Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3985 and Psyr_3986 are separated by 118 nucleotides Psyr_3986 and Psyr_3987 are separated by 24 nucleotides
Psyr_3985: Psyr_3985 - Pectate lyase/Amb allergen, at 4,743,013 to 4,744,278
_3985
Psyr_3986: Psyr_3986 - GCN5-related N-acetyltransferase, at 4,744,397 to 4,744,843
_3986
Psyr_3987: Psyr_3987 - Iron-containing alcohol dehydrogenase, at 4,744,868 to 4,746,016
_3987
Position (kb) 4744
4745 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.471 kb on - strand, within Psyr_3985 at 4743.471 kb on - strand, within Psyr_3985 at 4743.471 kb on - strand, within Psyr_3985 at 4743.471 kb on - strand, within Psyr_3985 at 4743.552 kb on - strand, within Psyr_3985 at 4743.869 kb on + strand, within Psyr_3985 at 4743.870 kb on - strand, within Psyr_3985 at 4743.870 kb on - strand, within Psyr_3985 at 4743.870 kb on - strand, within Psyr_3985 at 4743.996 kb on + strand, within Psyr_3985 at 4744.378 kb on + strand at 4744.379 kb on - strand at 4744.379 kb on - strand at 4744.453 kb on + strand, within Psyr_3986 at 4744.488 kb on + strand, within Psyr_3986 at 4744.489 kb on - strand, within Psyr_3986 at 4744.489 kb on - strand, within Psyr_3986 at 4744.707 kb on + strand, within Psyr_3986 at 4744.707 kb on + strand, within Psyr_3986 at 4744.707 kb on + strand, within Psyr_3986 at 4744.708 kb on - strand, within Psyr_3986 at 4744.767 kb on + strand, within Psyr_3986 at 4744.792 kb on + strand, within Psyr_3986 at 4744.858 kb on - strand at 4744.858 kb on - strand at 4744.886 kb on + strand at 4744.886 kb on + strand at 4744.886 kb on + strand at 4744.886 kb on + strand at 4744.886 kb on + strand at 4744.886 kb on + strand at 4744.887 kb on - strand at 4744.887 kb on - strand at 4744.887 kb on - strand at 4744.887 kb on - strand at 4744.889 kb on - strand at 4744.889 kb on - strand at 4744.996 kb on + strand, within Psyr_3987 at 4745.203 kb on - strand, within Psyr_3987 at 4745.203 kb on - strand, within Psyr_3987 at 4745.239 kb on - strand, within Psyr_3987 at 4745.369 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.543 kb on + strand, within Psyr_3987 at 4745.543 kb on + strand, within Psyr_3987 at 4745.609 kb on - strand, within Psyr_3987 at 4745.661 kb on + strand, within Psyr_3987 at 4745.661 kb on + strand, within Psyr_3987 at 4745.671 kb on + strand, within Psyr_3987 at 4745.701 kb on + strand, within Psyr_3987 at 4745.826 kb on + strand, within Psyr_3987 at 4745.826 kb on + strand, within Psyr_3987 at 4745.826 kb on + strand, within Psyr_3987 at 4745.826 kb on + strand, within Psyr_3987 at 4745.827 kb on - strand, within Psyr_3987 at 4745.827 kb on - strand, within Psyr_3987 at 4745.827 kb on - strand, within Psyr_3987
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 4,743,466 + Psyr_3985 0.36 +0.3 4,743,466 + Psyr_3985 0.36 +0.5 4,743,466 + Psyr_3985 0.36 +0.6 4,743,466 + Psyr_3985 0.36 -0.7 4,743,466 + Psyr_3985 0.36 +0.9 4,743,467 - Psyr_3985 0.36 -0.2 4,743,467 - Psyr_3985 0.36 -1.2 4,743,467 - Psyr_3985 0.36 +0.3 4,743,467 - Psyr_3985 0.36 +0.6 4,743,467 - Psyr_3985 0.36 -0.4 4,743,467 - Psyr_3985 0.36 +1.6 4,743,467 - Psyr_3985 0.36 -0.1 4,743,467 - Psyr_3985 0.36 -0.4 4,743,467 - Psyr_3985 0.36 -0.3 4,743,467 - Psyr_3985 0.36 +0.2 4,743,467 - Psyr_3985 0.36 -0.4 4,743,470 + Psyr_3985 0.36 +0.8 4,743,470 + Psyr_3985 0.36 -2.2 4,743,470 + Psyr_3985 0.36 +0.9 4,743,470 + Psyr_3985 0.36 +0.5 4,743,470 + Psyr_3985 0.36 +0.4 4,743,470 + Psyr_3985 0.36 -0.1 4,743,470 + Psyr_3985 0.36 +0.2 4,743,471 - Psyr_3985 0.36 -1.1 4,743,471 - Psyr_3985 0.36 -0.1 4,743,471 - Psyr_3985 0.36 -0.9 4,743,471 - Psyr_3985 0.36 -1.4 4,743,552 - Psyr_3985 0.43 +1.5 4,743,869 + Psyr_3985 0.68 -0.8 4,743,870 - Psyr_3985 0.68 -1.2 4,743,870 - Psyr_3985 0.68 +2.2 4,743,870 - Psyr_3985 0.68 -1.6 4,743,996 + Psyr_3985 0.78 +0.3 4,744,378 + -0.2 4,744,379 - +0.0 4,744,379 - -1.1 4,744,453 + Psyr_3986 0.13 -0.4 4,744,488 + Psyr_3986 0.20 +0.4 4,744,489 - Psyr_3986 0.21 +1.0 4,744,489 - Psyr_3986 0.21 +0.2 4,744,707 + Psyr_3986 0.69 -0.6 4,744,707 + Psyr_3986 0.69 -0.9 4,744,707 + Psyr_3986 0.69 -1.3 4,744,708 - Psyr_3986 0.70 +0.9 4,744,767 + Psyr_3986 0.83 +1.0 4,744,792 + Psyr_3986 0.88 +1.5 4,744,858 - -1.2 4,744,858 - -1.1 4,744,886 + -0.3 4,744,886 + +0.5 4,744,886 + +0.2 4,744,886 + -0.9 4,744,886 + +0.6 4,744,886 + -0.1 4,744,887 - +0.2 4,744,887 - +2.2 4,744,887 - -0.5 4,744,887 - -0.2 4,744,889 - +0.1 4,744,889 - -0.7 4,744,996 + Psyr_3987 0.11 +1.7 4,745,203 - Psyr_3987 0.29 +1.4 4,745,203 - Psyr_3987 0.29 -1.2 4,745,239 - Psyr_3987 0.32 +1.0 4,745,369 + Psyr_3987 0.44 +1.9 4,745,412 + Psyr_3987 0.47 -1.4 4,745,412 + Psyr_3987 0.47 +0.7 4,745,412 + Psyr_3987 0.47 +0.4 4,745,412 + Psyr_3987 0.47 -1.3 4,745,412 + Psyr_3987 0.47 -1.4 4,745,412 + Psyr_3987 0.47 +0.1 4,745,412 + Psyr_3987 0.47 +0.7 4,745,412 + Psyr_3987 0.47 +0.9 4,745,413 - Psyr_3987 0.47 -0.0 4,745,413 - Psyr_3987 0.47 +0.3 4,745,413 - Psyr_3987 0.47 +0.5 4,745,413 - Psyr_3987 0.47 -0.1 4,745,413 - Psyr_3987 0.47 -1.1 4,745,413 - Psyr_3987 0.47 +0.9 4,745,413 - Psyr_3987 0.47 +0.6 4,745,413 - Psyr_3987 0.47 +0.4 4,745,543 + Psyr_3987 0.59 +0.2 4,745,543 + Psyr_3987 0.59 -0.4 4,745,609 - Psyr_3987 0.64 +1.1 4,745,661 + Psyr_3987 0.69 +1.0 4,745,661 + Psyr_3987 0.69 +3.3 4,745,671 + Psyr_3987 0.70 +0.9 4,745,701 + Psyr_3987 0.72 +1.0 4,745,826 + Psyr_3987 0.83 +1.4 4,745,826 + Psyr_3987 0.83 +0.4 4,745,826 + Psyr_3987 0.83 -0.7 4,745,826 + Psyr_3987 0.83 +0.2 4,745,827 - Psyr_3987 0.83 -0.6 4,745,827 - Psyr_3987 0.83 -0.4 4,745,827 - Psyr_3987 0.83 -0.8
Or see this region's nucleotide sequence