Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3831 and Psyr_3832 are separated by 173 nucleotides Psyr_3832 and Psyr_3833 overlap by 11 nucleotides Psyr_3833 and Psyr_3834 are separated by 317 nucleotides
Psyr_3831: Psyr_3831 - ATP-dependent helicase HrpA, at 4,564,908 to 4,568,819
_3831
Psyr_3832: Psyr_3832 - Prevent-host-death protein, at 4,568,993 to 4,569,238
_3832
Psyr_3833: Psyr_3833 - Plasmid stabilization system, at 4,569,228 to 4,569,518
_3833
Psyr_3834: Psyr_3834 - AMP-dependent synthetase and ligase, at 4,569,836 to 4,571,527
_3834
Position (kb) 4569
4570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4568.263 kb on + strand, within Psyr_3831 at 4568.453 kb on + strand at 4568.618 kb on - strand at 4568.908 kb on + strand at 4568.909 kb on - strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.236 kb on + strand at 4569.236 kb on + strand at 4569.237 kb on - strand at 4569.237 kb on - strand at 4569.237 kb on - strand at 4569.378 kb on + strand, within Psyr_3833 at 4569.378 kb on + strand, within Psyr_3833 at 4569.418 kb on - strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.482 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.487 kb on - strand, within Psyr_3833 at 4569.538 kb on - strand at 4569.538 kb on - strand at 4569.538 kb on - strand at 4569.648 kb on - strand at 4569.744 kb on + strand at 4569.745 kb on - strand at 4569.745 kb on - strand at 4569.778 kb on + strand at 4569.778 kb on + strand at 4569.781 kb on - strand at 4569.781 kb on - strand at 4569.782 kb on + strand at 4569.783 kb on - strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4570.106 kb on + strand, within Psyr_3834 at 4570.106 kb on + strand, within Psyr_3834 at 4570.156 kb on + strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.186 kb on - strand, within Psyr_3834 at 4570.186 kb on - strand, within Psyr_3834 at 4570.407 kb on + strand, within Psyr_3834 at 4570.407 kb on + strand, within Psyr_3834 at 4570.407 kb on + strand, within Psyr_3834 at 4570.408 kb on - strand, within Psyr_3834 at 4570.408 kb on - strand, within Psyr_3834 at 4570.456 kb on - strand, within Psyr_3834 at 4570.456 kb on - strand, within Psyr_3834
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 4,568,263 + Psyr_3831 0.86 +0.3 4,568,453 + -0.1 4,568,618 - -0.4 4,568,908 + -1.8 4,568,909 - -0.8 4,569,223 + -1.1 4,569,223 + -1.8 4,569,223 + +0.8 4,569,223 + -0.2 4,569,223 + -0.4 4,569,223 + +0.3 4,569,224 - -0.8 4,569,224 - -0.2 4,569,225 + -0.3 4,569,225 + +1.4 4,569,225 + -1.3 4,569,225 + +2.4 4,569,225 + -1.5 4,569,225 + +1.2 4,569,225 + -0.2 4,569,225 + +0.6 4,569,225 + -0.1 4,569,225 + +0.1 4,569,225 + -1.5 4,569,225 + -1.8 4,569,225 + +0.5 4,569,225 + -0.2 4,569,225 + -0.3 4,569,225 + +0.9 4,569,225 + +0.3 4,569,225 + +0.2 4,569,225 + +0.8 4,569,225 + -1.0 4,569,225 + -1.4 4,569,225 + +0.7 4,569,225 + +0.2 4,569,225 + -0.2 4,569,225 + +0.5 4,569,225 + +0.2 4,569,225 + +1.3 4,569,225 + -1.8 4,569,225 + -0.3 4,569,225 + -0.1 4,569,225 + +0.4 4,569,225 + +2.0 4,569,225 + +1.1 4,569,225 + +0.8 4,569,225 + +1.3 4,569,226 - -0.1 4,569,226 - +1.8 4,569,226 - +0.4 4,569,226 - -0.5 4,569,226 - +0.1 4,569,226 - +0.4 4,569,226 - -0.9 4,569,226 - +0.7 4,569,226 - -1.6 4,569,226 - +1.0 4,569,226 - +0.5 4,569,226 - +0.6 4,569,226 - -0.6 4,569,226 - -0.1 4,569,226 - -0.4 4,569,226 - +0.0 4,569,226 - -1.2 4,569,226 - +0.8 4,569,226 - +1.3 4,569,226 - +0.6 4,569,226 - -0.1 4,569,226 - -1.3 4,569,226 - +0.6 4,569,226 - +0.2 4,569,226 - -0.7 4,569,226 - +0.5 4,569,226 - -1.8 4,569,226 - +0.3 4,569,226 - -0.4 4,569,226 - -2.0 4,569,226 - +0.1 4,569,226 - -0.9 4,569,226 - +0.7 4,569,226 - +0.4 4,569,226 - -1.2 4,569,236 + -0.2 4,569,236 + -1.0 4,569,237 - -0.8 4,569,237 - +1.5 4,569,237 - +0.6 4,569,378 + Psyr_3833 0.52 +0.1 4,569,378 + Psyr_3833 0.52 +2.7 4,569,418 - Psyr_3833 0.65 +0.7 4,569,434 + Psyr_3833 0.71 +0.9 4,569,434 + Psyr_3833 0.71 +2.2 4,569,434 + Psyr_3833 0.71 +0.4 4,569,434 + Psyr_3833 0.71 -0.4 4,569,435 - Psyr_3833 0.71 +0.2 4,569,435 - Psyr_3833 0.71 -1.4 4,569,435 - Psyr_3833 0.71 -1.3 4,569,482 + Psyr_3833 0.87 +3.1 4,569,486 + Psyr_3833 0.89 +0.3 4,569,486 + Psyr_3833 0.89 +0.2 4,569,486 + Psyr_3833 0.89 +0.0 4,569,487 - Psyr_3833 0.89 +0.8 4,569,538 - -0.1 4,569,538 - +0.5 4,569,538 - -1.0 4,569,648 - -0.3 4,569,744 + +1.4 4,569,745 - +1.4 4,569,745 - -0.4 4,569,778 + +1.0 4,569,778 + -1.4 4,569,781 - +0.1 4,569,781 - -0.4 4,569,782 + -0.5 4,569,783 - -0.2 4,569,837 + +0.8 4,569,837 + -0.3 4,569,837 + -3.2 4,569,837 + +1.9 4,569,837 + -1.7 4,569,837 + +0.5 4,569,837 + +0.1 4,569,838 - -0.2 4,569,838 - +0.2 4,569,838 - -0.6 4,569,838 - -0.4 4,570,106 + Psyr_3834 0.16 +1.8 4,570,106 + Psyr_3834 0.16 -0.6 4,570,156 + Psyr_3834 0.19 -0.8 4,570,157 - Psyr_3834 0.19 +2.0 4,570,157 - Psyr_3834 0.19 +0.4 4,570,157 - Psyr_3834 0.19 +0.4 4,570,186 - Psyr_3834 0.21 -0.2 4,570,186 - Psyr_3834 0.21 -0.6 4,570,407 + Psyr_3834 0.34 +0.6 4,570,407 + Psyr_3834 0.34 +0.4 4,570,407 + Psyr_3834 0.34 +0.1 4,570,408 - Psyr_3834 0.34 +0.2 4,570,408 - Psyr_3834 0.34 -1.1 4,570,456 - Psyr_3834 0.37 +0.5 4,570,456 - Psyr_3834 0.37 -1.5
Or see this region's nucleotide sequence