Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3516 and Psyr_3517 are separated by 0 nucleotides Psyr_3517 and Psyr_3518 are separated by 151 nucleotides Psyr_3518 and Psyr_3519 are separated by 8 nucleotides Psyr_3519 and Psyr_3520 are separated by 60 nucleotides
Psyr_3516: Psyr_3516 - Protein of unknown function DUF1338, at 4,192,314 to 4,193,705
_3516
Psyr_3517: Psyr_3517 - hypothetical protein, at 4,193,706 to 4,193,972
_3517
Psyr_3518: Psyr_3518 - hypothetical protein, at 4,194,124 to 4,194,519
_3518
Psyr_3519: Psyr_3519 - hypothetical protein, at 4,194,528 to 4,195,148
_3519
Psyr_3520: Psyr_3520 - membrane protein, putative, at 4,195,209 to 4,196,537
_3520
Position (kb) 4194
4195
4196 Strain fitness (log2 ratio) -2
-1
0
1 at 4193.634 kb on + strand at 4193.634 kb on + strand at 4193.703 kb on + strand at 4193.703 kb on + strand at 4193.704 kb on - strand at 4193.704 kb on - strand at 4193.704 kb on - strand at 4193.704 kb on - strand at 4193.704 kb on - strand at 4193.707 kb on + strand at 4193.707 kb on + strand at 4193.815 kb on - strand, within Psyr_3517 at 4194.235 kb on - strand, within Psyr_3518 at 4194.235 kb on - strand, within Psyr_3518 at 4194.360 kb on + strand, within Psyr_3518 at 4194.361 kb on - strand, within Psyr_3518 at 4194.361 kb on - strand, within Psyr_3518 at 4194.361 kb on - strand, within Psyr_3518 at 4194.363 kb on - strand, within Psyr_3518 at 4194.421 kb on - strand, within Psyr_3518 at 4194.421 kb on - strand, within Psyr_3518 at 4194.639 kb on - strand, within Psyr_3519 at 4194.639 kb on - strand, within Psyr_3519 at 4194.639 kb on - strand, within Psyr_3519 at 4194.639 kb on - strand, within Psyr_3519 at 4194.639 kb on - strand at 4194.639 kb on - strand, within Psyr_3519 at 4194.639 kb on - strand, within Psyr_3519 at 4194.639 kb on - strand, within Psyr_3519 at 4194.639 kb on - strand, within Psyr_3519 at 4194.842 kb on + strand, within Psyr_3519 at 4194.901 kb on + strand, within Psyr_3519 at 4194.944 kb on + strand, within Psyr_3519 at 4194.945 kb on - strand, within Psyr_3519 at 4195.068 kb on - strand, within Psyr_3519 at 4195.168 kb on + strand at 4195.168 kb on + strand at 4195.168 kb on + strand at 4195.168 kb on + strand at 4195.272 kb on + strand at 4195.272 kb on + strand at 4195.272 kb on + strand at 4195.273 kb on - strand at 4195.273 kb on - strand at 4195.273 kb on - strand at 4195.273 kb on - strand at 4195.273 kb on - strand at 4195.273 kb on - strand at 4195.273 kb on - strand at 4195.699 kb on - strand, within Psyr_3520 at 4195.740 kb on + strand, within Psyr_3520 at 4195.971 kb on + strand, within Psyr_3520 at 4195.971 kb on + strand, within Psyr_3520 at 4195.971 kb on + strand, within Psyr_3520 at 4195.971 kb on + strand, within Psyr_3520 at 4195.971 kb on + strand, within Psyr_3520 at 4195.972 kb on - strand, within Psyr_3520
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 4,193,634 + +0.1 4,193,634 + +0.2 4,193,703 + -0.2 4,193,703 + -0.7 4,193,704 - -0.9 4,193,704 - +0.8 4,193,704 - -0.7 4,193,704 - -1.2 4,193,704 - -0.0 4,193,707 + +0.3 4,193,707 + +0.0 4,193,815 - Psyr_3517 0.41 -0.1 4,194,235 - Psyr_3518 0.28 -0.7 4,194,235 - Psyr_3518 0.28 -0.2 4,194,360 + Psyr_3518 0.60 -0.4 4,194,361 - Psyr_3518 0.60 -0.2 4,194,361 - Psyr_3518 0.60 +1.4 4,194,361 - Psyr_3518 0.60 +0.4 4,194,363 - Psyr_3518 0.60 -0.8 4,194,421 - Psyr_3518 0.75 +0.5 4,194,421 - Psyr_3518 0.75 +0.5 4,194,639 - Psyr_3519 0.18 -0.8 4,194,639 - Psyr_3519 0.18 -0.8 4,194,639 - Psyr_3519 0.18 -0.4 4,194,639 - Psyr_3519 0.18 -2.1 4,194,639 - +0.8 4,194,639 - Psyr_3519 0.18 +0.1 4,194,639 - Psyr_3519 0.18 -0.8 4,194,639 - Psyr_3519 0.18 -0.2 4,194,639 - Psyr_3519 0.18 -0.5 4,194,842 + Psyr_3519 0.51 -0.8 4,194,901 + Psyr_3519 0.60 +0.4 4,194,944 + Psyr_3519 0.67 -1.0 4,194,945 - Psyr_3519 0.67 -0.5 4,195,068 - Psyr_3519 0.87 -0.6 4,195,168 + +0.5 4,195,168 + +0.1 4,195,168 + -0.4 4,195,168 + -0.0 4,195,272 + +0.1 4,195,272 + -1.6 4,195,272 + +0.9 4,195,273 - -0.8 4,195,273 - +0.6 4,195,273 - +0.2 4,195,273 - -0.1 4,195,273 - +1.1 4,195,273 - +0.2 4,195,273 - +0.2 4,195,699 - Psyr_3520 0.37 -0.4 4,195,740 + Psyr_3520 0.40 -0.2 4,195,971 + Psyr_3520 0.57 -1.7 4,195,971 + Psyr_3520 0.57 +1.6 4,195,971 + Psyr_3520 0.57 +0.5 4,195,971 + Psyr_3520 0.57 +0.3 4,195,971 + Psyr_3520 0.57 +0.7 4,195,972 - Psyr_3520 0.57 +0.5
Or see this region's nucleotide sequence