Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3349

Experiment: KB with Chloramphenicol 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3348 and Psyr_3349 are separated by 141 nucleotidesPsyr_3349 and Psyr_3350 are separated by 28 nucleotides Psyr_3348: Psyr_3348 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 4,003,979 to 4,005,607 _3348 Psyr_3349: Psyr_3349 - conserved hypothetical protein, at 4,005,749 to 4,006,177 _3349 Psyr_3350: Psyr_3350 - Allergen V5/Tpx-1 related protein, at 4,006,206 to 4,007,087 _3350 Position (kb) 4005 4006 4007Strain fitness (log2 ratio) -2 -1 0 1at 4004.917 kb on - strand, within Psyr_3348at 4005.063 kb on + strand, within Psyr_3348at 4005.063 kb on + strand, within Psyr_3348at 4005.064 kb on - strand, within Psyr_3348at 4005.064 kb on - strand, within Psyr_3348at 4005.064 kb on - strand, within Psyr_3348at 4005.064 kb on - strand, within Psyr_3348at 4005.064 kb on - strand, within Psyr_3348at 4005.064 kb on - strand, within Psyr_3348at 4005.064 kb on - strand, within Psyr_3348at 4005.097 kb on + strand, within Psyr_3348at 4005.097 kb on + strand, within Psyr_3348at 4005.606 kb on - strandat 4005.727 kb on - strandat 4005.727 kb on - strandat 4005.745 kb on - strandat 4005.917 kb on + strand, within Psyr_3349at 4005.917 kb on + strand, within Psyr_3349at 4005.917 kb on + strand, within Psyr_3349at 4005.917 kb on + strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.918 kb on - strand, within Psyr_3349at 4005.937 kb on + strand, within Psyr_3349at 4005.937 kb on + strand, within Psyr_3349at 4005.938 kb on - strand, within Psyr_3349at 4005.938 kb on - strand, within Psyr_3349at 4005.938 kb on - strand, within Psyr_3349at 4005.938 kb on - strand, within Psyr_3349at 4005.938 kb on - strand, within Psyr_3349at 4005.938 kb on - strand, within Psyr_3349at 4006.237 kb on + strandat 4006.405 kb on + strand, within Psyr_3350at 4007.038 kb on - strandat 4007.072 kb on - strandat 4007.072 kb on - strandat 4007.072 kb on - strandat 4007.116 kb on + strandat 4007.116 kb on + strandat 4007.117 kb on - strandat 4007.174 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml
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4,004,917 - Psyr_3348 0.58 -2.0
4,005,063 + Psyr_3348 0.67 -0.1
4,005,063 + Psyr_3348 0.67 +0.7
4,005,064 - Psyr_3348 0.67 +1.6
4,005,064 - Psyr_3348 0.67 -0.7
4,005,064 - Psyr_3348 0.67 +0.2
4,005,064 - Psyr_3348 0.67 -1.1
4,005,064 - Psyr_3348 0.67 +0.6
4,005,064 - Psyr_3348 0.67 -1.1
4,005,064 - Psyr_3348 0.67 -1.8
4,005,097 + Psyr_3348 0.69 +0.9
4,005,097 + Psyr_3348 0.69 -0.6
4,005,606 - -0.6
4,005,727 - +0.3
4,005,727 - +1.3
4,005,745 - -1.3
4,005,917 + Psyr_3349 0.39 +0.5
4,005,917 + Psyr_3349 0.39 -0.5
4,005,917 + Psyr_3349 0.39 -0.6
4,005,917 + Psyr_3349 0.39 -0.5
4,005,918 - Psyr_3349 0.39 -1.5
4,005,918 - Psyr_3349 0.39 -0.1
4,005,918 - Psyr_3349 0.39 +0.9
4,005,918 - Psyr_3349 0.39 -0.3
4,005,918 - Psyr_3349 0.39 -1.1
4,005,918 - Psyr_3349 0.39 -0.1
4,005,918 - Psyr_3349 0.39 +0.7
4,005,918 - Psyr_3349 0.39 -0.7
4,005,918 - Psyr_3349 0.39 +0.2
4,005,918 - Psyr_3349 0.39 -1.2
4,005,918 - Psyr_3349 0.39 -0.9
4,005,937 + Psyr_3349 0.44 -0.2
4,005,937 + Psyr_3349 0.44 -0.4
4,005,938 - Psyr_3349 0.44 -1.0
4,005,938 - Psyr_3349 0.44 -0.7
4,005,938 - Psyr_3349 0.44 -0.1
4,005,938 - Psyr_3349 0.44 -1.3
4,005,938 - Psyr_3349 0.44 -1.6
4,005,938 - Psyr_3349 0.44 -0.9
4,006,237 + -1.3
4,006,405 + Psyr_3350 0.23 +0.1
4,007,038 - -0.3
4,007,072 - +0.1
4,007,072 - +0.3
4,007,072 - +0.3
4,007,116 + -0.4
4,007,116 + +1.0
4,007,117 - +0.8
4,007,174 + +1.7

Or see this region's nucleotide sequence