Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4065 and Psyr_4066 are separated by 20 nucleotides Psyr_4066 and Psyr_4067 overlap by 4 nucleotides Psyr_4067 and Psyr_4068 are separated by 4 nucleotides Psyr_4068 and Psyr_4069 are separated by 200 nucleotides
Psyr_4065: Psyr_4065 - Protein of unknown function DUF1513, at 4,849,605 to 4,850,711
_4065
Psyr_4066: Psyr_4066 - conserved hypothetical protein, at 4,850,732 to 4,850,959
_4066
Psyr_4067: Psyr_4067 - Lipopolysaccharide kinase, at 4,850,956 to 4,851,678
_4067
Psyr_4068: Psyr_4068 - conserved hypothetical protein, at 4,851,683 to 4,852,363
_4068
Psyr_4069: Psyr_4069 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,852,564 to 4,853,853
_4069
Position (kb) 4851
4852
4853 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4850.709 kb on + strand at 4850.713 kb on + strand at 4850.713 kb on + strand at 4850.713 kb on + strand at 4850.714 kb on - strand at 4850.714 kb on - strand at 4850.714 kb on - strand at 4850.714 kb on - strand at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.767 kb on - strand, within Psyr_4066 at 4850.767 kb on - strand, within Psyr_4066 at 4850.767 kb on - strand, within Psyr_4066 at 4850.929 kb on + strand, within Psyr_4066 at 4850.952 kb on - strand at 4850.977 kb on - strand at 4850.977 kb on - strand at 4851.005 kb on + strand at 4851.005 kb on + strand at 4851.063 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.260 kb on + strand, within Psyr_4067 at 4851.260 kb on + strand, within Psyr_4067 at 4851.260 kb on + strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.454 kb on + strand, within Psyr_4067 at 4851.455 kb on - strand, within Psyr_4067 at 4851.455 kb on - strand, within Psyr_4067 at 4851.492 kb on - strand, within Psyr_4067 at 4851.492 kb on - strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.518 kb on + strand, within Psyr_4067 at 4851.518 kb on + strand, within Psyr_4067 at 4851.684 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.696 kb on - strand at 4851.696 kb on - strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.720 kb on + strand at 4851.720 kb on + strand at 4851.720 kb on + strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.816 kb on + strand, within Psyr_4068 at 4851.944 kb on + strand, within Psyr_4068 at 4851.945 kb on - strand, within Psyr_4068 at 4852.008 kb on - strand, within Psyr_4068 at 4852.058 kb on + strand, within Psyr_4068 at 4852.068 kb on - strand, within Psyr_4068 at 4852.121 kb on - strand, within Psyr_4068 at 4852.279 kb on + strand, within Psyr_4068 at 4852.302 kb on + strand at 4852.303 kb on - strand at 4852.326 kb on + strand at 4852.327 kb on - strand at 4852.397 kb on + strand at 4852.397 kb on + strand at 4852.397 kb on + strand at 4852.398 kb on - strand at 4852.398 kb on - strand at 4852.453 kb on - strand at 4852.549 kb on + strand at 4852.550 kb on - strand at 4852.650 kb on + strand at 4852.650 kb on + strand at 4852.650 kb on + strand at 4852.651 kb on - strand at 4852.651 kb on - strand at 4852.651 kb on - strand at 4852.651 kb on - strand at 4852.807 kb on + strand, within Psyr_4069 at 4852.922 kb on + strand, within Psyr_4069 at 4852.922 kb on + strand, within Psyr_4069 at 4852.922 kb on + strand, within Psyr_4069 at 4852.923 kb on - strand, within Psyr_4069 at 4852.923 kb on - strand, within Psyr_4069 at 4853.182 kb on - strand, within Psyr_4069 at 4853.208 kb on + strand, within Psyr_4069 at 4853.208 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 4,850,709 + +0.8 4,850,713 + -0.9 4,850,713 + +0.4 4,850,713 + -1.1 4,850,714 - +0.2 4,850,714 - +0.9 4,850,714 - -0.8 4,850,714 - +1.2 4,850,766 + Psyr_4066 0.15 +0.8 4,850,766 + Psyr_4066 0.15 -0.9 4,850,766 + Psyr_4066 0.15 +0.6 4,850,766 + Psyr_4066 0.15 -0.2 4,850,766 + +1.6 4,850,766 + Psyr_4066 0.15 +0.9 4,850,766 + Psyr_4066 0.15 -0.0 4,850,766 + Psyr_4066 0.15 +0.1 4,850,767 - Psyr_4066 0.15 +1.2 4,850,767 - Psyr_4066 0.15 +0.3 4,850,767 - Psyr_4066 0.15 -0.2 4,850,929 + Psyr_4066 0.86 +1.3 4,850,952 - -0.1 4,850,977 - -0.5 4,850,977 - +1.6 4,851,005 + -0.0 4,851,005 + +0.3 4,851,063 + Psyr_4067 0.15 -0.9 4,851,185 + Psyr_4067 0.32 +1.2 4,851,185 + Psyr_4067 0.32 -0.2 4,851,185 + Psyr_4067 0.32 +1.2 4,851,185 + Psyr_4067 0.32 -1.1 4,851,185 + Psyr_4067 0.32 +0.9 4,851,185 + Psyr_4067 0.32 +1.5 4,851,185 + Psyr_4067 0.32 +0.4 4,851,185 + Psyr_4067 0.32 +1.1 4,851,185 + Psyr_4067 0.32 -0.1 4,851,185 + Psyr_4067 0.32 +1.2 4,851,185 + Psyr_4067 0.32 +1.2 4,851,186 - Psyr_4067 0.32 -0.4 4,851,186 - Psyr_4067 0.32 -1.4 4,851,186 - Psyr_4067 0.32 -1.1 4,851,186 - Psyr_4067 0.32 +1.1 4,851,260 + Psyr_4067 0.42 -0.3 4,851,260 + Psyr_4067 0.42 -0.2 4,851,260 + Psyr_4067 0.42 +1.2 4,851,261 - Psyr_4067 0.42 +0.5 4,851,261 - Psyr_4067 0.42 +1.0 4,851,261 - Psyr_4067 0.42 -1.0 4,851,261 - Psyr_4067 0.42 +1.1 4,851,454 + Psyr_4067 0.69 +1.0 4,851,455 - Psyr_4067 0.69 -0.4 4,851,455 - Psyr_4067 0.69 +0.5 4,851,492 - Psyr_4067 0.74 -0.4 4,851,492 - Psyr_4067 0.74 -0.1 4,851,495 + Psyr_4067 0.75 +0.5 4,851,495 + Psyr_4067 0.75 -1.1 4,851,495 + Psyr_4067 0.75 -1.1 4,851,495 + Psyr_4067 0.75 +1.9 4,851,496 - Psyr_4067 0.75 -0.2 4,851,496 - Psyr_4067 0.75 -0.1 4,851,496 - Psyr_4067 0.75 +0.0 4,851,496 - Psyr_4067 0.75 -1.8 4,851,496 - Psyr_4067 0.75 +0.6 4,851,496 - Psyr_4067 0.75 -0.2 4,851,518 + Psyr_4067 0.78 +0.9 4,851,518 + Psyr_4067 0.78 +0.0 4,851,684 + +1.4 4,851,691 + -0.5 4,851,691 + +1.0 4,851,691 + +0.3 4,851,691 + +0.7 4,851,691 + +0.5 4,851,691 + +1.5 4,851,692 - -0.7 4,851,692 - -1.7 4,851,692 - +0.2 4,851,692 - +0.1 4,851,696 - +0.3 4,851,696 - +0.1 4,851,702 + -0.1 4,851,702 + +0.3 4,851,702 + +0.3 4,851,702 + +0.7 4,851,702 + +0.9 4,851,702 + -2.1 4,851,702 + +0.2 4,851,702 + +0.5 4,851,702 + -0.1 4,851,702 + -0.8 4,851,702 + -0.1 4,851,702 + -0.1 4,851,702 + +1.2 4,851,703 - +1.2 4,851,703 - -0.4 4,851,703 - +0.4 4,851,703 - -1.8 4,851,703 - +1.3 4,851,703 - +1.9 4,851,703 - +0.2 4,851,703 - -0.2 4,851,703 - -1.1 4,851,703 - -0.1 4,851,703 - -0.8 4,851,703 - +0.7 4,851,703 - +0.1 4,851,720 + -0.1 4,851,720 + +1.5 4,851,720 + +1.5 4,851,721 - +1.2 4,851,721 - +0.6 4,851,721 - -0.3 4,851,721 - +0.6 4,851,721 - -1.8 4,851,816 + Psyr_4068 0.20 +0.1 4,851,944 + Psyr_4068 0.38 -1.1 4,851,945 - Psyr_4068 0.38 -0.2 4,852,008 - Psyr_4068 0.48 -0.2 4,852,058 + Psyr_4068 0.55 -1.4 4,852,068 - Psyr_4068 0.57 +1.2 4,852,121 - Psyr_4068 0.64 -2.3 4,852,279 + Psyr_4068 0.88 -0.9 4,852,302 + +3.2 4,852,303 - -0.2 4,852,326 + -0.3 4,852,327 - +0.0 4,852,397 + -1.4 4,852,397 + +1.5 4,852,397 + -0.9 4,852,398 - -0.9 4,852,398 - -0.5 4,852,453 - -0.4 4,852,549 + -0.1 4,852,550 - +0.4 4,852,650 + -0.4 4,852,650 + +0.1 4,852,650 + +1.2 4,852,651 - -0.3 4,852,651 - +1.4 4,852,651 - -1.0 4,852,651 - +0.1 4,852,807 + Psyr_4069 0.19 +0.2 4,852,922 + Psyr_4069 0.28 -0.1 4,852,922 + Psyr_4069 0.28 +0.4 4,852,922 + Psyr_4069 0.28 +0.1 4,852,923 - Psyr_4069 0.28 +1.1 4,852,923 - Psyr_4069 0.28 -0.5 4,853,182 - Psyr_4069 0.48 -0.4 4,853,208 + Psyr_4069 0.50 -0.5 4,853,208 + Psyr_4069 0.50 -1.9 4,853,214 + Psyr_4069 0.50 -0.8 4,853,214 + Psyr_4069 0.50 +0.6 4,853,214 + Psyr_4069 0.50 +0.5 4,853,214 + Psyr_4069 0.50 -0.1 4,853,214 + Psyr_4069 0.50 -0.1 4,853,214 + Psyr_4069 0.50 +0.1 4,853,214 + Psyr_4069 0.50 -0.9 4,853,214 + Psyr_4069 0.50 +0.9 4,853,214 + Psyr_4069 0.50 +0.1 4,853,214 + Psyr_4069 0.50 -0.2 4,853,215 - Psyr_4069 0.50 -1.6 4,853,215 - Psyr_4069 0.50 +0.1 4,853,215 - Psyr_4069 0.50 +1.1 4,853,215 - Psyr_4069 0.50 -0.8 4,853,215 - Psyr_4069 0.50 -0.1 4,853,215 - Psyr_4069 0.50 -1.3 4,853,215 - Psyr_4069 0.50 +0.0 4,853,215 - Psyr_4069 0.50 -0.4 4,853,215 - Psyr_4069 0.50 -1.1 4,853,215 - Psyr_4069 0.50 -0.1 4,853,215 - Psyr_4069 0.50 +1.2 4,853,215 - Psyr_4069 0.50 -1.1
Or see this region's nucleotide sequence