Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3785

Experiment: KB with Chloramphenicol 12.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3783 and Psyr_3784 are separated by 77 nucleotidesPsyr_3784 and Psyr_3785 are separated by 144 nucleotidesPsyr_3785 and Psyr_3786 are separated by 69 nucleotides Psyr_3783: Psyr_3783 - conserved hypothetical protein, at 4,500,190 to 4,500,570 _3783 Psyr_3784: Psyr_3784 - conserved hypothetical protein, at 4,500,648 to 4,501,049 _3784 Psyr_3785: Psyr_3785 - DSBA oxidoreductase, at 4,501,194 to 4,501,826 _3785 Psyr_3786: Psyr_3786 - RNA binding S1, at 4,501,896 to 4,502,732 _3786 Position (kb) 4501 4502Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4500.336 kb on - strand, within Psyr_3783at 4500.343 kb on + strand, within Psyr_3783at 4500.344 kb on - strand, within Psyr_3783at 4500.344 kb on - strand, within Psyr_3783at 4500.413 kb on + strand, within Psyr_3783at 4500.414 kb on - strand, within Psyr_3783at 4500.569 kb on - strandat 4500.778 kb on + strand, within Psyr_3784at 4500.778 kb on + strand, within Psyr_3784at 4500.778 kb on + strand, within Psyr_3784at 4500.778 kb on + strand, within Psyr_3784at 4500.778 kb on + strand, within Psyr_3784at 4500.778 kb on + strand, within Psyr_3784at 4500.887 kb on - strand, within Psyr_3784at 4500.887 kb on - strand, within Psyr_3784at 4500.918 kb on + strand, within Psyr_3784at 4500.919 kb on - strand, within Psyr_3784at 4500.958 kb on + strand, within Psyr_3784at 4500.958 kb on + strand, within Psyr_3784at 4501.027 kb on + strandat 4501.027 kb on + strandat 4501.028 kb on - strandat 4501.039 kb on - strandat 4501.097 kb on + strandat 4501.098 kb on - strandat 4501.098 kb on - strandat 4501.098 kb on - strandat 4501.113 kb on + strandat 4501.144 kb on + strandat 4501.145 kb on - strandat 4501.145 kb on - strandat 4501.145 kb on - strandat 4501.219 kb on + strandat 4501.219 kb on + strandat 4501.219 kb on + strandat 4501.219 kb on + strandat 4501.219 kb on + strandat 4501.219 kb on + strandat 4501.220 kb on - strandat 4501.220 kb on - strandat 4501.220 kb on - strandat 4501.220 kb on - strandat 4501.220 kb on - strandat 4501.220 kb on - strandat 4501.220 kb on - strandat 4501.236 kb on + strandat 4501.236 kb on + strandat 4501.237 kb on - strandat 4501.237 kb on - strandat 4501.254 kb on + strandat 4501.293 kb on + strand, within Psyr_3785at 4501.293 kb on + strand, within Psyr_3785at 4501.294 kb on - strand, within Psyr_3785at 4501.294 kb on - strand, within Psyr_3785at 4501.374 kb on + strand, within Psyr_3785at 4501.374 kb on + strand, within Psyr_3785at 4501.403 kb on - strand, within Psyr_3785at 4501.562 kb on + strand, within Psyr_3785at 4501.563 kb on - strand, within Psyr_3785at 4501.802 kb on - strandat 4501.945 kb on + strandat 4501.945 kb on + strandat 4501.945 kb on + strandat 4501.945 kb on + strandat 4501.946 kb on - strandat 4501.946 kb on - strandat 4501.946 kb on - strandat 4501.946 kb on - strandat 4502.155 kb on + strand, within Psyr_3786at 4502.155 kb on + strand, within Psyr_3786at 4502.156 kb on - strand, within Psyr_3786at 4502.156 kb on - strand, within Psyr_3786at 4502.156 kb on - strand, within Psyr_3786at 4502.299 kb on + strand, within Psyr_3786at 4502.299 kb on + strand, within Psyr_3786at 4502.300 kb on - strand, within Psyr_3786at 4502.300 kb on - strand, within Psyr_3786at 4502.300 kb on - strand, within Psyr_3786at 4502.300 kb on - strand, within Psyr_3786at 4502.300 kb on - strand, within Psyr_3786at 4502.300 kb on - strand, within Psyr_3786at 4502.375 kb on - strand, within Psyr_3786at 4502.392 kb on + strand, within Psyr_3786at 4502.392 kb on + strand, within Psyr_3786at 4502.428 kb on + strand, within Psyr_3786at 4502.469 kb on + strand, within Psyr_3786at 4502.469 kb on + strand, within Psyr_3786at 4502.469 kb on + strand, within Psyr_3786at 4502.470 kb on - strand, within Psyr_3786at 4502.470 kb on - strand, within Psyr_3786at 4502.470 kb on - strand, within Psyr_3786at 4502.470 kb on - strand, within Psyr_3786at 4502.572 kb on + strand, within Psyr_3786at 4502.572 kb on + strand, within Psyr_3786at 4502.572 kb on + strand, within Psyr_3786at 4502.572 kb on + strand, within Psyr_3786at 4502.573 kb on - strand, within Psyr_3786at 4502.573 kb on - strand, within Psyr_3786at 4502.626 kb on + strand, within Psyr_3786at 4502.627 kb on - strand, within Psyr_3786at 4502.671 kb on + strandat 4502.671 kb on + strandat 4502.714 kb on - strandat 4502.714 kb on - strandat 4502.714 kb on - strandat 4502.749 kb on + strandat 4502.749 kb on + strandat 4502.766 kb on - strandat 4502.813 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml
remove
4,500,336 - Psyr_3783 0.38 +1.4
4,500,343 + Psyr_3783 0.40 -0.6
4,500,344 - Psyr_3783 0.40 -0.5
4,500,344 - Psyr_3783 0.40 -1.0
4,500,413 + Psyr_3783 0.59 +0.8
4,500,414 - Psyr_3783 0.59 -0.8
4,500,569 - +0.8
4,500,778 + Psyr_3784 0.32 -0.7
4,500,778 + Psyr_3784 0.32 +2.0
4,500,778 + Psyr_3784 0.32 +0.3
4,500,778 + Psyr_3784 0.32 -1.1
4,500,778 + Psyr_3784 0.32 -0.9
4,500,778 + Psyr_3784 0.32 -0.2
4,500,887 - Psyr_3784 0.59 -0.7
4,500,887 - Psyr_3784 0.59 -0.6
4,500,918 + Psyr_3784 0.67 -0.4
4,500,919 - Psyr_3784 0.67 -1.1
4,500,958 + Psyr_3784 0.77 +0.3
4,500,958 + Psyr_3784 0.77 -0.3
4,501,027 + +0.2
4,501,027 + -0.0
4,501,028 - +0.3
4,501,039 - +0.5
4,501,097 + -1.2
4,501,098 - +0.4
4,501,098 - -0.5
4,501,098 - -1.2
4,501,113 + -0.2
4,501,144 + +0.8
4,501,145 - +0.8
4,501,145 - -1.3
4,501,145 - +0.0
4,501,219 + +3.8
4,501,219 + -0.9
4,501,219 + +1.2
4,501,219 + -0.1
4,501,219 + -0.3
4,501,219 + +1.0
4,501,220 - -0.6
4,501,220 - -1.9
4,501,220 - -1.2
4,501,220 - +0.2
4,501,220 - -0.2
4,501,220 - -0.3
4,501,220 - -1.3
4,501,236 + -0.7
4,501,236 + +0.0
4,501,237 - -1.5
4,501,237 - -0.2
4,501,254 + -1.2
4,501,293 + Psyr_3785 0.16 -0.4
4,501,293 + Psyr_3785 0.16 -0.8
4,501,294 - Psyr_3785 0.16 +0.1
4,501,294 - Psyr_3785 0.16 -0.5
4,501,374 + Psyr_3785 0.28 -0.8
4,501,374 + Psyr_3785 0.28 -1.5
4,501,403 - Psyr_3785 0.33 +0.0
4,501,562 + Psyr_3785 0.58 -0.5
4,501,563 - Psyr_3785 0.58 -0.2
4,501,802 - -2.4
4,501,945 + +1.4
4,501,945 + -0.1
4,501,945 + +1.1
4,501,945 + -1.5
4,501,946 - -0.4
4,501,946 - +0.5
4,501,946 - -0.8
4,501,946 - -1.5
4,502,155 + Psyr_3786 0.31 +0.8
4,502,155 + Psyr_3786 0.31 -0.4
4,502,156 - Psyr_3786 0.31 -1.4
4,502,156 - Psyr_3786 0.31 -0.3
4,502,156 - Psyr_3786 0.31 +1.9
4,502,299 + Psyr_3786 0.48 -0.2
4,502,299 + Psyr_3786 0.48 +0.8
4,502,300 - Psyr_3786 0.48 -1.3
4,502,300 - Psyr_3786 0.48 -0.4
4,502,300 - Psyr_3786 0.48 -0.3
4,502,300 - Psyr_3786 0.48 +0.2
4,502,300 - Psyr_3786 0.48 +0.8
4,502,300 - Psyr_3786 0.48 -0.3
4,502,375 - Psyr_3786 0.57 -0.2
4,502,392 + Psyr_3786 0.59 -1.4
4,502,392 + Psyr_3786 0.59 +0.8
4,502,428 + Psyr_3786 0.64 -1.8
4,502,469 + Psyr_3786 0.68 +0.0
4,502,469 + Psyr_3786 0.68 -1.8
4,502,469 + Psyr_3786 0.68 -0.5
4,502,470 - Psyr_3786 0.69 +0.1
4,502,470 - Psyr_3786 0.69 +1.4
4,502,470 - Psyr_3786 0.69 +0.2
4,502,470 - Psyr_3786 0.69 +0.3
4,502,572 + Psyr_3786 0.81 +0.0
4,502,572 + Psyr_3786 0.81 +0.4
4,502,572 + Psyr_3786 0.81 +0.5
4,502,572 + Psyr_3786 0.81 -1.7
4,502,573 - Psyr_3786 0.81 -0.1
4,502,573 - Psyr_3786 0.81 -0.7
4,502,626 + Psyr_3786 0.87 -0.7
4,502,627 - Psyr_3786 0.87 -0.2
4,502,671 + -0.2
4,502,671 + +0.0
4,502,714 - -0.2
4,502,714 - +1.8
4,502,714 - -0.8
4,502,749 + -0.2
4,502,749 + +0.8
4,502,766 - +0.8
4,502,813 - -0.2

Or see this region's nucleotide sequence