 - Psyr_4298 0.83 -0.1 5,125,982 - Psyr_4298 0.83 -0.3 5,126,065 + -0.5 5,126,065 + +0.8 5,126,065 + +1.3 5,126,065 + -0.2 5,126,065 + +1.6 5,126,066 - +0.3 5,126,066 - -0.2 5,126,066 - +1.0 5,126,069 + -0.6 5,126,070 - -0.3 5,126,087 - +0.7 5,126,087 - -0.6 5,126,146 - +0.2 5,126,164 + +0.2
Or see this region's nucleotide sequence