Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3535 and Psyr_3536 overlap by 31 nucleotides Psyr_3536 and Psyr_3537 are separated by 217 nucleotides Psyr_3537 and Psyr_3538 are separated by 117 nucleotides Psyr_3538 and Psyr_3539 are separated by 255 nucleotides
Psyr_3535: Psyr_3535 - conserved hypothetical protein, at 4,213,798 to 4,214,592
_3535
Psyr_3536: Psyr_3536 - hypothetical protein, at 4,214,562 to 4,214,981
_3536
Psyr_3537: Psyr_3537 - hydrolase, at 4,215,199 to 4,216,062
_3537
Psyr_3538: Psyr_3538 - transcriptional regulator, TetR family, at 4,216,180 to 4,216,782
_3538
Psyr_3539: Psyr_3539 - Short-chain dehydrogenase/reductase SDR, at 4,217,038 to 4,217,826
_3539
Position (kb) 4215
4216
4217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4214.230 kb on + strand, within Psyr_3535 at 4214.230 kb on + strand, within Psyr_3535 at 4214.230 kb on + strand, within Psyr_3535 at 4214.231 kb on - strand, within Psyr_3535 at 4214.231 kb on - strand, within Psyr_3535 at 4214.231 kb on - strand, within Psyr_3535 at 4214.476 kb on + strand, within Psyr_3535 at 4214.477 kb on - strand, within Psyr_3535 at 4214.477 kb on - strand, within Psyr_3535 at 4214.525 kb on + strand at 4214.525 kb on + strand at 4214.525 kb on + strand at 4214.525 kb on + strand at 4214.563 kb on + strand at 4214.564 kb on - strand at 4214.574 kb on + strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.646 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.675 kb on - strand, within Psyr_3536 at 4214.710 kb on - strand, within Psyr_3536 at 4214.755 kb on + strand, within Psyr_3536 at 4214.756 kb on - strand, within Psyr_3536 at 4214.756 kb on - strand, within Psyr_3536 at 4214.756 kb on - strand, within Psyr_3536 at 4214.834 kb on + strand, within Psyr_3536 at 4214.835 kb on - strand, within Psyr_3536 at 4214.871 kb on + strand, within Psyr_3536 at 4214.872 kb on - strand, within Psyr_3536 at 4214.872 kb on - strand, within Psyr_3536 at 4214.972 kb on + strand at 4215.126 kb on + strand at 4215.127 kb on - strand at 4215.127 kb on - strand at 4215.149 kb on + strand at 4215.159 kb on - strand at 4215.239 kb on - strand at 4215.285 kb on + strand at 4215.311 kb on - strand, within Psyr_3537 at 4215.417 kb on - strand, within Psyr_3537 at 4215.472 kb on + strand, within Psyr_3537 at 4215.472 kb on + strand, within Psyr_3537 at 4215.472 kb on + strand, within Psyr_3537 at 4215.473 kb on - strand, within Psyr_3537 at 4215.511 kb on + strand, within Psyr_3537 at 4215.511 kb on + strand, within Psyr_3537 at 4215.511 kb on + strand, within Psyr_3537 at 4215.511 kb on + strand, within Psyr_3537 at 4215.511 kb on + strand, within Psyr_3537 at 4215.512 kb on - strand, within Psyr_3537 at 4215.522 kb on + strand, within Psyr_3537 at 4215.523 kb on - strand, within Psyr_3537 at 4215.523 kb on - strand, within Psyr_3537 at 4215.523 kb on - strand, within Psyr_3537 at 4215.523 kb on - strand, within Psyr_3537 at 4215.681 kb on + strand, within Psyr_3537 at 4215.681 kb on + strand, within Psyr_3537 at 4215.681 kb on + strand, within Psyr_3537 at 4215.681 kb on + strand, within Psyr_3537 at 4215.682 kb on - strand, within Psyr_3537 at 4215.682 kb on - strand, within Psyr_3537 at 4215.682 kb on - strand, within Psyr_3537 at 4215.682 kb on - strand, within Psyr_3537 at 4215.788 kb on + strand, within Psyr_3537 at 4215.818 kb on + strand, within Psyr_3537 at 4215.818 kb on + strand, within Psyr_3537 at 4215.818 kb on + strand, within Psyr_3537 at 4215.818 kb on + strand, within Psyr_3537 at 4215.819 kb on - strand, within Psyr_3537 at 4215.819 kb on - strand, within Psyr_3537 at 4215.819 kb on - strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.848 kb on + strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.849 kb on - strand, within Psyr_3537 at 4215.971 kb on + strand, within Psyr_3537 at 4216.034 kb on - strand at 4216.100 kb on + strand at 4216.150 kb on + strand at 4216.150 kb on + strand at 4216.151 kb on - strand at 4216.167 kb on + strand at 4216.167 kb on + strand at 4216.177 kb on + strand at 4216.177 kb on + strand at 4216.177 kb on + strand at 4216.177 kb on + strand at 4216.177 kb on + strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.207 kb on + strand at 4216.207 kb on + strand at 4216.207 kb on + strand at 4216.208 kb on - strand at 4216.387 kb on + strand, within Psyr_3538 at 4216.388 kb on - strand, within Psyr_3538 at 4216.388 kb on - strand, within Psyr_3538 at 4216.462 kb on + strand, within Psyr_3538 at 4216.462 kb on + strand, within Psyr_3538 at 4216.463 kb on - strand, within Psyr_3538 at 4216.463 kb on - strand, within Psyr_3538 at 4216.463 kb on - strand, within Psyr_3538 at 4216.466 kb on + strand, within Psyr_3538 at 4216.466 kb on + strand, within Psyr_3538 at 4216.466 kb on + strand, within Psyr_3538 at 4216.466 kb on + strand, within Psyr_3538 at 4216.467 kb on - strand, within Psyr_3538 at 4216.467 kb on - strand, within Psyr_3538 at 4216.467 kb on - strand, within Psyr_3538 at 4216.467 kb on - strand, within Psyr_3538 at 4216.467 kb on - strand, within Psyr_3538 at 4216.520 kb on + strand, within Psyr_3538 at 4216.520 kb on + strand, within Psyr_3538 at 4216.521 kb on - strand, within Psyr_3538 at 4216.545 kb on + strand, within Psyr_3538 at 4216.545 kb on + strand, within Psyr_3538 at 4216.545 kb on + strand, within Psyr_3538 at 4216.546 kb on - strand, within Psyr_3538 at 4216.546 kb on - strand, within Psyr_3538 at 4216.560 kb on + strand, within Psyr_3538 at 4216.561 kb on - strand, within Psyr_3538 at 4216.561 kb on - strand, within Psyr_3538 at 4216.610 kb on - strand, within Psyr_3538 at 4216.691 kb on + strand, within Psyr_3538 at 4216.792 kb on + strand at 4217.022 kb on + strand at 4217.023 kb on - strand at 4217.023 kb on - strand at 4217.028 kb on + strand at 4217.028 kb on + strand at 4217.028 kb on + strand at 4217.028 kb on + strand at 4217.028 kb on + strand at 4217.028 kb on + strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 4,214,230 + Psyr_3535 0.54 -0.6 4,214,230 + Psyr_3535 0.54 +1.5 4,214,230 + Psyr_3535 0.54 -0.2 4,214,231 - Psyr_3535 0.54 -0.0 4,214,231 - Psyr_3535 0.54 +0.2 4,214,231 - Psyr_3535 0.54 +0.1 4,214,476 + Psyr_3535 0.85 -0.1 4,214,477 - Psyr_3535 0.85 -0.7 4,214,477 - Psyr_3535 0.85 +0.2 4,214,525 + -2.5 4,214,525 + +0.9 4,214,525 + -3.3 4,214,525 + +2.6 4,214,563 + +0.3 4,214,564 - -0.5 4,214,574 + +0.5 4,214,575 - -0.4 4,214,575 - -0.6 4,214,575 - +0.3 4,214,575 - -0.4 4,214,575 - -1.1 4,214,646 + Psyr_3536 0.20 +0.8 4,214,674 + Psyr_3536 0.27 -1.1 4,214,674 + Psyr_3536 0.27 -0.2 4,214,674 + Psyr_3536 0.27 -0.5 4,214,674 + Psyr_3536 0.27 -1.0 4,214,675 - Psyr_3536 0.27 -1.2 4,214,710 - Psyr_3536 0.35 -1.0 4,214,755 + Psyr_3536 0.46 -0.2 4,214,756 - Psyr_3536 0.46 +0.8 4,214,756 - Psyr_3536 0.46 +0.8 4,214,756 - Psyr_3536 0.46 -1.5 4,214,834 + Psyr_3536 0.65 +0.4 4,214,835 - Psyr_3536 0.65 -0.4 4,214,871 + Psyr_3536 0.74 -0.1 4,214,872 - Psyr_3536 0.74 +0.3 4,214,872 - Psyr_3536 0.74 +0.5 4,214,972 + -0.1 4,215,126 + +0.3 4,215,127 - -0.7 4,215,127 - +0.2 4,215,149 + -0.2 4,215,159 - +0.6 4,215,239 - -1.1 4,215,285 + +0.2 4,215,311 - Psyr_3537 0.13 +0.6 4,215,417 - Psyr_3537 0.25 +0.2 4,215,472 + Psyr_3537 0.32 +0.6 4,215,472 + Psyr_3537 0.32 -0.1 4,215,472 + Psyr_3537 0.32 +0.4 4,215,473 - Psyr_3537 0.32 -0.5 4,215,511 + Psyr_3537 0.36 -1.2 4,215,511 + Psyr_3537 0.36 -0.4 4,215,511 + Psyr_3537 0.36 +1.2 4,215,511 + Psyr_3537 0.36 +0.3 4,215,511 + Psyr_3537 0.36 -0.6 4,215,512 - Psyr_3537 0.36 -2.8 4,215,522 + Psyr_3537 0.37 +2.4 4,215,523 - Psyr_3537 0.38 -0.9 4,215,523 - Psyr_3537 0.38 -2.0 4,215,523 - Psyr_3537 0.38 -0.2 4,215,523 - Psyr_3537 0.38 -0.8 4,215,681 + Psyr_3537 0.56 -0.8 4,215,681 + Psyr_3537 0.56 -0.2 4,215,681 + Psyr_3537 0.56 -1.8 4,215,681 + Psyr_3537 0.56 +3.1 4,215,682 - Psyr_3537 0.56 -0.4 4,215,682 - Psyr_3537 0.56 -0.0 4,215,682 - Psyr_3537 0.56 +2.5 4,215,682 - Psyr_3537 0.56 -0.1 4,215,788 + Psyr_3537 0.68 +0.8 4,215,818 + Psyr_3537 0.72 -0.6 4,215,818 + Psyr_3537 0.72 -1.9 4,215,818 + Psyr_3537 0.72 -0.8 4,215,818 + Psyr_3537 0.72 +0.8 4,215,819 - Psyr_3537 0.72 +0.2 4,215,819 - Psyr_3537 0.72 +0.3 4,215,819 - Psyr_3537 0.72 +1.3 4,215,848 + Psyr_3537 0.75 +0.8 4,215,848 + Psyr_3537 0.75 -0.2 4,215,848 + Psyr_3537 0.75 +1.1 4,215,848 + Psyr_3537 0.75 -0.4 4,215,848 + Psyr_3537 0.75 -1.2 4,215,848 + Psyr_3537 0.75 -0.5 4,215,848 + Psyr_3537 0.75 -1.7 4,215,848 + Psyr_3537 0.75 +0.2 4,215,848 + Psyr_3537 0.75 -0.2 4,215,848 + Psyr_3537 0.75 +1.3 4,215,848 + Psyr_3537 0.75 -2.2 4,215,848 + Psyr_3537 0.75 -1.5 4,215,848 + Psyr_3537 0.75 -0.4 4,215,848 + Psyr_3537 0.75 -0.4 4,215,848 + Psyr_3537 0.75 +0.6 4,215,848 + Psyr_3537 0.75 -0.4 4,215,849 - Psyr_3537 0.75 -0.8 4,215,849 - Psyr_3537 0.75 +1.0 4,215,849 - Psyr_3537 0.75 +0.7 4,215,849 - Psyr_3537 0.75 -1.2 4,215,849 - Psyr_3537 0.75 -0.4 4,215,849 - Psyr_3537 0.75 +1.0 4,215,849 - Psyr_3537 0.75 -0.5 4,215,849 - Psyr_3537 0.75 -0.4 4,215,849 - Psyr_3537 0.75 +1.4 4,215,849 - Psyr_3537 0.75 +0.4 4,215,849 - Psyr_3537 0.75 -1.0 4,215,849 - Psyr_3537 0.75 -1.0 4,215,971 + Psyr_3537 0.89 -1.0 4,216,034 - -0.5 4,216,100 + +0.8 4,216,150 + +2.8 4,216,150 + +0.5 4,216,151 - +1.0 4,216,167 + -2.3 4,216,167 + -1.2 4,216,177 + +2.4 4,216,177 + +0.9 4,216,177 + +0.4 4,216,177 + -1.2 4,216,177 + +0.8 4,216,178 - -0.4 4,216,178 - -0.3 4,216,178 - -0.2 4,216,178 - +0.2 4,216,178 - +0.2 4,216,178 - -0.3 4,216,178 - +0.4 4,216,178 - +1.3 4,216,178 - -0.0 4,216,178 - -1.2 4,216,178 - -0.8 4,216,178 - +0.4 4,216,207 + -0.6 4,216,207 + -0.0 4,216,207 + -0.2 4,216,208 - -0.4 4,216,387 + Psyr_3538 0.34 -1.9 4,216,388 - Psyr_3538 0.34 -0.1 4,216,388 - Psyr_3538 0.34 +1.1 4,216,462 + Psyr_3538 0.47 -0.7 4,216,462 + Psyr_3538 0.47 -0.2 4,216,463 - Psyr_3538 0.47 +0.1 4,216,463 - Psyr_3538 0.47 +1.3 4,216,463 - Psyr_3538 0.47 -1.0 4,216,466 + Psyr_3538 0.47 -0.1 4,216,466 + Psyr_3538 0.47 -0.8 4,216,466 + Psyr_3538 0.47 +0.2 4,216,466 + Psyr_3538 0.47 +0.5 4,216,467 - Psyr_3538 0.48 -0.4 4,216,467 - Psyr_3538 0.48 +0.8 4,216,467 - Psyr_3538 0.48 -0.0 4,216,467 - Psyr_3538 0.48 +0.8 4,216,467 - Psyr_3538 0.48 +0.5 4,216,520 + Psyr_3538 0.56 -1.7 4,216,520 + Psyr_3538 0.56 +0.8 4,216,521 - Psyr_3538 0.57 -0.5 4,216,545 + Psyr_3538 0.61 +0.6 4,216,545 + Psyr_3538 0.61 +1.4 4,216,545 + Psyr_3538 0.61 +1.4 4,216,546 - Psyr_3538 0.61 -0.8 4,216,546 - Psyr_3538 0.61 +0.3 4,216,560 + Psyr_3538 0.63 +0.2 4,216,561 - Psyr_3538 0.63 +0.1 4,216,561 - Psyr_3538 0.63 +0.4 4,216,610 - Psyr_3538 0.71 -0.7 4,216,691 + Psyr_3538 0.85 -0.1 4,216,792 + -0.2 4,217,022 + -0.1 4,217,023 - -0.8 4,217,023 - -0.8 4,217,028 + -0.3 4,217,028 + -1.3 4,217,028 + +0.3 4,217,028 + +0.5 4,217,028 + -0.4 4,217,028 + +0.9 4,217,029 - +0.6 4,217,029 - +0.1 4,217,029 - +1.8 4,217,029 - +0.5 4,217,029 - +0.8 4,217,029 - -0.5 4,217,029 - -0.4
Or see this region's nucleotide sequence